| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
Click here to switch to the map view.
The map label for this gene is yhjG
Identifier: 30065194
GI number: 30065194
Start: 4124982
End: 4127042
Strand: Direct
Name: yhjG
Synonym: S4211
Alternate gene names: 30065194
Gene position: 4124982-4127042 (Clockwise)
Preceding gene: 30065193
Following gene: 30065198
Centisome position: 89.69
GC content: 52.98
Gene sequence:
>2061_bases ATGAGCAAGGCAGGCAAAATAACCGCTGCGATTTCAGGGGCTTTCTTGTTGTTGATTGTCGTGGCGATCATTTTGATTGC AACTTTTGACTGGAATCGACTCAAACCGACCATCAACCAGAAAGTCTCTGCGGAGTTGAATCGTCCGTTCGCTATCCGTG GCAATCTGGGCGTGGTGTGGGAGCGGCAAAAACAAGAAACTGGCTGGCGCAGCTGGGTGCCGTGGCCTCATGTACATGCA GAAGACATCATTCTTGGTAATCCACCGGATATTCCCGAAGTCACGATGGTGCATTTGCCGCGAGTAGAGGCAACGCTGGC ACCGCTGGCGCTGCTGACCAAAACGGTCTGGCTGCCGTGGATCAAGCTCGAAAAGCCCGACGCGCGCCTGATTCGCCTCT CTGAAAAGAACAATAACTGGACGTTTAATCTTGCCAACGATGACAACAAAGACGCGAATGCAAAGCCGTCGGCATGGTCG TTTCGGCTGGATAATATTCTTTTCGATCAAGGGCGGATCGCCATTGATGACAAAGTAAGCAAAGCGGATCTGGAAATTTT TGTTGATCCGTTAGGCAAGCCGCTGCCATTCAGCGAAGTTACTGGATCGAAAGGTAAAGCGGATAAAGAAAAGGTGGGCG ATTACATTTTTGGCCTGAAGGCGCAGGGACGTTATAACGGTGAACCGCTCACGGGTACGGGAAAAATAGGCGGTATGCTG GCGCTGCGTGGCGAAGGGACGCCGTTTCCGGTACAGGCTGATTTCCGTTCAGGTAATACCCGTGTTGCTTTTGATGGCGT CGTGAATGACCCAATGAAGATGGGCGGTGTCGATTTACGGCTTAAATTTTCTGGCGATTCACTGGGTGATCTCTATGAAC TGACGGGCGTTCTGCTGCCCGATACCCCGCCGTTTGAAACGGATGGTCGGCTGGTAGCGAAAATCGACACTGAAAAATCG TCGGTCTTTGATTATCGCGGTTTTAATGGGCGAATTGGCGATAGCGATATCCACGGTTCTCTGGTCTACACCACCGGAAA GCCACGACCAAAACTGGAAGGTGATGTCGAGTCGCGGCAATTGCGGCTGGCGGACCTGGGACCGTTGATTGGCGTTGATT CCGGGAAAGGGGCAGAAAAGTCGAAACGGTCTGAACAGAAGAAGGGCGAAAAAAGCGTTCAGCCTGCGGGCAAAGTGCTG CCTTACGACCGCTTCGAAACCGATAAATGGGACGTTATGGATGCCGATGTTCGCTTCAAAGGGCGGCGCATTGAGCATGG CAGTAGCCTGCCGATTAGCGATCTTTCTACTCATATCATCCTCAAAAATGCTGACCTGCGCCTGCAACCGCTGAAATTTG GCATGGCGGGCGGCAGCATTGCGGCGAATATTCATCTGGAAGGCGATAAAAAGCCGATGCAGGGGCGGGCAGATATTCAG GCTCGTCGACTGAAACTGAAAGAACTGATGCCCGATGTGGAACTGATGCAGAAGACGCTGGGGGAAATGAACGGTGACGC GGAACTACGCGGTAGCGGTAACTCGGTGGCGGCGCTTTTAGGCAACAGTAACGGCAACCTGAAACTGTTGATGAATGACG GGCTGGTGAGCCGCAACCTGATGGAGATTGTTGGGCTGAATGTCGGCAACTACATTGTCGGTGCGATATTTGGTGACGAT GAGGTGCGGGTGAACTGCGCGGCGGCGAATCTGAATATTGCCAACGGCGTGGCGCGCCCGCAGATTTTTGCTTTCGATAC TGAGAACGCGTTGATTAATGTTACCGGCACGGCAAGTTTTGCTTCGGAACAGCTGGATTTGACTATTGATCCGGAGAGTA AAGGGATTCGGATTATCACACTGCGTTCGCCGCTGTATGTGCGTGGGACGTTTAAAAATCCGCAGGCTGGGGTGAAAGCC GGACCGCTGATTGCCCGTGGTGCTGTTGCTGCGGCACTGGCAACGCTGGTAACACCGGCGGCGGCGTTACTGGCACTGAT CTCACCTTCCGAAGGGGAGGCTAATCAGTGTCGGACGATATTGTCGCAGATGAAGAAGTGA
Upstream 100 bases:
>100_bases AACGCTGAATACGGCGGTTCTGGCGCTATAAGCTGCCTCATTTTCCGCCGGGCTGGACTATCTTTAGGACTGGCACAGGA AGAATATGAGGAAGCGAACG
Downstream 100 bases:
>100_bases TGATAATTGCCGGATGTCTGACATCCGGCAATTAAACAGATTTAGATTTTTGGCAAAGTGTGCTTTGTTCATGCCGGATG CGGCGTGAACGCCTTATCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 686; Mature: 685
Protein sequence:
>686_residues MSKAGKITAAISGAFLLLIVVAIILIATFDWNRLKPTINQKVSAELNRPFAIRGNLGVVWERQKQETGWRSWVPWPHVHA EDIILGNPPDIPEVTMVHLPRVEATLAPLALLTKTVWLPWIKLEKPDARLIRLSEKNNNWTFNLANDDNKDANAKPSAWS FRLDNILFDQGRIAIDDKVSKADLEIFVDPLGKPLPFSEVTGSKGKADKEKVGDYIFGLKAQGRYNGEPLTGTGKIGGML ALRGEGTPFPVQADFRSGNTRVAFDGVVNDPMKMGGVDLRLKFSGDSLGDLYELTGVLLPDTPPFETDGRLVAKIDTEKS SVFDYRGFNGRIGDSDIHGSLVYTTGKPRPKLEGDVESRQLRLADLGPLIGVDSGKGAEKSKRSEQKKGEKSVQPAGKVL PYDRFETDKWDVMDADVRFKGRRIEHGSSLPISDLSTHIILKNADLRLQPLKFGMAGGSIAANIHLEGDKKPMQGRADIQ ARRLKLKELMPDVELMQKTLGEMNGDAELRGSGNSVAALLGNSNGNLKLLMNDGLVSRNLMEIVGLNVGNYIVGAIFGDD EVRVNCAAANLNIANGVARPQIFAFDTENALINVTGTASFASEQLDLTIDPESKGIRIITLRSPLYVRGTFKNPQAGVKA GPLIARGAVAAALATLVTPAAALLALISPSEGEANQCRTILSQMKK
Sequences:
>Translated_686_residues MSKAGKITAAISGAFLLLIVVAIILIATFDWNRLKPTINQKVSAELNRPFAIRGNLGVVWERQKQETGWRSWVPWPHVHA EDIILGNPPDIPEVTMVHLPRVEATLAPLALLTKTVWLPWIKLEKPDARLIRLSEKNNNWTFNLANDDNKDANAKPSAWS FRLDNILFDQGRIAIDDKVSKADLEIFVDPLGKPLPFSEVTGSKGKADKEKVGDYIFGLKAQGRYNGEPLTGTGKIGGML ALRGEGTPFPVQADFRSGNTRVAFDGVVNDPMKMGGVDLRLKFSGDSLGDLYELTGVLLPDTPPFETDGRLVAKIDTEKS SVFDYRGFNGRIGDSDIHGSLVYTTGKPRPKLEGDVESRQLRLADLGPLIGVDSGKGAEKSKRSEQKKGEKSVQPAGKVL PYDRFETDKWDVMDADVRFKGRRIEHGSSLPISDLSTHIILKNADLRLQPLKFGMAGGSIAANIHLEGDKKPMQGRADIQ ARRLKLKELMPDVELMQKTLGEMNGDAELRGSGNSVAALLGNSNGNLKLLMNDGLVSRNLMEIVGLNVGNYIVGAIFGDD EVRVNCAAANLNIANGVARPQIFAFDTENALINVTGTASFASEQLDLTIDPESKGIRIITLRSPLYVRGTFKNPQAGVKA GPLIARGAVAAALATLVTPAAALLALISPSEGEANQCRTILSQMKK >Mature_685_residues SKAGKITAAISGAFLLLIVVAIILIATFDWNRLKPTINQKVSAELNRPFAIRGNLGVVWERQKQETGWRSWVPWPHVHAE DIILGNPPDIPEVTMVHLPRVEATLAPLALLTKTVWLPWIKLEKPDARLIRLSEKNNNWTFNLANDDNKDANAKPSAWSF RLDNILFDQGRIAIDDKVSKADLEIFVDPLGKPLPFSEVTGSKGKADKEKVGDYIFGLKAQGRYNGEPLTGTGKIGGMLA LRGEGTPFPVQADFRSGNTRVAFDGVVNDPMKMGGVDLRLKFSGDSLGDLYELTGVLLPDTPPFETDGRLVAKIDTEKSS VFDYRGFNGRIGDSDIHGSLVYTTGKPRPKLEGDVESRQLRLADLGPLIGVDSGKGAEKSKRSEQKKGEKSVQPAGKVLP YDRFETDKWDVMDADVRFKGRRIEHGSSLPISDLSTHIILKNADLRLQPLKFGMAGGSIAANIHLEGDKKPMQGRADIQA RRLKLKELMPDVELMQKTLGEMNGDAELRGSGNSVAALLGNSNGNLKLLMNDGLVSRNLMEIVGLNVGNYIVGAIFGDDE VRVNCAAANLNIANGVARPQIFAFDTENALINVTGTASFASEQLDLTIDPESKGIRIITLRSPLYVRGTFKNPQAGVKAG PLIARGAVAAALATLVTPAAALLALISPSEGEANQCRTILSQMKK
Specific function: Unknown
COG id: COG2982
COG function: function code M; Uncharacterized protein involved in outer membrane biogenesis
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI226510981, Length=686, Percent_Identity=99.7084548104956, Blast_Score=1383, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007844 [H]
Pfam domain/function: PF05170 AsmA [H]
EC number: NA
Molecular weight: Translated: 74471; Mature: 74340
Theoretical pI: Translated: 9.28; Mature: 9.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKAGKITAAISGAFLLLIVVAIILIATFDWNRLKPTINQKVSAELNRPFAIRGNLGVVW CCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCHHHHHCCCCEEEECCEEEEE ERQKQETGWRSWVPWPHVHAEDIILGNPPDIPEVTMVHLPRVEATLAPLALLTKTVWLPW ECCHHCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCE IKLEKPDARLIRLSEKNNNWTFNLANDDNKDANAKPSAWSFRLDNILFDQGRIAIDDKVS EEECCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCEEEEEECCEEECCCCEEECCCCC KADLEIFVDPLGKPLPFSEVTGSKGKADKEKVGDYIFGLKAQGRYNGEPLTGTGKIGGML CCCEEEEEECCCCCCCHHHCCCCCCCCCHHHHCCEEEEEEECCCCCCCCCCCCCCCCCEE ALRGEGTPFPVQADFRSGNTRVAFDGVVNDPMKMGGVDLRLKFSGDSLGDLYELTGVLLP EECCCCCCCCEEECCCCCCEEEEECCCCCCCHHHCCEEEEEEECCCCCCCHHHHCEEECC DTPPFETDGRLVAKIDTEKSSVFDYRGFNGRIGDSDIHGSLVYTTGKPRPKLEGDVESRQ CCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCE LRLADLGPLIGVDSGKGAEKSKRSEQKKGEKSVQPAGKVLPYDRFETDKWDVMDADVRFK EEEECCCCEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEC GRRIEHGSSLPISDLSTHIILKNADLRLQPLKFGMAGGSIAANIHLEGDKKPMQGRADIQ CEEECCCCCCCHHHCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCHH ARRLKLKELMPDVELMQKTLGEMNGDAELRGSGNSVAALLGNSNGNLKLLMNDGLVSRNL HHHHHHHHHCCCHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCCEEEEECCCCCHHHH MEIVGLNVGNYIVGAIFGDDEVRVNCAAANLNIANGVARPQIFAFDTENALINVTGTASF HHHHCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEEECCCC ASEQLDLTIDPESKGIRIITLRSPLYVRGTFKNPQAGVKAGPLIARGAVAAALATLVTPA CCCCEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH AALLALISPSEGEANQCRTILSQMKK HHHHEEECCCCCCHHHHHHHHHHHCC >Mature Secondary Structure SKAGKITAAISGAFLLLIVVAIILIATFDWNRLKPTINQKVSAELNRPFAIRGNLGVVW CCCCEEEEHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCHHHHHCCCCEEEECCEEEEE ERQKQETGWRSWVPWPHVHAEDIILGNPPDIPEVTMVHLPRVEATLAPLALLTKTVWLPW ECCHHCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCE IKLEKPDARLIRLSEKNNNWTFNLANDDNKDANAKPSAWSFRLDNILFDQGRIAIDDKVS EEECCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCEEEEEECCEEECCCCEEECCCCC KADLEIFVDPLGKPLPFSEVTGSKGKADKEKVGDYIFGLKAQGRYNGEPLTGTGKIGGML CCCEEEEEECCCCCCCHHHCCCCCCCCCHHHHCCEEEEEEECCCCCCCCCCCCCCCCCEE ALRGEGTPFPVQADFRSGNTRVAFDGVVNDPMKMGGVDLRLKFSGDSLGDLYELTGVLLP EECCCCCCCCEEECCCCCCEEEEECCCCCCCHHHCCEEEEEEECCCCCCCHHHHCEEECC DTPPFETDGRLVAKIDTEKSSVFDYRGFNGRIGDSDIHGSLVYTTGKPRPKLEGDVESRQ CCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCE LRLADLGPLIGVDSGKGAEKSKRSEQKKGEKSVQPAGKVLPYDRFETDKWDVMDADVRFK EEEECCCCEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEC GRRIEHGSSLPISDLSTHIILKNADLRLQPLKFGMAGGSIAANIHLEGDKKPMQGRADIQ CEEECCCCCCCHHHCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCHH ARRLKLKELMPDVELMQKTLGEMNGDAELRGSGNSVAALLGNSNGNLKLLMNDGLVSRNL HHHHHHHHHCCCHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCCEEEEECCCCCHHHH MEIVGLNVGNYIVGAIFGDDEVRVNCAAANLNIANGVARPQIFAFDTENALINVTGTASF HHHHCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEEECCCC ASEQLDLTIDPESKGIRIITLRSPLYVRGTFKNPQAGVKAGPLIARGAVAAALATLVTPA CCCCEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH AALLALISPSEGEANQCRTILSQMKK HHHHEEECCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]