| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
Click here to switch to the map view.
The map label for this gene is yheT
Identifier: 30065361
GI number: 30065361
Start: 4319270
End: 4320292
Strand: Reverse
Name: yheT
Synonym: S4391
Alternate gene names: 30065361
Gene position: 4320292-4319270 (Counterclockwise)
Preceding gene: 30065362
Following gene: 30065360
Centisome position: 93.93
GC content: 53.57
Gene sequence:
>1023_bases ATGGCGCAGATAACGACGACCGATGCCAATGAATTTAGCAGCAGTGCTGAATTCACCCCTATGCGCGGCTTTAGCAATTG TCATCTACAAACCATGCTGCCGCGTTTGTTTCGTCGTCAGGTGAAATTCACCCCGTACTGGCAGCGGCTGGAGTTGCCCG ACGGCGATTTTGTCGATCTCGCGTGGAGTGAAGACCCCGCACAGGCGAAACATAAACCGCGTTTAGTGGTGTTTCACGGG CTGGAAGGCAGTCTCAATAGCCCTTACCCCCACGGTCTGGTTGAGGCGGCGCAAAAGCGCGGCTGGCTGGGCGTGGTGAT GCATTTTCGCGGATGCAGCGGTGAACCAAACCGTATGCACCGCATTTACCATTCGGGCGAAACCGAAGACGCCAGTTGGT TTTTACGCTGGCTGCAACGCGAATTTGGTCATGCGCCAACGGCTGCCGTCGGCTATTCGCTCGGCGGTAATATGCTGGCC TGTTTGCTGGCAAAGGAAGGCAATGATCTCCCGGTTGATGCGGCGGTGATTGTCTCTGCGCCGTTTATGCTGGAAGCCTG TAGCTATCATATGGAAAAGGGCTTTTCCCGCGTTTATCAGCGTTACTTGCTGAACCTGTTAAAAGCCAATGCCGCGCGCA AGCTGGCAGCCTACCCCGGAACGCTGCCGATTAATCTCGCGCAGTTAAAATCGGTACGTCGCATCCGTGAATTTGACGAT CTAATCACCGCCAGAATTCACGGCTACGCCGACGCTATCGACTATTATCGTCAGTGTAGCGCCATGCCAATGCTGAACCG GATCGCCAAACCGACGCTGATTATTCACGCCAAAGACGATCCGTTTATGGATCATCAGGTGATCCCAAAACCGGAAAGTC TCCCCTCGCAGGTGGAGTATCAACTGACTGAACATGGCGGTCATGTTGGCTTTATTGGCGGTACATTACTTCATCCGCAA ATGTGGCTGGAGTCACGCATTCCTGACTGGTTAACAACGTATCTGGAGGCGAAATCATGTTGA
Upstream 100 bases:
>100_bases AGCAAGCCAGCGCCAAATCCGGCCTGGAAGAGTGCGAAATGGCGTGGCTGGAAGCCCAGGAGCAGCTTGAGCAGATGCTG CTGGAAGGCCAAAGCAACTG
Downstream 100 bases:
>100_bases TTCCGTGGCAAGACCTCTCCCCCGAAACGCTGGAAAATTTAATTGAAAGCTTTGTGTTACGTGAAGGCACCGATTATGGT GAACATGAGCGTACACTTGA
Product: putative hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 340; Mature: 339
Protein sequence:
>340_residues MAQITTTDANEFSSSAEFTPMRGFSNCHLQTMLPRLFRRQVKFTPYWQRLELPDGDFVDLAWSEDPAQAKHKPRLVVFHG LEGSLNSPYPHGLVEAAQKRGWLGVVMHFRGCSGEPNRMHRIYHSGETEDASWFLRWLQREFGHAPTAAVGYSLGGNMLA CLLAKEGNDLPVDAAVIVSAPFMLEACSYHMEKGFSRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRIREFDD LITARIHGYADAIDYYRQCSAMPMLNRIAKPTLIIHAKDDPFMDHQVIPKPESLPSQVEYQLTEHGGHVGFIGGTLLHPQ MWLESRIPDWLTTYLEAKSC
Sequences:
>Translated_340_residues MAQITTTDANEFSSSAEFTPMRGFSNCHLQTMLPRLFRRQVKFTPYWQRLELPDGDFVDLAWSEDPAQAKHKPRLVVFHG LEGSLNSPYPHGLVEAAQKRGWLGVVMHFRGCSGEPNRMHRIYHSGETEDASWFLRWLQREFGHAPTAAVGYSLGGNMLA CLLAKEGNDLPVDAAVIVSAPFMLEACSYHMEKGFSRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRIREFDD LITARIHGYADAIDYYRQCSAMPMLNRIAKPTLIIHAKDDPFMDHQVIPKPESLPSQVEYQLTEHGGHVGFIGGTLLHPQ MWLESRIPDWLTTYLEAKSC >Mature_339_residues AQITTTDANEFSSSAEFTPMRGFSNCHLQTMLPRLFRRQVKFTPYWQRLELPDGDFVDLAWSEDPAQAKHKPRLVVFHGL EGSLNSPYPHGLVEAAQKRGWLGVVMHFRGCSGEPNRMHRIYHSGETEDASWFLRWLQREFGHAPTAAVGYSLGGNMLAC LLAKEGNDLPVDAAVIVSAPFMLEACSYHMEKGFSRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRIREFDDL ITARIHGYADAIDYYRQCSAMPMLNRIAKPTLIIHAKDDPFMDHQVIPKPESLPSQVEYQLTEHGGHVGFIGGTLLHPQM WLESRIPDWLTTYLEAKSC
Specific function: Unknown
COG id: COG0429
COG function: function code R; Predicted hydrolase of the alpha/beta-hydrolase fold
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AB hydrolase superfamily. AB hydrolase 4 family [H]
Homologues:
Organism=Homo sapiens, GI194578891, Length=321, Percent_Identity=28.3489096573209, Blast_Score=113, Evalue=2e-25, Organism=Homo sapiens, GI23397663, Length=274, Percent_Identity=27.3722627737226, Blast_Score=113, Evalue=3e-25, Organism=Homo sapiens, GI23397659, Length=326, Percent_Identity=25.4601226993865, Blast_Score=92, Evalue=8e-19, Organism=Homo sapiens, GI23397661, Length=326, Percent_Identity=25.4601226993865, Blast_Score=92, Evalue=8e-19, Organism=Homo sapiens, GI269315865, Length=314, Percent_Identity=26.4331210191083, Blast_Score=66, Evalue=5e-11, Organism=Escherichia coli, GI1789752, Length=340, Percent_Identity=98.5294117647059, Blast_Score=704, Evalue=0.0, Organism=Caenorhabditis elegans, GI17566110, Length=306, Percent_Identity=26.1437908496732, Blast_Score=105, Evalue=4e-23, Organism=Caenorhabditis elegans, GI71985405, Length=305, Percent_Identity=23.9344262295082, Blast_Score=98, Evalue=5e-21, Organism=Saccharomyces cerevisiae, GI6325162, Length=290, Percent_Identity=30.6896551724138, Blast_Score=109, Evalue=7e-25, Organism=Saccharomyces cerevisiae, GI6323866, Length=246, Percent_Identity=30.0813008130081, Blast_Score=105, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6319655, Length=287, Percent_Identity=27.5261324041812, Blast_Score=103, Evalue=3e-23, Organism=Drosophila melanogaster, GI24652003, Length=295, Percent_Identity=30.5084745762712, Blast_Score=112, Evalue=4e-25, Organism=Drosophila melanogaster, GI281398151, Length=295, Percent_Identity=30.5084745762712, Blast_Score=111, Evalue=6e-25, Organism=Drosophila melanogaster, GI24581365, Length=322, Percent_Identity=22.9813664596273, Blast_Score=83, Evalue=3e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012020 - InterPro: IPR000073 - InterPro: IPR000952 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: NA
Molecular weight: Translated: 38501; Mature: 38369
Theoretical pI: Translated: 7.68; Mature: 7.68
Prosite motif: PS01133 UPF0017
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQITTTDANEFSSSAEFTPMRGFSNCHLQTMLPRLFRRQVKFTPYWQRLELPDGDFVDL CCEEECCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHEEECCCCCEEEE AWSEDPAQAKHKPRLVVFHGLEGSLNSPYPHGLVEAAQKRGWLGVVMHFRGCSGEPNRMH EECCCHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCHHHH RIYHSGETEDASWFLRWLQREFGHAPTAAVGYSLGGNMLACLLAKEGNDLPVDAAVIVSA HHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHCC PFMLEACSYHMEKGFSRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRIREFDD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH LITARIHGYADAIDYYRQCSAMPMLNRIAKPTLIIHAKDDPFMDHQVIPKPESLPSQVEY HHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHH QLTEHGGHVGFIGGTLLHPQMWLESRIPDWLTTYLEAKSC HHHHCCCEEEEECCHHHCHHHHHHHCCHHHHHHHHHHCCC >Mature Secondary Structure AQITTTDANEFSSSAEFTPMRGFSNCHLQTMLPRLFRRQVKFTPYWQRLELPDGDFVDL CEEECCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHEEECCCCCEEEE AWSEDPAQAKHKPRLVVFHGLEGSLNSPYPHGLVEAAQKRGWLGVVMHFRGCSGEPNRMH EECCCHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCHHHH RIYHSGETEDASWFLRWLQREFGHAPTAAVGYSLGGNMLACLLAKEGNDLPVDAAVIVSA HHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHCC PFMLEACSYHMEKGFSRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRIREFDD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH LITARIHGYADAIDYYRQCSAMPMLNRIAKPTLIIHAKDDPFMDHQVIPKPESLPSQVEY HHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHH QLTEHGGHVGFIGGTLLHPQMWLESRIPDWLTTYLEAKSC HHHHCCCEEEEECCHHHCHHHHHHHCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]