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The map label for this gene is yocR [H]

Identifier: 32266310

GI number: 32266310

Start: 789458

End: 790855

Strand: Direct

Name: yocR [H]

Synonym: HH0811

Alternate gene names: 32266310

Gene position: 789458-790855 (Clockwise)

Preceding gene: 32266309

Following gene: 32266343

Centisome position: 43.88

GC content: 39.48

Gene sequence:

>1398_bases
ATGAATCATTTTAGCAAAATTGGTTTTATCCTCGCTGCACTTGGAAGCTCTATCGGCTTAGGGCATATTTGGCGTTTTCC
CTACATAGCAGGGACAAACGGCGGTGGTGCATTTGTCTTACTCTATTTATTTTTGGCACTCTCACTTGGCATTGCAATGC
TTATTGGCGAAATGCTTATTGGGAACAAGGGGGGGGGCGCCAATGCTGTCAAAAGCTATGAAAATCTTGATGTGAGCTCA
AGTAAAAAATGGCGTTTAGCTGGATTTACACTTATTGGCGGTCCTATTATCTTATCTTTTTATGCTATCGTGCTAGGCTG
GGTGTTTTACTATCTCTTTATAGTGAGCTTTAACCTCCCTAGCGATATGCACACCTCTGAAACAATTTTTAATACCCTCT
ATACAAATGGTTTTGTGCCCCAAACACTTGGTTTGCTTTTTGTTATGGGAATCACAGCGTGGGTTATTTCGCGCGGTGTG
AAAAAAGGTATTGAAGCCTTGAATCTTATCCTCACACCGCTTCTTTTCATTATATTTTTTGGCTTATTGCTCTATGCGAT
GAGTATGGATTCTTTTAGCAAAGCATTACATTTTATGTTGAGTTTTGATATAAATGAAGCAAAAAAAGCCCTCACACTTA
ATGTATTTATTGATTCTCTAGGGCAGGTGTTTTTCTCGCTTTCACTCGGGGTAGGTATCATCATCACTTATGCCGCTTCC
TCGCAAAGCAATCAAAATCTCCTTAAAAGCGCACTTTGGGTAGTGCTATCTGGAATTTTAATCGCTATTATGGCTGGACT
TATGATTTTTACTTTTGTATATGAATATAATGGAGCAGTAGGAGGAGGTGCTGGGCTTATTTTTATAACTTTGCCCGTTA
TGCTCTCTCATCTTGGTATATGGGGCAATGTCATCGCATTTTTATTCCTCATTGCCTTTAGTTTTGCAGGCATTACCTCT
GCGATTTCACTCCTTGAACCCGCCGTTATGTATGTATGCGAAACTTACCATTGGAGCAGAGCAAAGGCAACTTGGAGCAT
TGCTGGAGCAATTAGCGCACTTGGTATAATTATTATTTGCTCTATTTGCACACCTATGGCAGATTATCTTACTATTGGTG
GTAAAACGCTTATGGATAGCATTGAATTTCTCTCTGCAAATATCATTATGACACTCGGGGGACTTTTGGCTGTTACATTT
ATCGGCTGGGCTGTGCCAAAGGCTCAATTACAACAGCACACCGCACATTTTTTTAACAACATTGCTTTTACTCTTTGGTA
TATCATTATGCGCTATATTGCTCCGCTTATTACTATTATGATACTTGTAGCAGTGAGTATAAAATTTTTTACAGGAGAGG
ACGCGGTAGATTTTATTTTTACATCTTTAGGGCTGTGA

Upstream 100 bases:

>100_bases
ATATGTGAGAGATTTATTCATAGTTACCGCCCTTTACCCACTTAAGATTAACTTATTTTAGATAAATTATACAAAGTTTC
ATATTATTTAAAGGTTATTA

Downstream 100 bases:

>100_bases
GTGAGAAATCTAATCTTTTAGAGTATATAACCACCATAATATAAAATGAGCCAAAAGCTTCTAGCCCTTATAAAAAAGAG
TAAAAACTTTGGCTAAATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MNHFSKIGFILAALGSSIGLGHIWRFPYIAGTNGGGAFVLLYLFLALSLGIAMLIGEMLIGNKGGGANAVKSYENLDVSS
SKKWRLAGFTLIGGPIILSFYAIVLGWVFYYLFIVSFNLPSDMHTSETIFNTLYTNGFVPQTLGLLFVMGITAWVISRGV
KKGIEALNLILTPLLFIIFFGLLLYAMSMDSFSKALHFMLSFDINEAKKALTLNVFIDSLGQVFFSLSLGVGIIITYAAS
SQSNQNLLKSALWVVLSGILIAIMAGLMIFTFVYEYNGAVGGGAGLIFITLPVMLSHLGIWGNVIAFLFLIAFSFAGITS
AISLLEPAVMYVCETYHWSRAKATWSIAGAISALGIIIICSICTPMADYLTIGGKTLMDSIEFLSANIIMTLGGLLAVTF
IGWAVPKAQLQQHTAHFFNNIAFTLWYIIMRYIAPLITIMILVAVSIKFFTGEDAVDFIFTSLGL

Sequences:

>Translated_465_residues
MNHFSKIGFILAALGSSIGLGHIWRFPYIAGTNGGGAFVLLYLFLALSLGIAMLIGEMLIGNKGGGANAVKSYENLDVSS
SKKWRLAGFTLIGGPIILSFYAIVLGWVFYYLFIVSFNLPSDMHTSETIFNTLYTNGFVPQTLGLLFVMGITAWVISRGV
KKGIEALNLILTPLLFIIFFGLLLYAMSMDSFSKALHFMLSFDINEAKKALTLNVFIDSLGQVFFSLSLGVGIIITYAAS
SQSNQNLLKSALWVVLSGILIAIMAGLMIFTFVYEYNGAVGGGAGLIFITLPVMLSHLGIWGNVIAFLFLIAFSFAGITS
AISLLEPAVMYVCETYHWSRAKATWSIAGAISALGIIIICSICTPMADYLTIGGKTLMDSIEFLSANIIMTLGGLLAVTF
IGWAVPKAQLQQHTAHFFNNIAFTLWYIIMRYIAPLITIMILVAVSIKFFTGEDAVDFIFTSLGL
>Mature_465_residues
MNHFSKIGFILAALGSSIGLGHIWRFPYIAGTNGGGAFVLLYLFLALSLGIAMLIGEMLIGNKGGGANAVKSYENLDVSS
SKKWRLAGFTLIGGPIILSFYAIVLGWVFYYLFIVSFNLPSDMHTSETIFNTLYTNGFVPQTLGLLFVMGITAWVISRGV
KKGIEALNLILTPLLFIIFFGLLLYAMSMDSFSKALHFMLSFDINEAKKALTLNVFIDSLGQVFFSLSLGVGIIITYAAS
SQSNQNLLKSALWVVLSGILIAIMAGLMIFTFVYEYNGAVGGGAGLIFITLPVMLSHLGIWGNVIAFLFLIAFSFAGITS
AISLLEPAVMYVCETYHWSRAKATWSIAGAISALGIIIICSICTPMADYLTIGGKTLMDSIEFLSANIIMTLGGLLAVTF
IGWAVPKAQLQQHTAHFFNNIAFTLWYIIMRYIAPLITIMILVAVSIKFFTGEDAVDFIFTSLGL

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI289191351, Length=524, Percent_Identity=22.1374045801527, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI4557046, Length=524, Percent_Identity=22.1374045801527, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI289191377, Length=522, Percent_Identity=22.2222222222222, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI4507041, Length=514, Percent_Identity=22.1789883268482, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI134304856, Length=352, Percent_Identity=25.5681818181818, Blast_Score=80, Evalue=5e-15,
Organism=Homo sapiens, GI58219014, Length=305, Percent_Identity=26.8852459016393, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI33354281, Length=306, Percent_Identity=26.4705882352941, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI194018524, Length=310, Percent_Identity=25.8064516129032, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI21361581, Length=396, Percent_Identity=24.2424242424242, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI188528618, Length=381, Percent_Identity=21.7847769028871, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI21361693, Length=133, Percent_Identity=33.8345864661654, Blast_Score=69, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17554804, Length=482, Percent_Identity=23.2365145228216, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24661428, Length=495, Percent_Identity=22.4242424242424, Blast_Score=92, Evalue=8e-19,
Organism=Drosophila melanogaster, GI17136952, Length=370, Percent_Identity=24.0540540540541, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI281364394, Length=370, Percent_Identity=24.0540540540541, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI28574704, Length=370, Percent_Identity=24.0540540540541, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI17136950, Length=370, Percent_Identity=24.0540540540541, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI28574702, Length=370, Percent_Identity=24.0540540540541, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24652942, Length=498, Percent_Identity=22.6907630522088, Blast_Score=90, Evalue=4e-18,
Organism=Drosophila melanogaster, GI45551088, Length=498, Percent_Identity=22.6907630522088, Blast_Score=89, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24762620, Length=506, Percent_Identity=23.5177865612648, Blast_Score=89, Evalue=8e-18,
Organism=Drosophila melanogaster, GI281365034, Length=495, Percent_Identity=23.2323232323232, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI281363702, Length=488, Percent_Identity=25.2049180327869, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI19921936, Length=495, Percent_Identity=23.4343434343434, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI19921352, Length=504, Percent_Identity=22.2222222222222, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24584353, Length=504, Percent_Identity=22.2222222222222, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24582567, Length=476, Percent_Identity=23.7394957983193, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24655079, Length=294, Percent_Identity=25.8503401360544, Blast_Score=73, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 50475; Mature: 50475

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHFSKIGFILAALGSSIGLGHIWRFPYIAGTNGGGAFVLLYLFLALSLGIAMLIGEMLI
CCCHHHHHHHHHHHHCCCCCCHHEECCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GNKGGGANAVKSYENLDVSSSKKWRLAGFTLIGGPIILSFYAIVLGWVFYYLFIVSFNLP
CCCCCCCHHHHHHHCCCCCCCCCEEEECEEHEHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SDMHTSETIFNTLYTNGFVPQTLGLLFVMGITAWVISRGVKKGIEALNLILTPLLFIIFF
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLLLYAMSMDSFSKALHFMLSFDINEAKKALTLNVFIDSLGQVFFSLSLGVGIIITYAAS
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEECC
SQSNQNLLKSALWVVLSGILIAIMAGLMIFTFVYEYNGAVGGGAGLIFITLPVMLSHLGI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCH
WGNVIAFLFLIAFSFAGITSAISLLEPAVMYVCETYHWSRAKATWSIAGAISALGIIIIC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHHH
SICTPMADYLTIGGKTLMDSIEFLSANIIMTLGGLLAVTFIGWAVPKAQLQQHTAHFFNN
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
IAFTLWYIIMRYIAPLITIMILVAVSIKFFTGEDAVDFIFTSLGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MNHFSKIGFILAALGSSIGLGHIWRFPYIAGTNGGGAFVLLYLFLALSLGIAMLIGEMLI
CCCHHHHHHHHHHHHCCCCCCHHEECCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GNKGGGANAVKSYENLDVSSSKKWRLAGFTLIGGPIILSFYAIVLGWVFYYLFIVSFNLP
CCCCCCCHHHHHHHCCCCCCCCCEEEECEEHEHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SDMHTSETIFNTLYTNGFVPQTLGLLFVMGITAWVISRGVKKGIEALNLILTPLLFIIFF
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLLLYAMSMDSFSKALHFMLSFDINEAKKALTLNVFIDSLGQVFFSLSLGVGIIITYAAS
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEECC
SQSNQNLLKSALWVVLSGILIAIMAGLMIFTFVYEYNGAVGGGAGLIFITLPVMLSHLGI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCH
WGNVIAFLFLIAFSFAGITSAISLLEPAVMYVCETYHWSRAKATWSIAGAISALGIIIIC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHHH
SICTPMADYLTIGGKTLMDSIEFLSANIIMTLGGLLAVTFIGWAVPKAQLQQHTAHFFNN
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
IAFTLWYIIMRYIAPLITIMILVAVSIKFFTGEDAVDFIFTSLGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]