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The map label for this gene is yncB

Identifier: 30063238

GI number: 30063238

Start: 1842145

End: 1843275

Strand: Reverse

Name: yncB

Synonym: S1898

Alternate gene names: 30063238

Gene position: 1843275-1842145 (Counterclockwise)

Preceding gene: 161486478

Following gene: 30063237

Centisome position: 40.08

GC content: 52.52

Gene sequence:

>1131_bases
GTGTTGCAGAGGGGATGTGACGGCTGCAAACAAAACCAATCCCGTGAGCCTGCTACTATTGATGGATTCATGCCAAAAGC
ACAGGAGAGCATTATGGGGCAACAAAAGCAGCGTAATCGACGTTGGGTTCTGGCCTCGCGTCCACATGGCGCACCGGTTC
CGGAGAATTTCCGTCTTGAAGAAGATGATGTCGCCACACCGGGTGAAGGACAGGTGTTACTGCGCACAGTTTATTTGTCC
CTGGACCCGTATATGCGTGGACGTATGAGCGATGAGCCATCTTATTCACCGCCGGTTGATATTGGCGGCGTGATGGTCGG
CGGTACGGTGAGCCGTGTCGTGGAGTCGAATCATCCTGATTATCAGCCTGGCGACTGGGTGCTGGGCTACAGTGGATGGC
AGGACTATGACATATCCAGTGGTGATGACCTGGTGAAACTTGGCGATCATCCGCAAAATCCATCGTGGTCGCTGGGTGTG
CTGGGGATGCCAGGCTTTACCGCTTATATGGGGCTGCTGGATATCGGTCAGCCTAAAGAGGGCGAAACGTTGGTGGTAGC
TGCGGCGACAGAACCAGTGGGGGCGACGGTGGGGCAAATCGGCAAACTTAAAGGTTGCAGAGTGGTGGGGGTAGCCGGTG
GCGCGGAAAAATGCCGCCATGCTACCGAGGTGTTAGGCTTCGATGTTTGCCTTGATCACCACGCGGACGATTTTGCCGAA
CAACTGGCGAAAGCGTGCCCAAAAGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTTGATGCAGTGCTACC
ATTACTTAATACATCTGCGCGCATTCCCGTTTGTGGCTTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGG
ATCGTTTACCCCTGTTGATGGCAACGGTGCTGAAAAAACGTATTCGCTTGCAAGGGTTTATTATCGCTCAGGATTATGGT
CACCGCATCCATGAGTTTCAGAAGGAGATGGGGCAATGGGTGAAAGAGGATAAAATCCACTACCGCGAAGATATTACTGA
TGGTTTAGAGAATGCGCCACAGACGTTTATCGGCCTGCTGAAGGGTAAAAACTTCGGCAAAGTGGTGATCCGCGTCGCGG
GTGATGATTAA

Upstream 100 bases:

>100_bases
ACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAACGGA
TTCCTCGATGAAATTATTGC

Downstream 100 bases:

>100_bases
AGTTTCAACGGCGGCGTAAGCCGCCATAAAAATCCAGGCAAAAAGCTTATTTTCAGCTTTAATTAACTAACCACGTCATT
GTTCTGCTGCTAATAACAAC

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MLQRGCDGCKQNQSREPATIDGFMPKAQESIMGQQKQRNRRWVLASRPHGAPVPENFRLEEDDVATPGEGQVLLRTVYLS
LDPYMRGRMSDEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQPGDWVLGYSGWQDYDISSGDDLVKLGDHPQNPSWSLGV
LGMPGFTAYMGLLDIGQPKEGETLVVAAATEPVGATVGQIGKLKGCRVVGVAGGAEKCRHATEVLGFDVCLDHHADDFAE
QLAKACPKGIDIYYENVGGKVFDAVLPLLNTSARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKRIRLQGFIIAQDYG
HRIHEFQKEMGQWVKEDKIHYREDITDGLENAPQTFIGLLKGKNFGKVVIRVAGDD

Sequences:

>Translated_376_residues
MLQRGCDGCKQNQSREPATIDGFMPKAQESIMGQQKQRNRRWVLASRPHGAPVPENFRLEEDDVATPGEGQVLLRTVYLS
LDPYMRGRMSDEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQPGDWVLGYSGWQDYDISSGDDLVKLGDHPQNPSWSLGV
LGMPGFTAYMGLLDIGQPKEGETLVVAAATEPVGATVGQIGKLKGCRVVGVAGGAEKCRHATEVLGFDVCLDHHADDFAE
QLAKACPKGIDIYYENVGGKVFDAVLPLLNTSARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKRIRLQGFIIAQDYG
HRIHEFQKEMGQWVKEDKIHYREDITDGLENAPQTFIGLLKGKNFGKVVIRVAGDD
>Mature_376_residues
MLQRGCDGCKQNQSREPATIDGFMPKAQESIMGQQKQRNRRWVLASRPHGAPVPENFRLEEDDVATPGEGQVLLRTVYLS
LDPYMRGRMSDEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQPGDWVLGYSGWQDYDISSGDDLVKLGDHPQNPSWSLGV
LGMPGFTAYMGLLDIGQPKEGETLVVAAATEPVGATVGQIGKLKGCRVVGVAGGAEKCRHATEVLGFDVCLDHHADDFAE
QLAKACPKGIDIYYENVGGKVFDAVLPLLNTSARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKRIRLQGFIIAQDYG
HRIHEFQKEMGQWVKEDKIHYREDITDGLENAPQTFIGLLKGKNFGKVVIRVAGDD

Specific function: Unknown

COG id: COG2130

COG function: function code R; Putative NADP-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADP-dependent oxidoreductase L4BD family [H]

Homologues:

Organism=Homo sapiens, GI226246682, Length=349, Percent_Identity=38.10888252149, Blast_Score=221, Evalue=9e-58,
Organism=Homo sapiens, GI226246680, Length=349, Percent_Identity=38.10888252149, Blast_Score=221, Evalue=9e-58,
Organism=Homo sapiens, GI22748929, Length=349, Percent_Identity=38.10888252149, Blast_Score=221, Evalue=9e-58,
Organism=Homo sapiens, GI226059159, Length=338, Percent_Identity=37.8698224852071, Blast_Score=221, Evalue=1e-57,
Organism=Homo sapiens, GI226059133, Length=338, Percent_Identity=37.8698224852071, Blast_Score=221, Evalue=1e-57,
Organism=Homo sapiens, GI226056130, Length=311, Percent_Identity=36.6559485530547, Blast_Score=184, Evalue=1e-46,
Organism=Homo sapiens, GI28557745, Length=341, Percent_Identity=28.1524926686217, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI194239674, Length=239, Percent_Identity=28.4518828451883, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI13236495, Length=239, Percent_Identity=28.4518828451883, Blast_Score=74, Evalue=3e-13,
Organism=Escherichia coli, GI226510941, Length=345, Percent_Identity=98.8405797101449, Blast_Score=701, Evalue=0.0,
Organism=Caenorhabditis elegans, GI133901710, Length=360, Percent_Identity=32.5, Blast_Score=169, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI133901712, Length=360, Percent_Identity=32.5, Blast_Score=169, Evalue=3e-42,
Organism=Saccharomyces cerevisiae, GI6323504, Length=371, Percent_Identity=26.6846361185984, Blast_Score=116, Evalue=5e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR002085
- InterPro:   IPR011032
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00107 ADH_zinc_N [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 41072; Mature: 41072

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQRGCDGCKQNQSREPATIDGFMPKAQESIMGQQKQRNRRWVLASRPHGAPVPENFRLE
CCCCCCCHHHCCCCCCCCEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
EDDVATPGEGQVLLRTVYLSLDPYMRGRMSDEPSYSPPVDIGGVMVGGTVSRVVESNHPD
CCCCCCCCCCCEEEEEEEHHCCHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHCCCCC
YQPGDWVLGYSGWQDYDISSGDDLVKLGDHPQNPSWSLGVLGMPGFTAYMGLLDIGQPKE
CCCCCEEEECCCCCCCCCCCCCCEEECCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCC
GETLVVAAATEPVGATVGQIGKLKGCRVVGVAGGAEKCRHATEVLGFDVCLDHHADDFAE
CCEEEEEECCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHH
QLAKACPKGIDIYYENVGGKVFDAVLPLLNTSARIPVCGLVSSYNATELPPGPDRLPLLM
HHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEHHCCCCCCCCCCCCCHHHHHH
ATVLKKRIRLQGFIIAQDYGHRIHEFQKEMGQWVKEDKIHYREDITDGLENAPQTFIGLL
HHHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
KGKNFGKVVIRVAGDD
CCCCCCEEEEEEECCC
>Mature Secondary Structure
MLQRGCDGCKQNQSREPATIDGFMPKAQESIMGQQKQRNRRWVLASRPHGAPVPENFRLE
CCCCCCCHHHCCCCCCCCEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
EDDVATPGEGQVLLRTVYLSLDPYMRGRMSDEPSYSPPVDIGGVMVGGTVSRVVESNHPD
CCCCCCCCCCCEEEEEEEHHCCHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHCCCCC
YQPGDWVLGYSGWQDYDISSGDDLVKLGDHPQNPSWSLGVLGMPGFTAYMGLLDIGQPKE
CCCCCEEEECCCCCCCCCCCCCCEEECCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCC
GETLVVAAATEPVGATVGQIGKLKGCRVVGVAGGAEKCRHATEVLGFDVCLDHHADDFAE
CCEEEEEECCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHH
QLAKACPKGIDIYYENVGGKVFDAVLPLLNTSARIPVCGLVSSYNATELPPGPDRLPLLM
HHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEHHCCCCCCCCCCCCCHHHHHH
ATVLKKRIRLQGFIIAQDYGHRIHEFQKEMGQWVKEDKIHYREDITDGLENAPQTFIGLL
HHHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
KGKNFGKVVIRVAGDD
CCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]