| Definition | Helicobacter hepaticus ATCC 51449 chromosome, complete genome. |
|---|---|
| Accession | NC_004917 |
| Length | 1,799,146 |
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The map label for this gene is yibP [C]
Identifier: 32266287
GI number: 32266287
Start: 764353
End: 765624
Strand: Direct
Name: yibP [C]
Synonym: HH0788
Alternate gene names: 32266287
Gene position: 764353-765624 (Clockwise)
Preceding gene: 32266286
Following gene: 32266288
Centisome position: 42.48
GC content: 32.7
Gene sequence:
>1272_bases TTGTATCTATCGTCTCGGTGGTTTTTGTCATTATTAAACAAAAAGACCTGTGAATCTAATATGAGGGGTTTTGGTTGGAT TGCAATATGTGCCATTATAAATATATGTATGGCAAATATTGACCAAGATATTGCAAAAAATAAAGATAAACTTGCTACTG CCAAATCCCAAGAAAAAGCTATTAGCAAAAAACTTGATGTTTTGGGCAAAGCAATTAATGCGAAAAATTCTGAGCTCACA CAACTTGGGAATCAAATTAACGCCTTAGAAAAAGATATAGAACAAAATCAAGGCAAATCTCTCTCACAAGAAAAATCACT TAAAGATTCTCAAAAAAAACAAAATGTGCTTGTAGAACAAAAACTTCAGATTGAAAAACAACTTATTAAGCTTATTGCAC AAGGTATTGCTTTTAATATGGTGATTAGCCGCTCTGCAGATATTGATTCTGTTGATGGTGTAGTGCAATATCATATTTAT CAAATTCTACATAAAAACGCGCGCAACTCTATTAAAACGCTTAACGCTAAACACAATCTCCTCAATAATGAAATCAAACA AATAAGTAATGCAATTTCTCAAATTCAAAGCTCCATTAAAACTCAAACTAATAAAAAAGAACGTCTCCAAATCGCAAAAG AACAACAAAAAGCCACTCTTGCAAAAATGCAAACTGAACTTAAAACCTATGACCAGCAGCTTAAAGACATTGTCAAAGAG CGCAAAAGCCTTGATGAGATTCTCTCAAAACTCAATATCGTTAAAGAGCAAAAACAACAAGGCTCCAATCAGCAAGCCTT TATAAATAACCAAAAAAACCCAAGTAGTATTAAAGCCCCAAAACAATTTGGCACTTCATATCGTGATGTGCCTACCATTG CCTACAAAGGAGCTAAAACCTTTTCACCACTTGATAACTATGTCATTGAAAAAAAGTTTGGACCTTATTTTGACCCTGTA TATAAATTTAAAATTTTTAATGCTGCAATTATGCTTAATCCCAAATCTCCCAACGCTCCTGTCAAGAATGTGCTTGATGG GAGAATAGTATATGCCAAAGAAGCACCAGGGCTTAAAAAAGTTGTTATTATTGAGCATAACAATGCTATCCATACTATTT ACGCATATATGGACAAAATAGAATCTTCAATTAAAACAGGTATACCTATTAAAAAAGGCACGATTATTGGCAAAGTCAAT GAACGTTTAAGCTTTGAAATCACTCAAAAAGATAAACATATTAACCCTGCAGATTTTATAAAACTCAACTAA
Upstream 100 bases:
>100_bases AACCACGACAAAATGCAAGAAGTGTTTCACACGCTTGAAGTAACAAGCGATATATTCCGTATGGGAAGTGATTTTATCAT TCTTCTTTTTACATCTATAC
Downstream 100 bases:
>100_bases AAAAATAAAATTTTTATCCGATGTATCCTTGTATTTAACTTCAAGGAGGAAGCTATGCTTAATGATATTAATAGCGTTAA TAGCACCAATAATACCATTA
Product: hypothetical protein
Products: NA
Alternate protein names: Peptidase M; Peptidase; Metallopeptidase; Transaldolase; M23 Peptidase Domain Protein
Number of amino acids: Translated: 423; Mature: 423
Protein sequence:
>423_residues MYLSSRWFLSLLNKKTCESNMRGFGWIAICAIINICMANIDQDIAKNKDKLATAKSQEKAISKKLDVLGKAINAKNSELT QLGNQINALEKDIEQNQGKSLSQEKSLKDSQKKQNVLVEQKLQIEKQLIKLIAQGIAFNMVISRSADIDSVDGVVQYHIY QILHKNARNSIKTLNAKHNLLNNEIKQISNAISQIQSSIKTQTNKKERLQIAKEQQKATLAKMQTELKTYDQQLKDIVKE RKSLDEILSKLNIVKEQKQQGSNQQAFINNQKNPSSIKAPKQFGTSYRDVPTIAYKGAKTFSPLDNYVIEKKFGPYFDPV YKFKIFNAAIMLNPKSPNAPVKNVLDGRIVYAKEAPGLKKVVIIEHNNAIHTIYAYMDKIESSIKTGIPIKKGTIIGKVN ERLSFEITQKDKHINPADFIKLN
Sequences:
>Translated_423_residues MYLSSRWFLSLLNKKTCESNMRGFGWIAICAIINICMANIDQDIAKNKDKLATAKSQEKAISKKLDVLGKAINAKNSELT QLGNQINALEKDIEQNQGKSLSQEKSLKDSQKKQNVLVEQKLQIEKQLIKLIAQGIAFNMVISRSADIDSVDGVVQYHIY QILHKNARNSIKTLNAKHNLLNNEIKQISNAISQIQSSIKTQTNKKERLQIAKEQQKATLAKMQTELKTYDQQLKDIVKE RKSLDEILSKLNIVKEQKQQGSNQQAFINNQKNPSSIKAPKQFGTSYRDVPTIAYKGAKTFSPLDNYVIEKKFGPYFDPV YKFKIFNAAIMLNPKSPNAPVKNVLDGRIVYAKEAPGLKKVVIIEHNNAIHTIYAYMDKIESSIKTGIPIKKGTIIGKVN ERLSFEITQKDKHINPADFIKLN >Mature_423_residues MYLSSRWFLSLLNKKTCESNMRGFGWIAICAIINICMANIDQDIAKNKDKLATAKSQEKAISKKLDVLGKAINAKNSELT QLGNQINALEKDIEQNQGKSLSQEKSLKDSQKKQNVLVEQKLQIEKQLIKLIAQGIAFNMVISRSADIDSVDGVVQYHIY QILHKNARNSIKTLNAKHNLLNNEIKQISNAISQIQSSIKTQTNKKERLQIAKEQQKATLAKMQTELKTYDQQLKDIVKE RKSLDEILSKLNIVKEQKQQGSNQQAFINNQKNPSSIKAPKQFGTSYRDVPTIAYKGAKTFSPLDNYVIEKKFGPYFDPV YKFKIFNAAIMLNPKSPNAPVKNVLDGRIVYAKEAPGLKKVVIIEHNNAIHTIYAYMDKIESSIKTGIPIKKGTIIGKVN ERLSFEITQKDKHINPADFIKLN
Specific function: Unknown
COG id: COG0739
COG function: function code M; Membrane proteins related to metalloendopeptidases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47829; Mature: 47829
Theoretical pI: Translated: 10.38; Mature: 10.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYLSSRWFLSLLNKKTCESNMRGFGWIAICAIINICMANIDQDIAKNKDKLATAKSQEKA CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH ISKKLDVLGKAINAKNSELTQLGNQINALEKDIEQNQGKSLSQEKSLKDSQKKQNVLVEQ HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH KLQIEKQLIKLIAQGIAFNMVISRSADIDSVDGVVQYHIYQILHKNARNSIKTLNAKHNL HHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LNNEIKQISNAISQIQSSIKTQTNKKERLQIAKEQQKATLAKMQTELKTYDQQLKDIVKE HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RKSLDEILSKLNIVKEQKQQGSNQQAFINNQKNPSSIKAPKQFGTSYRDVPTIAYKGAKT HHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCHHEECCCCC FSPLDNYVIEKKFGPYFDPVYKFKIFNAAIMLNPKSPNAPVKNVLDGRIVYAKEAPGLKK CCHHHHHHHHHCCCCCCCHHHHEEEEEEEEEECCCCCCCCHHHCCCCCEEEEECCCCCEE VVIIEHNNAIHTIYAYMDKIESSIKTGIPIKKGTIIGKVNERLSFEITQKDKHINPADFI EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEECCCCCCCHHHCE KLN ECC >Mature Secondary Structure MYLSSRWFLSLLNKKTCESNMRGFGWIAICAIINICMANIDQDIAKNKDKLATAKSQEKA CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH ISKKLDVLGKAINAKNSELTQLGNQINALEKDIEQNQGKSLSQEKSLKDSQKKQNVLVEQ HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH KLQIEKQLIKLIAQGIAFNMVISRSADIDSVDGVVQYHIYQILHKNARNSIKTLNAKHNL HHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LNNEIKQISNAISQIQSSIKTQTNKKERLQIAKEQQKATLAKMQTELKTYDQQLKDIVKE HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RKSLDEILSKLNIVKEQKQQGSNQQAFINNQKNPSSIKAPKQFGTSYRDVPTIAYKGAKT HHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCHHEECCCCC FSPLDNYVIEKKFGPYFDPVYKFKIFNAAIMLNPKSPNAPVKNVLDGRIVYAKEAPGLKK CCHHHHHHHHHCCCCCCCHHHHEEEEEEEEEECCCCCCCCHHHCCCCCEEEEECCCCCEE VVIIEHNNAIHTIYAYMDKIESSIKTGIPIKKGTIIGKVNERLSFEITQKDKHINPADFI EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEECCCCCCCHHHCE KLN ECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA