| Definition | Helicobacter hepaticus ATCC 51449 chromosome, complete genome. |
|---|---|
| Accession | NC_004917 |
| Length | 1,799,146 |
Click here to switch to the map view.
The map label for this gene is copA [H]
Identifier: 32266521
GI number: 32266521
Start: 998096
End: 1000483
Strand: Direct
Name: copA [H]
Synonym: HH1022
Alternate gene names: 32266521
Gene position: 998096-1000483 (Clockwise)
Preceding gene: 32266520
Following gene: 32266522
Centisome position: 55.48
GC content: 36.39
Gene sequence:
>2388_bases GTGTATTTTTTACTCCAAAAGTCCTCACTCACAAGCTTTTATGATAAGCTCACAAGCCCTCTCACTCCACCAACACTTGA TACACACAATGATTTAGCACGATTTGATACAGACGCGTTTATGCAAAAATACGTCCATACCATTACAAAAGATGAGATGA AACTCTGCGAAGTGCATTTAATCATTAGCGGAATTCATTGTGCAGCGTGTATTTGGCTCAATGAAAAGCTCCTTTTAGCG CAGGAAGGAATTATAAGCGCCACAATTAATTACACAAACAACAAAGCAACAATTGTATGGGATAGAAACAAGCTTCCTTT AAGCACTATTATCACTCTTATTCAATCTATAGGATATGATGCGTATGTATATGATAGCCGAATTCAAGAAAGTGCAGATA AAAAGCAAATGAAAGAATACTATATACGCGTTATTGTTGCGCTTTTTTGCACAATGAATATTATGTGGGTAGCCATTGCA CAATATAGTGGATATTTTCTTGGTATCACTAAGGAAGCAAAAGATATTTTGAATCTTGCCTCATTTATCCTCTGCACTCC TGCACTTTTTTACTCTGGGTGGGTGTTTTTTCGCTCAAGTTATTATGGATTAAGAAATGGTTTTGTGGGTATGGATTTAC TCGTTGCTGTTGGCTCTACATTGACTTATTTTTATTCTATATATGCTGCTATTACGCACAGTGGAGAGACTTATTTTGAA TCTGTGAGTATGATTATCACCTTTGTATTAATTGGTAAGTTTTTAGAAGTTCGAGCACGCAAAAATGCAGGGGATAGCCT TGATAAACTCAATCATCTACTACCCACAAGTGTGGAACTCTGTGATAAACAAAATCCTCATCTCACACGTCAAGTTACTC CAGAAGAGGTGCAAATTGGTGATATGATTCTTGTAAAAGCAGGTGAAAAAATTGCCATTGATGGCATTTTGCTCAGTCAA AGAGCAATTTTTGATACAAAAGCAATCAGTGGTGAATCCTTGCCTATAGAATCTAAAGAAGGCGATGAGATTCTCTCCGG CTATGTTAATCTTAACCATCAAATTTTTTATCAAGCGACCAAAATATTCTCACAAAGCCTTATGAGCCATATTATCGAAC TTGTAAGCGCTTCTCTTAATTATAAACCACATATACAGAATCTTGCTAATAGCCTCTCGCAGTATTTTTCACGTGTGATT TTAAGTATAGCTTTACTTTGTTTTTTAGGCTGGTATTTCATAGGAAATGTAGGGGTTGAAAAATCGCTTATGGTAGCTAT ATCTGTGATTATTATCGCTTGTCCTTGTGCGTTGGCTTTGGCTACGCCTATTGCTTCTGTAGTTGGTATTGGCGAATCTT ATCGCCACAATGTGCTTTTCAAACAAGCAAAATTCCTTGAAAGTCTTGCAAAAGCAAATATAGTTATCTTTGATAAAACA GGAACACTTACTATTGGCAAACCAAAGGTGCAACAATGTTACATACAATCCGCTTATGATAAGCAACTTTTACGTGAGTT TGTGCGATTAAGCAAACATCCTGTGGCACTAGGAATTTTTGATTTTTTGGATACTCATACAGATTCAAGCACACAAGAAA CTATATGGAATCTTAAGGACTTTCAGCAATTTGATGCACAAGGTATTTCTGCTTTGGTAGAGAGTGAAAATCAAAGTATT ACACTTGTAGGAGGAAATTTAGAATTTTTGCAAAATAAGGGCTTTATTCTCCCGAAACTTACAATTAATAAAGGTATGGT CTTTGCCTATGGTATGCAAAAAAATGAAGAAAATATTTTACTTGAAATTTTTGAGCTCTATGATGAACCAAAACCCTATG CTAAAACTTTAATAGAATCTCTTCATAAACGTGGGATTGCCACAGCACTTCTTAGCGGTGATAGAGCGGAGAGCGTAGAG CAAATCAGCTCACTTATAAACATTCAAGAATCTCATCATAGTCTCTCGCCCTTACAAAAGGCAGAATGGATAGAATCTTA TAAACATAAACACCCTCGCAATGTGCTTGTGATGGTGGGCGATGGGATCAATGATGCACCTGCGCTTAGTAAGAGCGATA TTGCTATTTCTATGGGTGCAGGGAGTGATATTGCTATTTTAAGTAGCGATGTAGTCATTCTTGATGATAAACTCTCCACG CTACATAATGCCTTTGAAATCGCCCATAGAACTTATGTTAGTATCAAGCAAAATATAGCTTTGAGCATCGGCTATAATGC TTTAAGCGTGCCAATAGCTACTGCTGGACTTGTAATACCGCTTTTCGCTGCGCTTTCTATGAGTCTAAGCTCTCTTATTG TAGTATTTAATTCTATGCGATTAAAATATTTTAAAGGTGAAACACAAAATGAAAATAAAAATGGGTAG
Upstream 100 bases:
>100_bases ATGTTCCCATTGTCAGCTTGAATATGATATTTCACAACTAAGCACACGCTACAATGAGCAAGGCGAGGAGTTGCATTTTT GCTGTAATGGCTGTGAGAGT
Downstream 100 bases:
>100_bases ATTCTAAAGAAGACAAACAAAATCTCATAAGAATATAAATTATTTTAGTTGTTCTTGTGAAAATTTAGCGTAATATAAAG ATGTTTCATTTTATTTTAAG
Product: cation-transporting ATPase
Products: ADP; Orthophosphate. [C]
Alternate protein names: NA
Number of amino acids: Translated: 795; Mature: 795
Protein sequence:
>795_residues MYFLLQKSSLTSFYDKLTSPLTPPTLDTHNDLARFDTDAFMQKYVHTITKDEMKLCEVHLIISGIHCAACIWLNEKLLLA QEGIISATINYTNNKATIVWDRNKLPLSTIITLIQSIGYDAYVYDSRIQESADKKQMKEYYIRVIVALFCTMNIMWVAIA QYSGYFLGITKEAKDILNLASFILCTPALFYSGWVFFRSSYYGLRNGFVGMDLLVAVGSTLTYFYSIYAAITHSGETYFE SVSMIITFVLIGKFLEVRARKNAGDSLDKLNHLLPTSVELCDKQNPHLTRQVTPEEVQIGDMILVKAGEKIAIDGILLSQ RAIFDTKAISGESLPIESKEGDEILSGYVNLNHQIFYQATKIFSQSLMSHIIELVSASLNYKPHIQNLANSLSQYFSRVI LSIALLCFLGWYFIGNVGVEKSLMVAISVIIIACPCALALATPIASVVGIGESYRHNVLFKQAKFLESLAKANIVIFDKT GTLTIGKPKVQQCYIQSAYDKQLLREFVRLSKHPVALGIFDFLDTHTDSSTQETIWNLKDFQQFDAQGISALVESENQSI TLVGGNLEFLQNKGFILPKLTINKGMVFAYGMQKNEENILLEIFELYDEPKPYAKTLIESLHKRGIATALLSGDRAESVE QISSLINIQESHHSLSPLQKAEWIESYKHKHPRNVLVMVGDGINDAPALSKSDIAISMGAGSDIAILSSDVVILDDKLST LHNAFEIAHRTYVSIKQNIALSIGYNALSVPIATAGLVIPLFAALSMSLSSLIVVFNSMRLKYFKGETQNENKNG
Sequences:
>Translated_795_residues MYFLLQKSSLTSFYDKLTSPLTPPTLDTHNDLARFDTDAFMQKYVHTITKDEMKLCEVHLIISGIHCAACIWLNEKLLLA QEGIISATINYTNNKATIVWDRNKLPLSTIITLIQSIGYDAYVYDSRIQESADKKQMKEYYIRVIVALFCTMNIMWVAIA QYSGYFLGITKEAKDILNLASFILCTPALFYSGWVFFRSSYYGLRNGFVGMDLLVAVGSTLTYFYSIYAAITHSGETYFE SVSMIITFVLIGKFLEVRARKNAGDSLDKLNHLLPTSVELCDKQNPHLTRQVTPEEVQIGDMILVKAGEKIAIDGILLSQ RAIFDTKAISGESLPIESKEGDEILSGYVNLNHQIFYQATKIFSQSLMSHIIELVSASLNYKPHIQNLANSLSQYFSRVI LSIALLCFLGWYFIGNVGVEKSLMVAISVIIIACPCALALATPIASVVGIGESYRHNVLFKQAKFLESLAKANIVIFDKT GTLTIGKPKVQQCYIQSAYDKQLLREFVRLSKHPVALGIFDFLDTHTDSSTQETIWNLKDFQQFDAQGISALVESENQSI TLVGGNLEFLQNKGFILPKLTINKGMVFAYGMQKNEENILLEIFELYDEPKPYAKTLIESLHKRGIATALLSGDRAESVE QISSLINIQESHHSLSPLQKAEWIESYKHKHPRNVLVMVGDGINDAPALSKSDIAISMGAGSDIAILSSDVVILDDKLST LHNAFEIAHRTYVSIKQNIALSIGYNALSVPIATAGLVIPLFAALSMSLSSLIVVFNSMRLKYFKGETQNENKNG >Mature_795_residues MYFLLQKSSLTSFYDKLTSPLTPPTLDTHNDLARFDTDAFMQKYVHTITKDEMKLCEVHLIISGIHCAACIWLNEKLLLA QEGIISATINYTNNKATIVWDRNKLPLSTIITLIQSIGYDAYVYDSRIQESADKKQMKEYYIRVIVALFCTMNIMWVAIA QYSGYFLGITKEAKDILNLASFILCTPALFYSGWVFFRSSYYGLRNGFVGMDLLVAVGSTLTYFYSIYAAITHSGETYFE SVSMIITFVLIGKFLEVRARKNAGDSLDKLNHLLPTSVELCDKQNPHLTRQVTPEEVQIGDMILVKAGEKIAIDGILLSQ RAIFDTKAISGESLPIESKEGDEILSGYVNLNHQIFYQATKIFSQSLMSHIIELVSASLNYKPHIQNLANSLSQYFSRVI LSIALLCFLGWYFIGNVGVEKSLMVAISVIIIACPCALALATPIASVVGIGESYRHNVLFKQAKFLESLAKANIVIFDKT GTLTIGKPKVQQCYIQSAYDKQLLREFVRLSKHPVALGIFDFLDTHTDSSTQETIWNLKDFQQFDAQGISALVESENQSI TLVGGNLEFLQNKGFILPKLTINKGMVFAYGMQKNEENILLEIFELYDEPKPYAKTLIESLHKRGIATALLSGDRAESVE QISSLINIQESHHSLSPLQKAEWIESYKHKHPRNVLVMVGDGINDAPALSKSDIAISMGAGSDIAILSSDVVILDDKLST LHNAFEIAHRTYVSIKQNIALSIGYNALSVPIATAGLVIPLFAALSMSLSSLIVVFNSMRLKYFKGETQNENKNG
Specific function: Involved in copper export [H]
COG id: COG2217
COG function: function code P; Cation transport ATPase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 HMA domains [H]
Homologues:
Organism=Homo sapiens, GI115529486, Length=824, Percent_Identity=26.2135922330097, Blast_Score=289, Evalue=9e-78, Organism=Homo sapiens, GI55743071, Length=799, Percent_Identity=26.7834793491865, Blast_Score=286, Evalue=5e-77, Organism=Homo sapiens, GI55743073, Length=522, Percent_Identity=27.0114942528736, Blast_Score=191, Evalue=2e-48, Organism=Homo sapiens, GI297374799, Length=189, Percent_Identity=29.6296296296296, Blast_Score=72, Evalue=2e-12, Organism=Homo sapiens, GI83700225, Length=189, Percent_Identity=29.6296296296296, Blast_Score=72, Evalue=2e-12, Organism=Homo sapiens, GI27886529, Length=142, Percent_Identity=29.5774647887324, Blast_Score=70, Evalue=7e-12, Organism=Homo sapiens, GI10835220, Length=142, Percent_Identity=29.5774647887324, Blast_Score=70, Evalue=8e-12, Organism=Homo sapiens, GI310128958, Length=142, Percent_Identity=29.5774647887324, Blast_Score=70, Evalue=1e-11, Organism=Homo sapiens, GI48255949, Length=118, Percent_Identity=33.0508474576271, Blast_Score=69, Evalue=2e-11, Organism=Homo sapiens, GI51944966, Length=191, Percent_Identity=26.1780104712042, Blast_Score=69, Evalue=3e-11, Organism=Homo sapiens, GI48255951, Length=118, Percent_Identity=33.0508474576271, Blast_Score=69, Evalue=3e-11, Organism=Escherichia coli, GI1786691, Length=758, Percent_Identity=29.023746701847, Blast_Score=307, Evalue=2e-84, Organism=Escherichia coli, GI1789879, Length=725, Percent_Identity=24.6896551724138, Blast_Score=192, Evalue=9e-50, Organism=Escherichia coli, GI1786914, Length=538, Percent_Identity=22.3048327137546, Blast_Score=103, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17556548, Length=801, Percent_Identity=26.4669163545568, Blast_Score=241, Evalue=8e-64, Organism=Caenorhabditis elegans, GI17559224, Length=157, Percent_Identity=29.2993630573248, Blast_Score=69, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6320475, Length=755, Percent_Identity=26.887417218543, Blast_Score=253, Evalue=1e-67, Organism=Saccharomyces cerevisiae, GI6319772, Length=641, Percent_Identity=28.2371294851794, Blast_Score=231, Evalue=4e-61, Organism=Saccharomyces cerevisiae, GI6321430, Length=576, Percent_Identity=23.6111111111111, Blast_Score=110, Evalue=6e-25, Organism=Saccharomyces cerevisiae, GI6325221, Length=575, Percent_Identity=23.304347826087, Blast_Score=110, Evalue=8e-25, Organism=Saccharomyces cerevisiae, GI6321271, Length=185, Percent_Identity=30.8108108108108, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI221329854, Length=520, Percent_Identity=26.5384615384615, Blast_Score=191, Evalue=2e-48, Organism=Drosophila melanogaster, GI281366617, Length=159, Percent_Identity=27.6729559748428, Blast_Score=74, Evalue=5e-13, Organism=Drosophila melanogaster, GI24668704, Length=159, Percent_Identity=27.6729559748428, Blast_Score=74, Evalue=5e-13, Organism=Drosophila melanogaster, GI24668708, Length=159, Percent_Identity=27.6729559748428, Blast_Score=74, Evalue=5e-13, Organism=Drosophila melanogaster, GI24668696, Length=159, Percent_Identity=27.6729559748428, Blast_Score=73, Evalue=7e-13, Organism=Drosophila melanogaster, GI161085803, Length=159, Percent_Identity=27.6729559748428, Blast_Score=73, Evalue=8e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008250 - InterPro: IPR006403 - InterPro: IPR001366 - InterPro: IPR006416 - InterPro: IPR001757 - InterPro: IPR018303 - InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR017969 - InterPro: IPR006121 - InterPro: IPR000150 [H]
Pfam domain/function: PF00122 E1-E2_ATPase; PF00403 HMA; PF00702 Hydrolase [H]
EC number: 3.6.3.4 [C]
Molecular weight: Translated: 88572; Mature: 88572
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: PS00154 ATPASE_E1_E2 ; PS50846 HMA_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYFLLQKSSLTSFYDKLTSPLTPPTLDTHNDLARFDTDAFMQKYVHTITKDEMKLCEVHL CEEEEECCHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH IISGIHCAACIWLNEKLLLAQEGIISATINYTNNKATIVWDRNKLPLSTIITLIQSIGYD HHHHHHHHHEEEECCEEEEECCCCEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHCCCC AYVYDSRIQESADKKQMKEYYIRVIVALFCTMNIMWVAIAQYSGYFLGITKEAKDILNLA EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHH SFILCTPALFYSGWVFFRSSYYGLRNGFVGMDLLVAVGSTLTYFYSIYAAITHSGETYFE HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH SVSMIITFVLIGKFLEVRARKNAGDSLDKLNHLLPTSVELCDKQNPHLTRQVTPEEVQIG HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCEEEC DMILVKAGEKIAIDGILLSQRAIFDTKAISGESLPIESKEGDEILSGYVNLNHQIFYQAT CEEEEECCCEEEEEEEEECCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH KIFSQSLMSHIIELVSASLNYKPHIQNLANSLSQYFSRVILSIALLCFLGWYFIGNVGVE HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC KSLMVAISVIIIACPCALALATPIASVVGIGESYRHNVLFKQAKFLESLAKANIVIFDKT HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECC GTLTIGKPKVQQCYIQSAYDKQLLREFVRLSKHPVALGIFDFLDTHTDSSTQETIWNLKD CEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHCCCCCCHHHHHHCHHH FQQFDAQGISALVESENQSITLVGGNLEFLQNKGFILPKLTINKGMVFAYGMQKNEENIL HHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCCEEEEEEEECCCEEEEECCCCCCCHHH LEIFELYDEPKPYAKTLIESLHKRGIATALLSGDRAESVEQISSLINIQESHHSLSPLQK HHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHH AEWIESYKHKHPRNVLVMVGDGINDAPALSKSDIAISMGAGSDIAILSSDVVILDDKLST HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCEEEEECCEEEECCHHHH LHNAFEIAHRTYVSIKQNIALSIGYNALSVPIATAGLVIPLFAALSMSLSSLIVVFNSMR HHHHHHHHHHHHHHHHHCEEEEECCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKYFKGETQNENKNG EEEECCCCCCCCCCC >Mature Secondary Structure MYFLLQKSSLTSFYDKLTSPLTPPTLDTHNDLARFDTDAFMQKYVHTITKDEMKLCEVHL CEEEEECCHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH IISGIHCAACIWLNEKLLLAQEGIISATINYTNNKATIVWDRNKLPLSTIITLIQSIGYD HHHHHHHHHEEEECCEEEEECCCCEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHCCCC AYVYDSRIQESADKKQMKEYYIRVIVALFCTMNIMWVAIAQYSGYFLGITKEAKDILNLA EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHH SFILCTPALFYSGWVFFRSSYYGLRNGFVGMDLLVAVGSTLTYFYSIYAAITHSGETYFE HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH SVSMIITFVLIGKFLEVRARKNAGDSLDKLNHLLPTSVELCDKQNPHLTRQVTPEEVQIG HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCEEEC DMILVKAGEKIAIDGILLSQRAIFDTKAISGESLPIESKEGDEILSGYVNLNHQIFYQAT CEEEEECCCEEEEEEEEECCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH KIFSQSLMSHIIELVSASLNYKPHIQNLANSLSQYFSRVILSIALLCFLGWYFIGNVGVE HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC KSLMVAISVIIIACPCALALATPIASVVGIGESYRHNVLFKQAKFLESLAKANIVIFDKT HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECC GTLTIGKPKVQQCYIQSAYDKQLLREFVRLSKHPVALGIFDFLDTHTDSSTQETIWNLKD CEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHCCCCCCHHHHHHCHHH FQQFDAQGISALVESENQSITLVGGNLEFLQNKGFILPKLTINKGMVFAYGMQKNEENIL HHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCCEEEEEEEECCCEEEEECCCCCCCHHH LEIFELYDEPKPYAKTLIESLHKRGIATALLSGDRAESVEQISSLINIQESHHSLSPLQK HHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHH AEWIESYKHKHPRNVLVMVGDGINDAPALSKSDIAISMGAGSDIAILSSDVVILDDKLST HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCEEEEECCEEEECCHHHH LHNAFEIAHRTYVSIKQNIALSIGYNALSVPIATAGLVIPLFAALSMSLSSLIVVFNSMR HHHHHHHHHHHHHHHHHCEEEEECCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKYFKGETQNENKNG EEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Cu [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; H2O [C]
Specific reaction: ATP + H2O = ADP + Orthophosphate. [C]
General reaction: Phosphorous acid anhydride hydrolysis [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA