| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
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The map label for this gene is yfgD [H]
Identifier: 30063869
GI number: 30063869
Start: 2583901
End: 2584260
Strand: Direct
Name: yfgD [H]
Synonym: S2688
Alternate gene names: 30063869
Gene position: 2583901-2584260 (Clockwise)
Preceding gene: 30063868
Following gene: 30063873
Centisome position: 56.18
GC content: 52.22
Gene sequence:
>360_bases ATGACCAAACAGGTAAAAATCTACCATAACCCACGCTGTTCAAAGAGCCGGGAAACGCTGAACCTGCTGAAAGAAAACGG CGTGGAGCCAGAAGTGGTGCTCTACCTTGAGACACCCGCCGATGCGGCAACGCTGCGCGATTTGCTGAAAATGCTGGGGA TGAATAGCGCCCGTGAATTGATGCGCCAGAAAGAGGATCTTTATAAAGAACTAAACCTGGCTGACAGTTCGCTTAGCGAA GAGGCGCTGATTCAGGCAATGGTGGATAATCCGAAGCTGATGGAGCGCCCGATTATGGTCGCGAATGGCAAAGCGCGGAT TGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAA
Upstream 100 bases:
>100_bases TGCAACAAGCGCGTTACGATGCGCGCATCGACCAGTTGCGCCAGCTGCAGGAACGCTTTAAGCCTTATACCAAGATGTAA TTCGCATTAAAGGAAGAACA
Downstream 100 bases:
>100_bases GATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGAT TAACTTCGCGTAGGTCAGGC
Product: putative oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 119; Mature: 118
Protein sequence:
>119_residues MTKQVKIYHNPRCSKSRETLNLLKENGVEPEVVLYLETPADAATLRDLLKMLGMNSARELMRQKEDLYKELNLADSSLSE EALIQAMVDNPKLMERPIMVANGKARIGRPPEQVLEIVG
Sequences:
>Translated_119_residues MTKQVKIYHNPRCSKSRETLNLLKENGVEPEVVLYLETPADAATLRDLLKMLGMNSARELMRQKEDLYKELNLADSSLSE EALIQAMVDNPKLMERPIMVANGKARIGRPPEQVLEIVG >Mature_118_residues TKQVKIYHNPRCSKSRETLNLLKENGVEPEVVLYLETPADAATLRDLLKMLGMNSARELMRQKEDLYKELNLADSSLSEE ALIQAMVDNPKLMERPIMVANGKARIGRPPEQVLEIVG
Specific function: Unknown
COG id: COG1393
COG function: function code P; Arsenate reductase and related proteins, glutaredoxin family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ArsC family [H]
Homologues:
Organism=Escherichia coli, GI1788841, Length=119, Percent_Identity=98.3193277310924, Blast_Score=237, Evalue=2e-64, Organism=Escherichia coli, GI1789918, Length=115, Percent_Identity=40.8695652173913, Blast_Score=93, Evalue=6e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006659 - InterPro: IPR006660 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF03960 ArsC [H]
EC number: NA
Molecular weight: Translated: 13449; Mature: 13318
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 5.9 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 5.1 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKQVKIYHNPRCSKSRETLNLLKENGVEPEVVLYLETPADAATLRDLLKMLGMNSAREL CCCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCHHHHH MRQKEDLYKELNLADSSLSEEALIQAMVDNPKLMERPIMVANGKARIGRPPEQVLEIVG HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHCCEEEECCCCCCCCCHHHHHHHCC >Mature Secondary Structure TKQVKIYHNPRCSKSRETLNLLKENGVEPEVVLYLETPADAATLRDLLKMLGMNSAREL CCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCHHHHH MRQKEDLYKELNLADSSLSEEALIQAMVDNPKLMERPIMVANGKARIGRPPEQVLEIVG HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHCCEEEECCCCCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503; 10493123 [H]