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The map label for this gene is yabD [H]

Identifier: 32266821

GI number: 32266821

Start: 1281447

End: 1282244

Strand: Direct

Name: yabD [H]

Synonym: HH1322

Alternate gene names: 32266821

Gene position: 1281447-1282244 (Clockwise)

Preceding gene: 32266817

Following gene: 32266822

Centisome position: 71.23

GC content: 37.59

Gene sequence:

>798_bases
ATGAGTGCAAATTTTAGATATATGGTAGATACACATTGTCATTTGGATTCTCAAAGTTTTGAGAATGATTTAGAGCAAGT
AATTGCGCGTGCGTATGAGCAAAATGTCGCTAAAATCATTATTCCAGGTGCAGATATACGCACATTACCCCTTGCACAAA
ATATCGCTCATACTTATCCTAATGTATATTTTGCTGCAGGAGTGCATCCTAATGAGATTGTTGATTTTGATATAAAGGTG
CTTGAAGAGTATGCAAAAGATGAAAAGTGTATTGCTATTGGAGAGTGTGGGTTAGATTATTATCGTTTGTCTGAAATATC
ACAAAACGAAAATGAAAAAGAGACAATAAAGCAACAACAAAAGCAATGCTTTATCGCACAAATTGAACTTGCTTTAAATT
TACAAAAGCCGCTTATTGTGCATATTAGAGAAGCAAGCGCAGATAGCTTTGAGATTTTACAGGCTTATCCTCAGGCGCGT
GGAGTGTTGCATTGCTATAATGCAGATAGAATCTTGCTTAAACTAAGTGAGCGATTTTATTATGGAATCGGTGGAGTTTG
CACCTTTAAAAATGCTCGGCGAATTATTGAAGCGCTTCCGCTTATACCAAAGGAACGCATTGTGCTTGAAACTGATGCAC
CTTATCTCACGCCTCACCCATATAGGGGGACGCGCAATGAGCCGCATTATATTCCATTGATTATGCGTCAAATTGCTCAA
GTGCTTGGTATGAGTGAAGAGGAAGTGATAGATATAAGCACACACAACGCTATTACGCTTTTTAAAGAGATTCAATAA

Upstream 100 bases:

>100_bases
CCACTAAACATTAAAATTCCTTAGTTTGTTAAAGATAATTATGTTAGAATCTTGGCTTTATTCTAGCACAATTAGTATAA
TTTTAAGGATTTTTGGGCGT

Downstream 100 bases:

>100_bases
AGAAAGAGGAAGGAATGCCAATGAAAAATGCAAAGTGTCATATATGTTTGATAATTTTTGCTTTATTTTGTGTAGTAAAT
GTGTCATTGAGCGATGAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MSANFRYMVDTHCHLDSQSFENDLEQVIARAYEQNVAKIIIPGADIRTLPLAQNIAHTYPNVYFAAGVHPNEIVDFDIKV
LEEYAKDEKCIAIGECGLDYYRLSEISQNENEKETIKQQQKQCFIAQIELALNLQKPLIVHIREASADSFEILQAYPQAR
GVLHCYNADRILLKLSERFYYGIGGVCTFKNARRIIEALPLIPKERIVLETDAPYLTPHPYRGTRNEPHYIPLIMRQIAQ
VLGMSEEEVIDISTHNAITLFKEIQ

Sequences:

>Translated_265_residues
MSANFRYMVDTHCHLDSQSFENDLEQVIARAYEQNVAKIIIPGADIRTLPLAQNIAHTYPNVYFAAGVHPNEIVDFDIKV
LEEYAKDEKCIAIGECGLDYYRLSEISQNENEKETIKQQQKQCFIAQIELALNLQKPLIVHIREASADSFEILQAYPQAR
GVLHCYNADRILLKLSERFYYGIGGVCTFKNARRIIEALPLIPKERIVLETDAPYLTPHPYRGTRNEPHYIPLIMRQIAQ
VLGMSEEEVIDISTHNAITLFKEIQ
>Mature_264_residues
SANFRYMVDTHCHLDSQSFENDLEQVIARAYEQNVAKIIIPGADIRTLPLAQNIAHTYPNVYFAAGVHPNEIVDFDIKVL
EEYAKDEKCIAIGECGLDYYRLSEISQNENEKETIKQQQKQCFIAQIELALNLQKPLIVHIREASADSFEILQAYPQARG
VLHCYNADRILLKLSERFYYGIGGVCTFKNARRIIEALPLIPKERIVLETDAPYLTPHPYRGTRNEPHYIPLIMRQIAQV
LGMSEEEVIDISTHNAITLFKEIQ

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349734, Length=282, Percent_Identity=29.7872340425532, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI226061853, Length=290, Percent_Identity=29.6551724137931, Blast_Score=102, Evalue=2e-22,
Organism=Homo sapiens, GI110349730, Length=283, Percent_Identity=29.6819787985866, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI226061614, Length=270, Percent_Identity=28.5185185185185, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI225903424, Length=235, Percent_Identity=30.6382978723404, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI14042943, Length=281, Percent_Identity=27.0462633451957, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI226061595, Length=243, Percent_Identity=27.1604938271605, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI225903439, Length=259, Percent_Identity=25.4826254826255, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI1787342, Length=265, Percent_Identity=34.3396226415094, Blast_Score=158, Evalue=5e-40,
Organism=Escherichia coli, GI48994985, Length=269, Percent_Identity=32.7137546468402, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI87082439, Length=265, Percent_Identity=26.4150943396226, Blast_Score=97, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17559024, Length=289, Percent_Identity=30.4498269896194, Blast_Score=127, Evalue=5e-30,
Organism=Caenorhabditis elegans, GI71980746, Length=265, Percent_Identity=29.0566037735849, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17565396, Length=231, Percent_Identity=28.1385281385281, Blast_Score=64, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24648690, Length=296, Percent_Identity=31.7567567567568, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI221330018, Length=239, Percent_Identity=29.2887029288703, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24586117, Length=227, Percent_Identity=29.9559471365639, Blast_Score=87, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 30379; Mature: 30248

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSANFRYMVDTHCHLDSQSFENDLEQVIARAYEQNVAKIIIPGADIRTLPLAQNIAHTYP
CCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCEECHHHHHHHHHCC
NVYFAAGVHPNEIVDFDIKVLEEYAKDEKCIAIGECGLDYYRLSEISQNENEKETIKQQQ
CEEEEECCCCCCEEHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHH
KQCFIAQIELALNLQKPLIVHIREASADSFEILQAYPQARGVLHCYNADRILLKLSERFY
HHHHHHHHEEHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCEEEEECCCEEEEEEHHHHH
YGIGGVCTFKNARRIIEALPLIPKERIVLETDAPYLTPHPYRGTRNEPHYIPLIMRQIAQ
CCCCCEEEHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
VLGMSEEEVIDISTHNAITLFKEIQ
HHCCCHHHEEEEECCCEEEEEEECC
>Mature Secondary Structure 
SANFRYMVDTHCHLDSQSFENDLEQVIARAYEQNVAKIIIPGADIRTLPLAQNIAHTYP
CCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCEECHHHHHHHHHCC
NVYFAAGVHPNEIVDFDIKVLEEYAKDEKCIAIGECGLDYYRLSEISQNENEKETIKQQQ
CEEEEECCCCCCEEHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHH
KQCFIAQIELALNLQKPLIVHIREASADSFEILQAYPQARGVLHCYNADRILLKLSERFY
HHHHHHHHEEHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCEEEEECCCEEEEEEHHHHH
YGIGGVCTFKNARRIIEALPLIPKERIVLETDAPYLTPHPYRGTRNEPHYIPLIMRQIAQ
CCCCCEEEHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
VLGMSEEEVIDISTHNAITLFKEIQ
HHCCCHHHEEEEECCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]