| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
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The map label for this gene is yfbV [H]
Identifier: 30063721
GI number: 30063721
Start: 2400246
End: 2400701
Strand: Reverse
Name: yfbV [H]
Synonym: S2506
Alternate gene names: 30063721
Gene position: 2400701-2400246 (Counterclockwise)
Preceding gene: 30063725
Following gene: 30063720
Centisome position: 52.2
GC content: 50.0
Gene sequence:
>456_bases ATGTCAACGCCGGATAATCGTTCTGTTAATTTTTTTAGCTTGTTTCGCCGCGGACAGCATTACTCAAAGACGTGGCCACT GGAAAAACGCCTTGCTCCGGTCTTTGTCGAAAATCGCGTTATCAAGATGACGCGTTATGCGATCCGTTTTATGCCGCCGA TCGCCGTATTTACTCTCTGCTGGCAGATTGCCCTGGGCGGTCTGCTTGGGCCGGCAGTTGCCACTGCACTGTTCGCCTTA AGTTTACCCATGCAGGGATTGTGGTGGCTGGGCAAGCGTTCTGTAACGCCATTACCCCCTGCAATCCTTAACTGGTTTTA TGAAGTTCGCGGTAAATTGCAGGAGTCTGGACAGGTGTTGGCACCCGTTGAAGGCAAGCCTGATTACCAGGCATTAGCTG ACACGCTTAAGCGCGCCTTCAAACAACTGGATAAAACTTTCCTTGATGATTTGTAA
Upstream 100 bases:
>100_bases TGATAGTGGGTATGGAAGACAAAATGTTTTGAACGTTGTCCCGCTGAGTTGTGAATTTGCACAAATTTTTGAATCTTTAT ATGTGAAGTTGAGGTGAAGC
Downstream 100 bases:
>100_bases TTGACCCCTGATTACGCATATAAAAGAAGGCATACTCAGCCTTCTTTTTTTTCACCGTAGTAGAGTGATACAGGAGTCAA CAATGGAAATGACCAACGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 151; Mature: 150
Protein sequence:
>151_residues MSTPDNRSVNFFSLFRRGQHYSKTWPLEKRLAPVFVENRVIKMTRYAIRFMPPIAVFTLCWQIALGGLLGPAVATALFAL SLPMQGLWWLGKRSVTPLPPAILNWFYEVRGKLQESGQVLAPVEGKPDYQALADTLKRAFKQLDKTFLDDL
Sequences:
>Translated_151_residues MSTPDNRSVNFFSLFRRGQHYSKTWPLEKRLAPVFVENRVIKMTRYAIRFMPPIAVFTLCWQIALGGLLGPAVATALFAL SLPMQGLWWLGKRSVTPLPPAILNWFYEVRGKLQESGQVLAPVEGKPDYQALADTLKRAFKQLDKTFLDDL >Mature_150_residues STPDNRSVNFFSLFRRGQHYSKTWPLEKRLAPVFVENRVIKMTRYAIRFMPPIAVFTLCWQIALGGLLGPAVATALFALS LPMQGLWWLGKRSVTPLPPAILNWFYEVRGKLQESGQVLAPVEGKPDYQALADTLKRAFKQLDKTFLDDL
Specific function: Unknown
COG id: COG3092
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0208 family [H]
Homologues:
Organism=Escherichia coli, GI1788632, Length=151, Percent_Identity=99.3377483443709, Blast_Score=307, Evalue=2e-85,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007334 [H]
Pfam domain/function: PF04217 DUF412 [H]
EC number: NA
Molecular weight: Translated: 17198; Mature: 17067
Theoretical pI: Translated: 10.51; Mature: 10.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTPDNRSVNFFSLFRRGQHYSKTWPLEKRLAPVFVENRVIKMTRYAIRFMPPIAVFTLC CCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHH WQIALGGLLGPAVATALFALSLPMQGLWWLGKRSVTPLPPAILNWFYEVRGKLQESGQVL HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEE APVEGKPDYQALADTLKRAFKQLDKTFLDDL ECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure STPDNRSVNFFSLFRRGQHYSKTWPLEKRLAPVFVENRVIKMTRYAIRFMPPIAVFTLC CCCCCCCHHHHHHHHCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHH WQIALGGLLGPAVATALFALSLPMQGLWWLGKRSVTPLPPAILNWFYEVRGKLQESGQVL HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEE APVEGKPDYQALADTLKRAFKQLDKTFLDDL ECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA