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The map label for this gene is cscR [H]

Identifier: 30063772

GI number: 30063772

Start: 2458942

End: 2460000

Strand: Reverse

Name: cscR [H]

Synonym: S2568

Alternate gene names: 30063772

Gene position: 2460000-2458942 (Counterclockwise)

Preceding gene: 30063774

Following gene: 30063770

Centisome position: 53.49

GC content: 51.65

Gene sequence:

>1059_bases
TTGGATCTCGCCAGTGACGTCTGTTTCTGCTACAGTGCCCGTTTTACGGCAAACGGCTTGGGTATGGCTTCATTAAAGGA
TGTCGCACGCCTGGCGGGAGTGTCGATGATGACAGTCTCCCGGGTGATGCATAATGCAGAATCTGTGCGTCCTGCAACGC
GTGACCGCGTATTGCAGGCAATCCAGACCCTGAATTATGTTCCTGATCTTTCCGCCCGTAAGATGCGCGCTCAAGGACGT
AAGCCGTCGACTCTCGCCGTGCTGGCGCAGGACACGGCTACCACTCCTTTCTCTGTTGATATTCTGCTTGCCATTGAGCA
AACCGCCAGCGAGTTCGGCTGGAATAGTTTTTTAATCAATATTTTTTCTGAAGATGACGCTGCCCGCGCGGCACGTCAGC
TGCTTGCCCACCGTCCGGATGGCATTATCTATACTACAATGGGGCTGCGACATATCACGCTGCCTGAGTCTCTGTATGGT
GAAAATATTGTATTGGCGAACTGTGTGGCGGATGACCCAGCGTTACCCAGTTATATCCCTGATGATTACACTGCACAATA
TGAATCAACACAGCATTTGCTCGCGGCGGGCTATCGTCAACCATTATGCTTCTGGCTACCGGAAAGTGCGTTGGCAACAG
GGTATCGTCGGCAGGGATTTGAGCAGGCTTGGCGTGATGCTGGACGAGATCTGGCTGAGGTGAAACAATTTCACATGGCA
ACAGGTGATGATCACTACACCGATCTCGCAAGTTTACTCAATGCTCACTTCAAATCGGGCAAACCAGATTTTGATGTTCT
GATATGTGGTAACGATCGCGCAGCCTTTGTGGCTTATCAGGTTCTTTTGGCGAAGGGGGTACGTATCCCGCAGGATGTCG
CTGTAATGGGCTTTGATAATCTGGTTGGCGTCGGGCATCTGTTTTTACCGCCGCTGACCACAATTCAGCTTCCACATGAC
ATTATCGGGCGGGAAGCTGCATTGCATATTATTGAAGGTCGTGAAGGGGGAAGAGTGACGCGGATCCCTTGCCCGCTGTT
GATCCGTTGTTCCACCTGA

Upstream 100 bases:

>100_bases
TATATGGTTACTCGTTGGCGAGAACAGAGGCGGAATTGGGGACAATTGTCCGGGAATTATTGTTATTTTTTATTGTATTG
CTGTGTCAGGTGATAGGGCG

Downstream 100 bases:

>100_bases
TATTATGTTAACCCAGTAGCCAGAGTGCTCCATGTTGCAGCACAGCCACTCCGTGGGAGGCATAAAGCGACAGTTCCCGT
TCTTCTGGCTGCGGATAGAT

Product: sucrose specific repressor

Products: NA

Alternate protein names: Csc operon regulatory protein [H]

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MDLASDVCFCYSARFTANGLGMASLKDVARLAGVSMMTVSRVMHNAESVRPATRDRVLQAIQTLNYVPDLSARKMRAQGR
KPSTLAVLAQDTATTPFSVDILLAIEQTASEFGWNSFLINIFSEDDAARAARQLLAHRPDGIIYTTMGLRHITLPESLYG
ENIVLANCVADDPALPSYIPDDYTAQYESTQHLLAAGYRQPLCFWLPESALATGYRRQGFEQAWRDAGRDLAEVKQFHMA
TGDDHYTDLASLLNAHFKSGKPDFDVLICGNDRAAFVAYQVLLAKGVRIPQDVAVMGFDNLVGVGHLFLPPLTTIQLPHD
IIGREAALHIIEGREGGRVTRIPCPLLIRCST

Sequences:

>Translated_352_residues
MDLASDVCFCYSARFTANGLGMASLKDVARLAGVSMMTVSRVMHNAESVRPATRDRVLQAIQTLNYVPDLSARKMRAQGR
KPSTLAVLAQDTATTPFSVDILLAIEQTASEFGWNSFLINIFSEDDAARAARQLLAHRPDGIIYTTMGLRHITLPESLYG
ENIVLANCVADDPALPSYIPDDYTAQYESTQHLLAAGYRQPLCFWLPESALATGYRRQGFEQAWRDAGRDLAEVKQFHMA
TGDDHYTDLASLLNAHFKSGKPDFDVLICGNDRAAFVAYQVLLAKGVRIPQDVAVMGFDNLVGVGHLFLPPLTTIQLPHD
IIGREAALHIIEGREGGRVTRIPCPLLIRCST
>Mature_352_residues
MDLASDVCFCYSARFTANGLGMASLKDVARLAGVSMMTVSRVMHNAESVRPATRDRVLQAIQTLNYVPDLSARKMRAQGR
KPSTLAVLAQDTATTPFSVDILLAIEQTASEFGWNSFLINIFSEDDAARAARQLLAHRPDGIIYTTMGLRHITLPESLYG
ENIVLANCVADDPALPSYIPDDYTAQYESTQHLLAAGYRQPLCFWLPESALATGYRRQGFEQAWRDAGRDLAEVKQFHMA
TGDDHYTDLASLLNAHFKSGKPDFDVLICGNDRAAFVAYQVLLAKGVRIPQDVAVMGFDNLVGVGHLFLPPLTTIQLPHD
IIGREAALHIIEGREGGRVTRIPCPLLIRCST

Specific function: Repressor for the csc operon. Binds D-fructose as an inducer [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=338, Percent_Identity=29.585798816568, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1790194, Length=331, Percent_Identity=28.0966767371601, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1787948, Length=321, Percent_Identity=26.791277258567, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1789202, Length=309, Percent_Identity=28.4789644012945, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1790715, Length=317, Percent_Identity=26.1829652996845, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1786540, Length=346, Percent_Identity=26.0115606936416, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789068, Length=316, Percent_Identity=27.5316455696203, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787580, Length=316, Percent_Identity=23.7341772151899, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI48994940, Length=323, Percent_Identity=25.6965944272446, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1790689, Length=329, Percent_Identity=27.355623100304, Blast_Score=72, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 38695; Mature: 38695

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLASDVCFCYSARFTANGLGMASLKDVARLAGVSMMTVSRVMHNAESVRPATRDRVLQA
CCCCHHHHHHEECCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHH
IQTLNYVPDLSARKMRAQGRKPSTLAVLAQDTATTPFSVDILLAIEQTASEFGWNSFLIN
HHHHHCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEEEEHHHHHHCCCCEEEEE
IFSEDDAARAARQLLAHRPDGIIYTTMGLRHITLPESLYGENIVLANCVADDPALPSYIP
EECCCHHHHHHHHHHHHCCCCEEEEECCEEEEECCHHHCCCCEEEEEECCCCCCCCCCCC
DDYTAQYESTQHLLAAGYRQPLCFWLPESALATGYRRQGFEQAWRDAGRDLAEVKQFHMA
CCCCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
TGDDHYTDLASLLNAHFKSGKPDFDVLICGNDRAAFVAYQVLLAKGVRIPQDVAVMGFDN
CCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCHHEEECCHH
LVGVGHLFLPPLTTIQLPHDIIGREAALHIIEGREGGRVTRIPCPLLIRCST
HHHCCHHHCCCCCEEECCHHHHCCHHEEEEEECCCCCEEEEECCCEEEEECC
>Mature Secondary Structure
MDLASDVCFCYSARFTANGLGMASLKDVARLAGVSMMTVSRVMHNAESVRPATRDRVLQA
CCCCHHHHHHEECCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHH
IQTLNYVPDLSARKMRAQGRKPSTLAVLAQDTATTPFSVDILLAIEQTASEFGWNSFLIN
HHHHHCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEEEEHHHHHHCCCCEEEEE
IFSEDDAARAARQLLAHRPDGIIYTTMGLRHITLPESLYGENIVLANCVADDPALPSYIP
EECCCHHHHHHHHHHHHCCCCEEEEECCEEEEECCHHHCCCCEEEEEECCCCCCCCCCCC
DDYTAQYESTQHLLAAGYRQPLCFWLPESALATGYRRQGFEQAWRDAGRDLAEVKQFHMA
CCCCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
TGDDHYTDLASLLNAHFKSGKPDFDVLICGNDRAAFVAYQVLLAKGVRIPQDVAVMGFDN
CCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCHHEEECCHH
LVGVGHLFLPPLTTIQLPHDIIGREAALHIIEGREGGRVTRIPCPLLIRCST
HHHCCHHHCCCCCEEECCHHHHCCHHEEEEEECCCCCEEEEECCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA