| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
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The map label for this gene is 30062718
Identifier: 30062718
GI number: 30062718
Start: 1238816
End: 1239838
Strand: Reverse
Name: 30062718
Synonym: S1280
Alternate gene names: NA
Gene position: 1239838-1238816 (Counterclockwise)
Preceding gene: 30062719
Following gene: 30062717
Centisome position: 26.96
GC content: 54.06
Gene sequence:
>1023_bases ATGCCCATAACCAGACGGACGTTTGCGCAGGCACTTGCATCTACCCTGCTCCTGCAGTCTCTACCGTCCTTTTCACAAAC AGTTAATCGTTTTGCTTCGCAATCTCTTCCCGAAGCCCAAAACATTACACGCATCGTCAGCGCAGGCGCGCCCGCCGATT TGCTCTTGCTGGCTGTCGCGCCAGAAAAAATGGTCGGTTTTTCCTCTTTTGATTTTGCCCGTCAGGCATTAATTCCATTG CCAGAGCACATTCGCCAGTTACCCAGGCTGGGACGACTCGCCGGGCGCGCCAGCACACTATCGCTGGAAGGGCTTATGGC GTTACATCCCGATTTGGTCGTTGATTGCGGCAATACGGATGAAACCTTGATCTCCCAGGCACGGCAGGTTAGCGAACAGA CACAAATCCCCTGGTTATTGCTTAACGGAAAACTGGCGCAATCAGCAGAACAGTTAACAACGCTTGGCAAAACGTTAGGC GAAGAGCACCGCGCCGCAGAACAAGCCAATCTCGCCAGCCACTTCGTTGGTGAAGCTCAGGCATTCGCCACCTCACCCGC CGCTAACCTCCGCTTTTATGCTGCGCGCGGTCCCCGAGGGCTGGAAACGGGCTTACAGGGTTCGTTGCATACCGAGGCGG CGGAATTATTAGGTTTGCACAACGTCGCGCAAATAGCCGATCGCCACGGCCTGACACAGGTTTCCATGGAAAATCTCCTG CGCTGGCAGCCGGATATTATTCTGGTTCAGGAGGCCGTTACTGCAGATTTTATTCGTCGTGATCCTCTCTGGCAGGGCGT GAAAGCCGTTGCGGAACAACGCATCTTATTTTTAAGTGGCTTGCCCTTTGGCTGGCTCGATGCCCCGCCGGGAATCAACC GTCTTCTGGGATTACGCAGACTTCACGCCTGGCTGGATCCCGCCATCAATCGCCAGTTTAAAAGTGACATGCAGCATTAC GCCCAACTGTTCTGGCATTGTTCACTCAGTGATGCCGACTATCAAAAATTGGTGGCGAGCTAA
Upstream 100 bases:
>100_bases CACATCTTCATGTTTTCAATAGCTAAACTTTGATATTGAACATGATTTTTATCGATATATATGAAAGTATATATCGATTT TACTTTTCAGGATGTTCACC
Downstream 100 bases:
>100_bases TGAGAATCGTAAACGGATGTATTTTGCTGCTGGCAGCTATCAGTATCACTTTTGCCGCCGTAAGTGGGGCTTATCATCTC GATATGCAGCAACTGCTGGC
Product: putative ATP-binding protein of ABC transporter
Products: NA
Alternate protein names: Twin-Arginine Translocation Pathway Signal
Number of amino acids: Translated: 340; Mature: 339
Protein sequence:
>340_residues MPITRRTFAQALASTLLLQSLPSFSQTVNRFASQSLPEAQNITRIVSAGAPADLLLLAVAPEKMVGFSSFDFARQALIPL PEHIRQLPRLGRLAGRASTLSLEGLMALHPDLVVDCGNTDETLISQARQVSEQTQIPWLLLNGKLAQSAEQLTTLGKTLG EEHRAAEQANLASHFVGEAQAFATSPAANLRFYAARGPRGLETGLQGSLHTEAAELLGLHNVAQIADRHGLTQVSMENLL RWQPDIILVQEAVTADFIRRDPLWQGVKAVAEQRILFLSGLPFGWLDAPPGINRLLGLRRLHAWLDPAINRQFKSDMQHY AQLFWHCSLSDADYQKLVAS
Sequences:
>Translated_340_residues MPITRRTFAQALASTLLLQSLPSFSQTVNRFASQSLPEAQNITRIVSAGAPADLLLLAVAPEKMVGFSSFDFARQALIPL PEHIRQLPRLGRLAGRASTLSLEGLMALHPDLVVDCGNTDETLISQARQVSEQTQIPWLLLNGKLAQSAEQLTTLGKTLG EEHRAAEQANLASHFVGEAQAFATSPAANLRFYAARGPRGLETGLQGSLHTEAAELLGLHNVAQIADRHGLTQVSMENLL RWQPDIILVQEAVTADFIRRDPLWQGVKAVAEQRILFLSGLPFGWLDAPPGINRLLGLRRLHAWLDPAINRQFKSDMQHY AQLFWHCSLSDADYQKLVAS >Mature_339_residues PITRRTFAQALASTLLLQSLPSFSQTVNRFASQSLPEAQNITRIVSAGAPADLLLLAVAPEKMVGFSSFDFARQALIPLP EHIRQLPRLGRLAGRASTLSLEGLMALHPDLVVDCGNTDETLISQARQVSEQTQIPWLLLNGKLAQSAEQLTTLGKTLGE EHRAAEQANLASHFVGEAQAFATSPAANLRFYAARGPRGLETGLQGSLHTEAAELLGLHNVAQIADRHGLTQVSMENLLR WQPDIILVQEAVTADFIRRDPLWQGVKAVAEQRILFLSGLPFGWLDAPPGINRLLGLRRLHAWLDPAINRQFKSDMQHYA QLFWHCSLSDADYQKLVAS
Specific function: Unknown
COG id: COG0614
COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37352; Mature: 37221
Theoretical pI: Translated: 7.08; Mature: 7.08
Prosite motif: PS50983 FE_B12_PBP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPITRRTFAQALASTLLLQSLPSFSQTVNRFASQSLPEAQNITRIVSAGAPADLLLLAVA CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHEEEEEEC PEKMVGFSSFDFARQALIPLPEHIRQLPRLGRLAGRASTLSLEGLMALHPDLVVDCGNTD HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCCH ETLISQARQVSEQTQIPWLLLNGKLAQSAEQLTTLGKTLGEEHRAAEQANLASHFVGEAQ HHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AFATSPAANLRFYAARGPRGLETGLQGSLHTEAAELLGLHNVAQIADRHGLTQVSMENLL HHHCCCCCCEEEEECCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH RWQPDIILVQEAVTADFIRRDPLWQGVKAVAEQRILFLSGLPFGWLDAPPGINRLLGLRR HCCCCEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHH LHAWLDPAINRQFKSDMQHYAQLFWHCSLSDADYQKLVAS HHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC >Mature Secondary Structure PITRRTFAQALASTLLLQSLPSFSQTVNRFASQSLPEAQNITRIVSAGAPADLLLLAVA CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHEEEEEEC PEKMVGFSSFDFARQALIPLPEHIRQLPRLGRLAGRASTLSLEGLMALHPDLVVDCGNTD HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCCH ETLISQARQVSEQTQIPWLLLNGKLAQSAEQLTTLGKTLGEEHRAAEQANLASHFVGEAQ HHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AFATSPAANLRFYAARGPRGLETGLQGSLHTEAAELLGLHNVAQIADRHGLTQVSMENLL HHHCCCCCCEEEEECCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH RWQPDIILVQEAVTADFIRRDPLWQGVKAVAEQRILFLSGLPFGWLDAPPGINRLLGLRR HCCCCEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHH LHAWLDPAINRQFKSDMQHYAQLFWHCSLSDADYQKLVAS HHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA