| Definition | Helicobacter hepaticus ATCC 51449 chromosome, complete genome. |
|---|---|
| Accession | NC_004917 |
| Length | 1,799,146 |
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The map label for this gene is 32266270
Identifier: 32266270
GI number: 32266270
Start: 745735
End: 747402
Strand: Direct
Name: 32266270
Synonym: HH0771
Alternate gene names: NA
Gene position: 745735-747402 (Clockwise)
Preceding gene: 32266269
Following gene: 32266271
Centisome position: 41.45
GC content: 39.57
Gene sequence:
>1668_bases ATGAAACAAATAAGTGTTAAATTCACCTTTAATGTCAAAGATGGCTCACTGCAAAAAATCAAAAAAGAGCTAGATTCTAT AAACAAAAATAGCGCAAATGAGCTTTATGCCCTAGAGCTTAAACTCCACGAGCAAAAAATGGAGCATATACAAGAGTATT CAAAAGCCTATAAAGACCTCCAAAGCGATATACAATCTGCCCTTAATGAGGATATACAGGGCATATTTAATGGCAATGTT CATTATTTTCGAAGTTTAATCAATGAACTTTTTTCATCTCTGCAAAGTGTTATTACCAAAGGTTTTGCGACTTCTATCTC TGCTGCGTTTATGGAATCCTCTGTTATAGAATCTATGAATAAATCCCTCGCCTCCGCCATTGATGGTTCTTTGTTTAGTA ATCTTTTTGATAAAAATCGTATTGCCAATGTGCAAAAAGAAGATTGGCATCTAAGCGAAGTAGTAGGCGCAGCTTTTGCA GGATTTGGGATAGGTAATGTCGCTGGAGGCTTAGTTGGCAATTTTTTAGGTGATGAAGTCAATGCACAAAAAACGCAAAA GAGTGCAAATAATGGTGCAATGGCAGGAGCTGCTGCTGGGGCAGCCATTGGGAGTTTTGTGCCTGTGATTGGCACGAGCT TAGGCGGACTTGTTGGAGGGCTTGTTGGAGGGCTTGGCGGAACGTTATTTGGGAGCTTTAACTCAACAAAGCTCACAACC ACCGCGCAAGGTGTGGAGCTTATCTCAAAGGCTACAAAAGACAATGTGAGTGCGCGTGAATTTGCCGATAAAGAAGAGGT CAAAAAGAAATGGTGGGGTTTGCAAAGCAACACAAGCACTTGGAAAGAATACTATGACGCTTCAAATTTTGCCCTAAAAG GAATCCAACAAAGCATAAGGGGCTATGAATATTTACTGCAAGATATTGGCAGTGGTGTCAAAAGCTTAAGCATCGCTAAA GGGAATTACAAAAGCTATGCAGATATTTTAAATGCTGGAGCAAAAGAGCTGATAAAGAGCTTTTATGAAGCTCCACATAA TGCTTTAAAAGAGCATCTTATCACGCCAAACATCAATGAGATTTATAATATGTGGGCGGACTATGCTAAAAGTGTGGATA AGCAGGTAAGCGAGGCATTAAGTGAAAGCCTTACTGCATTTGTATCCACAGGGCAAAATTTTCAAGTATGGCTTTATCAA TTTAAAGACCAAAGTATAGAGGGCTTAAAATATCAAGAAGAGCTTGCACGTAAGCAAGTAGATAGAATCTTAGAAAACTT AGGGGCGAGTGATGTGAATATTGATAATTATCTCAGCTATCGCGAGGAAGCATTGAAAGAGAGTTTTGACCCGCAAACCA TTGAGCGCATTAACGCTTTGGGTGAGGCATTAATGCAAAGTGGCTCTGCGAGTAAAAAATATGAGCAGGCTCTTAAAGAT GAGAGCAAAACCAAACTCAATCTCATTGACCCATTTTTACAAAAAGTAAAGAAGCTAGAAGATTATAAACTAGAGCAAGA AAGCAGCTCTGAAAAGCTCCAAGTCAATATGCTCACCACGCTTAAATCACTCTTGCGTGTGAATCAAGAAAGCCTAGAAG TAAGTCAAGCGGAAGCGACCTCGCCTAACCCCTCTCCCTTATTAAAGAGAGATTCAATAAATAGTTAG
Upstream 100 bases:
>100_bases TTAATTATGCCATTTTAAAGGATTTTTGCATTTATTATGGATTTGATAGTTTGGAGCTGTTGGGATTATATAAAGAAATG ATTGTGGAGATGGAAGCGAT
Downstream 100 bases:
>100_bases AAATAAAGGTGCAATATGAAAATTTTAACTCGTGGTGATATAACTCTTATAGAATCTAATCTCATTGAGAGCAGCACAAG ATTCAATCTAGGCGAGGCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 555; Mature: 555
Protein sequence:
>555_residues MKQISVKFTFNVKDGSLQKIKKELDSINKNSANELYALELKLHEQKMEHIQEYSKAYKDLQSDIQSALNEDIQGIFNGNV HYFRSLINELFSSLQSVITKGFATSISAAFMESSVIESMNKSLASAIDGSLFSNLFDKNRIANVQKEDWHLSEVVGAAFA GFGIGNVAGGLVGNFLGDEVNAQKTQKSANNGAMAGAAAGAAIGSFVPVIGTSLGGLVGGLVGGLGGTLFGSFNSTKLTT TAQGVELISKATKDNVSAREFADKEEVKKKWWGLQSNTSTWKEYYDASNFALKGIQQSIRGYEYLLQDIGSGVKSLSIAK GNYKSYADILNAGAKELIKSFYEAPHNALKEHLITPNINEIYNMWADYAKSVDKQVSEALSESLTAFVSTGQNFQVWLYQ FKDQSIEGLKYQEELARKQVDRILENLGASDVNIDNYLSYREEALKESFDPQTIERINALGEALMQSGSASKKYEQALKD ESKTKLNLIDPFLQKVKKLEDYKLEQESSSEKLQVNMLTTLKSLLRVNQESLEVSQAEATSPNPSPLLKRDSINS
Sequences:
>Translated_555_residues MKQISVKFTFNVKDGSLQKIKKELDSINKNSANELYALELKLHEQKMEHIQEYSKAYKDLQSDIQSALNEDIQGIFNGNV HYFRSLINELFSSLQSVITKGFATSISAAFMESSVIESMNKSLASAIDGSLFSNLFDKNRIANVQKEDWHLSEVVGAAFA GFGIGNVAGGLVGNFLGDEVNAQKTQKSANNGAMAGAAAGAAIGSFVPVIGTSLGGLVGGLVGGLGGTLFGSFNSTKLTT TAQGVELISKATKDNVSAREFADKEEVKKKWWGLQSNTSTWKEYYDASNFALKGIQQSIRGYEYLLQDIGSGVKSLSIAK GNYKSYADILNAGAKELIKSFYEAPHNALKEHLITPNINEIYNMWADYAKSVDKQVSEALSESLTAFVSTGQNFQVWLYQ FKDQSIEGLKYQEELARKQVDRILENLGASDVNIDNYLSYREEALKESFDPQTIERINALGEALMQSGSASKKYEQALKD ESKTKLNLIDPFLQKVKKLEDYKLEQESSSEKLQVNMLTTLKSLLRVNQESLEVSQAEATSPNPSPLLKRDSINS >Mature_555_residues MKQISVKFTFNVKDGSLQKIKKELDSINKNSANELYALELKLHEQKMEHIQEYSKAYKDLQSDIQSALNEDIQGIFNGNV HYFRSLINELFSSLQSVITKGFATSISAAFMESSVIESMNKSLASAIDGSLFSNLFDKNRIANVQKEDWHLSEVVGAAFA GFGIGNVAGGLVGNFLGDEVNAQKTQKSANNGAMAGAAAGAAIGSFVPVIGTSLGGLVGGLVGGLGGTLFGSFNSTKLTT TAQGVELISKATKDNVSAREFADKEEVKKKWWGLQSNTSTWKEYYDASNFALKGIQQSIRGYEYLLQDIGSGVKSLSIAK GNYKSYADILNAGAKELIKSFYEAPHNALKEHLITPNINEIYNMWADYAKSVDKQVSEALSESLTAFVSTGQNFQVWLYQ FKDQSIEGLKYQEELARKQVDRILENLGASDVNIDNYLSYREEALKESFDPQTIERINALGEALMQSGSASKKYEQALKD ESKTKLNLIDPFLQKVKKLEDYKLEQESSSEKLQVNMLTTLKSLLRVNQESLEVSQAEATSPNPSPLLKRDSINS
Specific function: Unknown
COG id: COG3941
COG function: function code R; Mu-like prophage protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61078; Mature: 61078
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQISVKFTFNVKDGSLQKIKKELDSINKNSANELYALELKLHEQKMEHIQEYSKAYKDL CCEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHH QSDIQSALNEDIQGIFNGNVHYFRSLINELFSSLQSVITKGFATSISAAFMESSVIESMN HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KSLASAIDGSLFSNLFDKNRIANVQKEDWHLSEVVGAAFAGFGIGNVAGGLVGNFLGDEV HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC NAQKTQKSANNGAMAGAAAGAAIGSFVPVIGTSLGGLVGGLVGGLGGTLFGSFNSTKLTT HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEH TAQGVELISKATKDNVSAREFADKEEVKKKWWGLQSNTSTWKEYYDASNFALKGIQQSIR HHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHH GYEYLLQDIGSGVKSLSIAKGNYKSYADILNAGAKELIKSFYEAPHNALKEHLITPNINE HHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHH IYNMWADYAKSVDKQVSEALSESLTAFVSTGQNFQVWLYQFKDQSIEGLKYQEELARKQV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHH DRILENLGASDVNIDNYLSYREEALKESFDPQTIERINALGEALMQSGSASKKYEQALKD HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC ESKTKLNLIDPFLQKVKKLEDYKLEQESSSEKLQVNMLTTLKSLLRVNQESLEVSQAEAT CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCC SPNPSPLLKRDSINS CCCCCCCCCCCCCCC >Mature Secondary Structure MKQISVKFTFNVKDGSLQKIKKELDSINKNSANELYALELKLHEQKMEHIQEYSKAYKDL CCEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHH QSDIQSALNEDIQGIFNGNVHYFRSLINELFSSLQSVITKGFATSISAAFMESSVIESMN HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KSLASAIDGSLFSNLFDKNRIANVQKEDWHLSEVVGAAFAGFGIGNVAGGLVGNFLGDEV HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC NAQKTQKSANNGAMAGAAAGAAIGSFVPVIGTSLGGLVGGLVGGLGGTLFGSFNSTKLTT HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEH TAQGVELISKATKDNVSAREFADKEEVKKKWWGLQSNTSTWKEYYDASNFALKGIQQSIR HHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHH GYEYLLQDIGSGVKSLSIAKGNYKSYADILNAGAKELIKSFYEAPHNALKEHLITPNINE HHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHH IYNMWADYAKSVDKQVSEALSESLTAFVSTGQNFQVWLYQFKDQSIEGLKYQEELARKQV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHH DRILENLGASDVNIDNYLSYREEALKESFDPQTIERINALGEALMQSGSASKKYEQALKD HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC ESKTKLNLIDPFLQKVKKLEDYKLEQESSSEKLQVNMLTTLKSLLRVNQESLEVSQAEAT CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCC SPNPSPLLKRDSINS CCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA