BacMap

Definition	Shigella flexneri 2a str. 2457T, complete genome.
Accession	NC_004741
Length	4,599,354

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The map label for this gene is ynjD [H]

Identifier: 30062980

GI number: 30062980

Start: 1543062

End: 1543715

Strand: Reverse

Name: ynjD [H]

Synonym: S1584

Alternate gene names: 30062980

Gene position: 1543715-1543062 (Counterclockwise)

Preceding gene: 30062982

Following gene: 30062978

Centisome position: 33.56

GC content: 51.68

Gene sequence:

>654_bases
ATGCTCTGCGTGAAAAATGTTTCGCTACGTTTACCAGAAAGCCGCTTGCTGACAAACGTTAACTTTACGGTTGATAAAGG
TGACATCGTCACGTTAATGGGGCCGTCTGGCTGTGGAAAATCCACTCTGTTTTCATGGATGATTGGTGCACTGGCCGGAC
AGTTTTCTTGTACAGGTGAGCTATGGCTCAATGAGCAACGGATTGACATGCTACCCACCGCACAGCGTCAGATTGGCATT
CTTTTTCAGGATGCACTGTTATTTGACCAGTTCAGCGTCGGGCAAAATTTACTGCTGGCGCTACCGGCGACACTTAAGGG
GAATGCCCGACGTAATGCCGTGAATGATGCACTTGAGCGTTCAGGCCTTGACGGAGCTTTCCATCAGGATCCTGCCACTT
TGTCTGGCGGTCAGCGAGCGCGCGTTGCTCTACTACGCGCCCTTCTCGCCCAGCCAAAAGCGTTACTCCTGGATGAGCCA
TTCAGCCGTCTTGATGTGGCTCTGCGCGATAATTTTCGCCAGTGGGTGTTCAGCGAAGTTCGCGCCCTGGCGATCCCCGT
CGTTCAGGTAACGCACGATCTCCAGGATGTTCCTGCTGATAGTTCTGTTCTGGATATGGCGCAGTGGTCAGAAAATTACA
ACAAACTGCGATAA

Upstream 100 bases:

>100_bases
CCGCCCAGGCGTTATGGCAACTGTTGTTACCGCTTATTATTTTTGCCCTGACCGCGTTAGTCGCAAAATGGGTAGGTTAT
GTCAGACAAGGAATCCGCTA

Downstream 100 bases:

>100_bases
CGCAAAGTTTTTCTCAATGCGTCAGTTCAGAATGGCGCACTCAAAACTACAATGTCGGGATTTTCGATGAAACGTGTTTC
TCAAATGACCGCGCTGGCAA

Product: putative ATP-binding component of a transport system

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGI
LFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEP
FSRLDVALRDNFRQWVFSEVRALAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR

Sequences:

>Translated_217_residues
MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGI
LFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEP
FSRLDVALRDNFRQWVFSEVRALAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR
>Mature_217_residues
MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGI
LFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEP
FSRLDVALRDNFRQWVFSEVRALAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR

Specific function: Probably part of a binding-protein-dependent transport system YnjCD. Probably responsible for energy coupling to the transport system [H]

COG id: COG4136

COG function: function code R; ABC-type uncharacterized transport system, ATPase component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI42490749, Length=169, Percent_Identity=33.1360946745562, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI27262624, Length=190, Percent_Identity=31.5789473684211, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI27262626, Length=190, Percent_Identity=31.5789473684211, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI46592915, Length=154, Percent_Identity=31.1688311688312, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI46592956, Length=154, Percent_Identity=31.1688311688312, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI46592978, Length=154, Percent_Identity=31.1688311688312, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI46592964, Length=154, Percent_Identity=31.1688311688312, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI27881501, Length=182, Percent_Identity=28.021978021978, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI46592971, Length=154, Percent_Identity=31.1688311688312, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI46592898, Length=154, Percent_Identity=31.1688311688312, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI30795238, Length=182, Percent_Identity=28.021978021978, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI116734710, Length=156, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI1788053, Length=217, Percent_Identity=98.6175115207373, Blast_Score=433, Evalue=1e-123,
Organism=Escherichia coli, GI1790467, Length=191, Percent_Identity=36.1256544502618, Blast_Score=118, Evalue=2e-28,
Organism=Escherichia coli, GI87081709, Length=196, Percent_Identity=35.2040816326531, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI1786253, Length=177, Percent_Identity=37.8531073446328, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI87082267, Length=184, Percent_Identity=33.695652173913, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI87081791, Length=197, Percent_Identity=34.010152284264, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1788761, Length=200, Percent_Identity=33, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1786563, Length=181, Percent_Identity=35.3591160220994, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1787712, Length=192, Percent_Identity=33.8541666666667, Blast_Score=100, Evalue=6e-23,
Organism=Escherichia coli, GI1787370, Length=184, Percent_Identity=32.6086956521739, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787029, Length=223, Percent_Identity=30.9417040358744, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786703, Length=197, Percent_Identity=34.010152284264, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1789593, Length=166, Percent_Identity=33.7349397590361, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1789873, Length=184, Percent_Identity=34.2391304347826, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1786872, Length=200, Percent_Identity=36.5, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI87081834, Length=201, Percent_Identity=32.3383084577114, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1786698, Length=210, Percent_Identity=31.9047619047619, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1789672, Length=171, Percent_Identity=35.0877192982456, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1790544, Length=182, Percent_Identity=32.967032967033, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1788225, Length=228, Percent_Identity=29.8245614035088, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1788450, Length=201, Percent_Identity=32.8358208955224, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1789032, Length=184, Percent_Identity=30.4347826086957, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788897, Length=208, Percent_Identity=29.8076923076923, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789962, Length=194, Percent_Identity=32.9896907216495, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786398, Length=185, Percent_Identity=34.5945945945946, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788506, Length=192, Percent_Identity=32.2916666666667, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI48994943, Length=207, Percent_Identity=28.5024154589372, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787089, Length=193, Percent_Identity=32.6424870466321, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI145693107, Length=216, Percent_Identity=31.0185185185185, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790162, Length=207, Percent_Identity=29.4685990338164, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1789586, Length=201, Percent_Identity=30.8457711442786, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1790739, Length=203, Percent_Identity=31.5270935960591, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1789891, Length=190, Percent_Identity=32.1052631578947, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1787164, Length=199, Percent_Identity=33.6683417085427, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1787112, Length=213, Percent_Identity=30.5164319248826, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI48994883, Length=191, Percent_Identity=29.8429319371728, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1789864, Length=216, Percent_Identity=26.8518518518519, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787105, Length=220, Percent_Identity=27.7272727272727, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788165, Length=205, Percent_Identity=30.7317073170732, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787500, Length=190, Percent_Identity=26.8421052631579, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1786319, Length=187, Percent_Identity=29.4117647058824, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI87081782, Length=176, Percent_Identity=31.8181818181818, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1787792, Length=202, Percent_Identity=26.2376237623762, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789963, Length=194, Percent_Identity=28.3505154639175, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI48995001, Length=209, Percent_Identity=30.622009569378, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI48994997, Length=206, Percent_Identity=29.6116504854369, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1788210, Length=215, Percent_Identity=28.3720930232558, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787758, Length=186, Percent_Identity=27.4193548387097, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1786653, Length=172, Percent_Identity=29.6511627906977, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1786345, Length=201, Percent_Identity=30.8457711442786, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1786803, Length=184, Percent_Identity=28.2608695652174, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1790525, Length=192, Percent_Identity=27.6041666666667, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1787143, Length=174, Percent_Identity=31.6091954022989, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1786981, Length=182, Percent_Identity=28.5714285714286, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1787759, Length=195, Percent_Identity=27.6923076923077, Blast_Score=60, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI71996809, Length=165, Percent_Identity=35.7575757575758, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI193211017, Length=165, Percent_Identity=35.7575757575758, Blast_Score=83, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI193211015, Length=165, Percent_Identity=35.7575757575758, Blast_Score=83, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17541710, Length=166, Percent_Identity=36.144578313253, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17567269, Length=173, Percent_Identity=33.5260115606936, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71984940, Length=161, Percent_Identity=34.1614906832298, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17567265, Length=174, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI115535101, Length=174, Percent_Identity=34.4827586206897, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI212646699, Length=180, Percent_Identity=32.2222222222222, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI25146777, Length=164, Percent_Identity=33.5365853658537, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=169, Percent_Identity=30.1775147928994, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193202349, Length=173, Percent_Identity=31.7919075144509, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI115533592, Length=163, Percent_Identity=32.5153374233129, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6324985, Length=220, Percent_Identity=26.8181818181818, Blast_Score=71, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6323217, Length=175, Percent_Identity=32.5714285714286, Blast_Score=65, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6322640, Length=233, Percent_Identity=27.4678111587983, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24659289, Length=178, Percent_Identity=34.2696629213483, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI19920532, Length=167, Percent_Identity=32.9341317365269, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24580930, Length=167, Percent_Identity=32.9341317365269, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI281363262, Length=162, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24653245, Length=162, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24585557, Length=187, Percent_Identity=33.6898395721925, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI45552437, Length=187, Percent_Identity=33.6898395721925, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI17647959, Length=161, Percent_Identity=32.2981366459627, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI85726357, Length=164, Percent_Identity=31.7073170731707, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI85725262, Length=203, Percent_Identity=29.064039408867, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI161076682, Length=154, Percent_Identity=31.1688311688312, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI161076684, Length=154, Percent_Identity=31.1688311688312, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24581617, Length=154, Percent_Identity=31.1688311688312, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24581615, Length=154, Percent_Identity=31.1688311688312, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI28574533, Length=157, Percent_Identity=33.1210191082803, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 23949; Mature: 23949

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGE
CEEECCCCEECCHHHHEEECEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHH
LWLNEQRIDMLPTAQRQIGILFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALER
EEECCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH
SGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDNFRQWVFSEV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHH
RALAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGE
CEEECCCCEECCHHHHEEECEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHH
LWLNEQRIDMLPTAQRQIGILFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALER
EEECCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH
SGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDNFRQWVFSEV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHH
RALAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]