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The map label for this gene is ypdC [H]

Identifier: 30063787

GI number: 30063787

Start: 2482109

End: 2482681

Strand: Direct

Name: ypdC [H]

Synonym: S2586

Alternate gene names: 30063787

Gene position: 2482109-2482681 (Clockwise)

Preceding gene: 30063786

Following gene: 30063793

Centisome position: 53.97

GC content: 54.45

Gene sequence:

>573_bases
ATGAAAGCACCAGGCTTGCCCGCCGATCAACAATTTTTCGCCGATCTGTTCAGCGGCCTAGTGCTTAACCCGCAACTACT
GGGGCGCGTCTGGTTTGCCAGCCAGCCTGCCTCGTTACCGGTGGGCAGTTTATGTATTGATTTTCCCCGTCTGGATATCG
TGCTGCGCGGCGAATACGGCAACCTGCTGGAAGCAAAGCAGCAGCGAATGGTGGAAGGAGAAATGCTGTTTATTCCGGCA
CGCGCGGCTAATTTACCGATCAACAACAAACCGGTGATGCTGTTAAGCCTGGTGTTCGCACCGACCTGGCTTGGGTTATC
GTTTTACGATAGCCGCACCACGTCGTTGTTGCATCCTGCTCGCCAGACCCAGCTTCCCAGCCTGCAACGCGGTGAAGGTG
AAGCGATGCTTACCGCCCTCACCCATCTTAGCCGTTCGCCGCTGGAGCAGAATATCATTCAGCCACTGGTGTTAAGTTTG
CTGCATCTTTGCCGCAACGTGGTGAATATGCCGCCGGGTAATTCACAACCGCGCGGCGATTTTCTCTATCACAGCATTTG
TAACTGGGTTTAG

Upstream 100 bases:

>100_bases
CTACATTCTGCGACTGAAAGATCTGGATTTTGAAGTGCCGGTCAGCCGCAGCAAAGTGAAAGAATTTCGCCAGTTAATGC
ATCTTTAATCGGGAACTTTC

Downstream 100 bases:

>100_bases
GATAATTATGCCCAGCCGCTCACCCGCGAGAGCGTGGCGCAGTTTTTTAATATCACGCCCAATCATCTGTCAAAACTGTT
TGCTCAGCATGGAACGATGC

Product: putative ARAC-type regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MKAPGLPADQQFFADLFSGLVLNPQLLGRVWFASQPASLPVGSLCIDFPRLDIVLRGEYGNLLEAKQQRMVEGEMLFIPA
RAANLPINNKPVMLLSLVFAPTWLGLSFYDSRTTSLLHPARQTQLPSLQRGEGEAMLTALTHLSRSPLEQNIIQPLVLSL
LHLCRNVVNMPPGNSQPRGDFLYHSICNWV

Sequences:

>Translated_190_residues
MKAPGLPADQQFFADLFSGLVLNPQLLGRVWFASQPASLPVGSLCIDFPRLDIVLRGEYGNLLEAKQQRMVEGEMLFIPA
RAANLPINNKPVMLLSLVFAPTWLGLSFYDSRTTSLLHPARQTQLPSLQRGEGEAMLTALTHLSRSPLEQNIIQPLVLSL
LHLCRNVVNMPPGNSQPRGDFLYHSICNWV
>Mature_190_residues
MKAPGLPADQQFFADLFSGLVLNPQLLGRVWFASQPASLPVGSLCIDFPRLDIVLRGEYGNLLEAKQQRMVEGEMLFIPA
RAANLPINNKPVMLLSLVFAPTWLGLSFYDSRTTSLLHPARQTQLPSLQRGEGEAMLTALTHLSRSPLEQNIIQPLVLSL
LHLCRNVVNMPPGNSQPRGDFLYHSICNWV

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788725, Length=190, Percent_Identity=97.8947368421053, Blast_Score=381, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 21114; Mature: 21114

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAPGLPADQQFFADLFSGLVLNPQLLGRVWFASQPASLPVGSLCIDFPRLDIVLRGEYG
CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHCCCCCEEEEEECCCC
NLLEAKQQRMVEGEMLFIPARAANLPINNKPVMLLSLVFAPTWLGLSFYDSRTTSLLHPA
CHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHCCHHHHHHCCH
RQTQLPSLQRGEGEAMLTALTHLSRSPLEQNIIQPLVLSLLHLCRNVVNMPPGNSQPRGD
HHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
FLYHSICNWV
HHHHHHHHCC
>Mature Secondary Structure
MKAPGLPADQQFFADLFSGLVLNPQLLGRVWFASQPASLPVGSLCIDFPRLDIVLRGEYG
CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHCCCCCEEEEEECCCC
NLLEAKQQRMVEGEMLFIPARAANLPINNKPVMLLSLVFAPTWLGLSFYDSRTTSLLHPA
CHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHCCHHHHHHCCH
RQTQLPSLQRGEGEAMLTALTHLSRSPLEQNIIQPLVLSLLHLCRNVVNMPPGNSQPRGD
HHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
FLYHSICNWV
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]