Click here to switch to the map view.

The map label for this gene is ydhQ [H]

Identifier: 30063180

GI number: 30063180

Start: 1764150

End: 1765406

Strand: Reverse

Name: ydhQ [H]

Synonym: S1824

Alternate gene names: 30063180

Gene position: 1765406-1764150 (Counterclockwise)

Preceding gene: 30063182

Following gene: 30063178

Centisome position: 38.38

GC content: 51.87

Gene sequence:

>1257_bases
ATGGGATCTGATGCGAAAAACTTGATGAGCGACGGGAATGTGCAAATTGTTAAGACCGGCGAGGTCCTTGGCGCGACGCA
ACTTACTGAAGGCGAGTTGATTGTTGAAGCTGGCGGAAGAGCCGAAAATACCGTGGTCACGGGGGCTGGCTGGTTGAAAG
TGGCAACCGGTGGGATCGCCAAATGCACACAGTACGGTAACAATGGCACGCTATCGGTCAGCGACGGTGCCATTGCCACA
GATATTGTTCAGTCCGAGGGAGGCGCAATTAGTCTCTCTACGCTCGCTACGGTTAATGGCCGCCATCCCGAAGGTGAATT
CAGCGTTGATCAGGGTTATGCCTGCGGTTTGTTGCTGGAAAATGGCGGTAACCTGCGTGTACTGGAAGGACATCGCGCGG
AAAAAATCATTCTCGATCAAGAGGGCGGCCTGTTGGTTAATGGGACAACCTCAGCGGTCGTGGTAGATGAAGGTGGTGAA
TTGTTGGTGTATCCAAGTGGAGAAGCCAGCAATTGTGAGATTAATCAGGGCGGCGTTTTTATGCTGGCCGGGAAAGCCAG
TGATACGTTGCTTGCTGGTGGCACCATGAATAATCTCGGTGGTGAAGACTCTGACACTATTGTTGAGAATGGATCCATTT
ATCGTCTGGGGACGGATGGCCTTCAGCTCTACAGTTCCGGTAAGACGCAAAACCTGTCGGTGAATGTGGGGGGGCGGGCT
GAAGTGCATGCCGGTACGCTGGAAAATGCGGTAATACAAGGTGGAACAGTGATCCTGTTGTCACCCACCAGCGCGGACGA
AAATTTTGTCGTAGAGGAAGATCGCGCACCGGTTGAACTGACCGGGAGTGTTGCATTACTGGACGGCGCTTCAATGATTA
TTGGTTATGGCGCAGAGCTGCAACAATCAACGATTACTGTACAGCAGGGCGGTGTGTTGATTCTCGACGGCAGTACGGTA
AAAGGTGACAGCGTCACTTTCATTGTTGGTAACATCAATCTGAATGGCGGAAAACTGTGGCTGATCACTGGTGCGGCAAC
GCATGTGCAACTGAAAGTGAAACGCCTGCGCGGAGAGGGAGCGATTTGCCTGCAAACCAGTGCGAAAGAAATTTCACCTG
ACTTCATCAATGTGAAAGGGGAAGTTAACGGGGATATACGCGTTGAGATAACAGATGCCAGTCGGCAAACTCTGTGTAAC
GCTCTGAAATTACAGCCAGACGAAGACGGGATTGGCGCAACGCTCCAGCCTGCGTAA

Upstream 100 bases:

>100_bases
AGTTGTTTGCCACCATCTCAAATCTGTCGTGGATAAATCCTCCGTAGCCTTTACACTTAGGTAGCAATAAAGGCACACAG
ATGCAGCAAAGGAATAAATC

Downstream 100 bases:

>100_bases
AAACACAGGCGCAACCCGTGAAGGTTGCGCCTTGTCTTTATTAGCGGGACGCTCGTTGCAGAATGATGGCTGACGGCATA
CGTTGCAGGAACCGCATACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 417

Protein sequence:

>418_residues
MGSDAKNLMSDGNVQIVKTGEVLGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIAT
DIVQSEGGAISLSTLATVNGRHPEGEFSVDQGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGE
LLVYPSGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRA
EVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGAELQQSTITVQQGGVLILDGSTV
KGDSVTFIVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVNGDIRVEITDASRQTLCN
ALKLQPDEDGIGATLQPA

Sequences:

>Translated_418_residues
MGSDAKNLMSDGNVQIVKTGEVLGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIAT
DIVQSEGGAISLSTLATVNGRHPEGEFSVDQGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGE
LLVYPSGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRA
EVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGAELQQSTITVQQGGVLILDGSTV
KGDSVTFIVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVNGDIRVEITDASRQTLCN
ALKLQPDEDGIGATLQPA
>Mature_417_residues
GSDAKNLMSDGNVQIVKTGEVLGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATD
IVQSEGGAISLSTLATVNGRHPEGEFSVDQGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGEL
LVYPSGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRAE
VHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGAELQQSTITVQQGGVLILDGSTVK
GDSVTFIVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVNGDIRVEITDASRQTLCNA
LKLQPDEDGIGATLQPA

Specific function: Unknown

COG id: COG3468

COG function: function code MU; Type V secretory pathway, adhesin AidA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787954, Length=418, Percent_Identity=98.5645933014354, Blast_Score=812, Evalue=0.0,
Organism=Escherichia coli, GI48994897, Length=411, Percent_Identity=31.6301703163017, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87082145, Length=374, Percent_Identity=27.807486631016, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012332
- InterPro:   IPR011050
- InterPro:   IPR004899 [H]

Pfam domain/function: PF03212 Pertactin [H]

EC number: NA

Molecular weight: Translated: 42881; Mature: 42749

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSDAKNLMSDGNVQIVKTGEVLGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIA
CCCCHHHHHCCCCEEEEEECCEECCEEECCCCEEEEECCCCCCEEEECCCEEEEECCCCE
KCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDQGYACGLLLE
EHEECCCCCEEEECCCCEEEEEEECCCCEEEEEEEEEECCCCCCCCEEECCCCEEEEEEE
NGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPSGEASNCEINQGGVF
CCCCEEEEECCCCEEEEEECCCCEEEECCCEEEEEECCCCEEEEECCCCCCEEECCCCEE
MLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRA
EEECCCCCEEEECCCCCCCCCCCCCEEEECCCEEEECCCCEEEEECCCCEEEEEEECCCE
EVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGAEL
EEECCCCCCEEECCCEEEEECCCCCCCCEEEECCCCCEEEECCEEEECCCEEEEEECCCC
QQSTITVQQGGVLILDGSTVKGDSVTFIVGNINLNGGKLWLITGAATHVQLKVKRLRGEG
CCEEEEEECCCEEEECCCCCCCCEEEEEEEEEEECCCEEEEEECCCEEEEEEEEEECCCC
AICLQTSAKEISPDFINVKGEVNGDIRVEITDASRQTLCNALKLQPDEDGIGATLQPA
EEEEECCCCCCCCCEEEEEEECCCEEEEEEECCCHHHHHHHHCCCCCCCCCCEEECCC
>Mature Secondary Structure 
GSDAKNLMSDGNVQIVKTGEVLGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIA
CCCHHHHHCCCCEEEEEECCEECCEEECCCCEEEEECCCCCCEEEECCCEEEEECCCCE
KCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDQGYACGLLLE
EHEECCCCCEEEECCCCEEEEEEECCCCEEEEEEEEEECCCCCCCCEEECCCCEEEEEEE
NGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPSGEASNCEINQGGVF
CCCCEEEEECCCCEEEEEECCCCEEEECCCEEEEEECCCCEEEEECCCCCCEEECCCCEE
MLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRA
EEECCCCCEEEECCCCCCCCCCCCCEEEECCCEEEECCCCEEEEECCCCEEEEEEECCCE
EVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGAEL
EEECCCCCCEEECCCEEEEECCCCCCCCEEEECCCCCEEEECCEEEECCCEEEEEECCCC
QQSTITVQQGGVLILDGSTVKGDSVTFIVGNINLNGGKLWLITGAATHVQLKVKRLRGEG
CCEEEEEECCCEEEECCCCCCCCEEEEEEEEEEECCCEEEEEECCCEEEEEEEEEECCCC
AICLQTSAKEISPDFINVKGEVNGDIRVEITDASRQTLCNALKLQPDEDGIGATLQPA
EEEEECCCCCCCCCEEEEEEECCCEEEEEEECCCHHHHHHHHCCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]