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The map label for this gene is yobD

Identifier: 30062926

GI number: 30062926

Start: 1481947

End: 1482423

Strand: Reverse

Name: yobD

Synonym: S1523

Alternate gene names: 30062926

Gene position: 1482423-1481947 (Counterclockwise)

Preceding gene: 30062927

Following gene: 30062925

Centisome position: 32.23

GC content: 45.07

Gene sequence:

>477_bases
ATGACAATCACGGACCTGGTACTGATTCTTTTCATCGCCGCACTCCTGGCCTTCGCGATCTACGATCAGTTCATCATGCC
CCGCCGTAACGGCCCCACCCTGCTGGCAATTCCTTTGCTCCGGCGTGGTCGCATCGATAGCGTTATCTTCGTCGGATTGA
TTGTCATTCTTATCTATAACAACGTCACGAATCATGGCGCGCTAATAACAACATGGTTATTAAGTGCACTGGCTCTGATG
GGTTTTTATATATTCTGGATCCGCATTCCGAAGATCATCTTTAAACAAAAAGGTTTTTTCTTCGCCAATGTCTGGATTGA
ATATAGCCGAATCAAAGCGATGAACTTGTCGGAAGATGGCGTGTTGGTGATGCAATTAGAACAGCGTCGGCTGTTAATCC
GCGTTCGAAATATCGACGATCTGGAAAAAATTTATAAGCTTCTCGTATCAGGTAATGCTGCCAACTTACTGATTTAG

Upstream 100 bases:

>100_bases
CGTCATCGGTATCGCTGGTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTCGTACACTACCGGGGCCTTTTGGCCCCG
TTTTTTTATCTGGAGGATTA

Downstream 100 bases:

>100_bases
TGTATGATGGTGATTTTAAGGTGCTTGCGTGGCTTCCATTTCCATCAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGG
TGCGTAACGGCAAAAGCACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MTITDLVLILFIAALLAFAIYDQFIMPRRNGPTLLAIPLLRRGRIDSVIFVGLIVILIYNNVTNHGALITTWLLSALALM
GFYIFWIRIPKIIFKQKGFFFANVWIEYSRIKAMNLSEDGVLVMQLEQRRLLIRVRNIDDLEKIYKLLVSGNAANLLI

Sequences:

>Translated_158_residues
MTITDLVLILFIAALLAFAIYDQFIMPRRNGPTLLAIPLLRRGRIDSVIFVGLIVILIYNNVTNHGALITTWLLSALALM
GFYIFWIRIPKIIFKQKGFFFANVWIEYSRIKAMNLSEDGVLVMQLEQRRLLIRVRNIDDLEKIYKLLVSGNAANLLI
>Mature_157_residues
TITDLVLILFIAALLAFAIYDQFIMPRRNGPTLLAIPLLRRGRIDSVIFVGLIVILIYNNVTNHGALITTWLLSALALMG
FYIFWIRIPKIIFKQKGFFFANVWIEYSRIKAMNLSEDGVLVMQLEQRRLLIRVRNIDDLEKIYKLLVSGNAANLLI

Specific function: Unknown

COG id: COG4811

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0266 family

Homologues:

Organism=Escherichia coli, GI1788123, Length=150, Percent_Identity=99.3333333333333, Blast_Score=296, Evalue=4e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOBD_SHIBS (Q321Z7)

Other databases:

- EMBL:   CP000036
- RefSeq:   YP_407689.1
- EnsemblBacteria:   EBESCT00000076983
- GeneID:   3780001
- GenomeReviews:   CP000036_GR
- KEGG:   sbo:SBO_1232
- GeneTree:   EBGT00050000010262
- HOGENOM:   HBG391110
- OMA:   RVRNIDN
- PhylomeDB:   Q321Z7
- ProtClustDB:   PRK02913
- BioCyc:   SBOY300268:SBO_1232-MONOMER
- HAMAP:   MF_01071
- InterPro:   IPR009328
- PIRSF:   PIRSF020687
- ProDom:   PD091196

Pfam domain/function: PF06173 DUF986

EC number: NA

Molecular weight: Translated: 18167; Mature: 18036

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x117e1e44)-; HASH(0x11c60bd4)-; HASH(0x10862e90)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTITDLVLILFIAALLAFAIYDQFIMPRRNGPTLLAIPLLRRGRIDSVIFVGLIVILIYN
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHC
NVTNHGALITTWLLSALALMGFYIFWIRIPKIIFKQKGFFFANVWIEYSRIKAMNLSEDG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEHEEEECCCCCC
VLVMQLEQRRLLIRVRNIDDLEKIYKLLVSGNAANLLI
EEEEEEHHHHHEEEECCCHHHHHHHHHHHCCCCCCCCH
>Mature Secondary Structure 
TITDLVLILFIAALLAFAIYDQFIMPRRNGPTLLAIPLLRRGRIDSVIFVGLIVILIYN
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHC
NVTNHGALITTWLLSALALMGFYIFWIRIPKIIFKQKGFFFANVWIEYSRIKAMNLSEDG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEHEEEECCCCCC
VLVMQLEQRRLLIRVRNIDDLEKIYKLLVSGNAANLLI
EEEEEEHHHHHEEEECCCHHHHHHHHHHHCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA