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The map label for this gene is ymfO [C]

Identifier: 30062669

GI number: 30062669

Start: 1186865

End: 1187992

Strand: Direct

Name: ymfO [C]

Synonym: S1223

Alternate gene names: 30062669

Gene position: 1186865-1187992 (Clockwise)

Preceding gene: 30062668

Following gene: 30062670

Centisome position: 25.81

GC content: 57.09

Gene sequence:

>1128_bases
ATGACGCTTGATGAATTTATGGCGCTGGCCGGCACATCGAACACGGGGGCGGGTGAGTACGTATCATCTGGGACAGCGGA
ATCACTCCCCGCCGTCATGAACGCCGTCACGGTCATCTCTGACGCGGTGGCTACCATGCCGTGTTACCTGTACCTGGTAC
GCAATGAGAAGGGGAAGGAGGCCCGCGAATGGCTTGATTCTCATCCGGTCGATCACATCCTCAACGAGCGCCCGAACGCG
TGGCAGACACCCTACCAGTTTAAGCGAATGATGATCCGCTACTGCCTGTTAAGTGGTAATGCTTATGCGGTTATTCAGTG
GGGGCGTGATGGTTTTCCGGCGGCTTTACATCCTTACCCGCCGCAGTCGGTGAACGTGGAGCAGACAGGTGATCATAACT
GGCGCTACTGCATCACTGACGCCTACACCGGAAACATCCGCAACTATTTACCGTGGGAGGTTCTCCACCTTCGTTACTCC
ACGGATGACGGTTTTATGGGGCGCTCACCTGTAACCATCTGCCGCGAATCGCTGGGGCTTGGGCTGGCCCAACAACGCCA
CGGCGCGAGCGTGATGCGTGATGGCATGATGGCGGCAGGGGTTATCACGTCAGGCGAATGGCTGGACGGCGTGAAGGGCA
AACAGGCATTAGCCGCACTGGAACGCTACAAAGGGGCCAGAAACGCCGGAAAAACGCCCATCCTTGAAGGGGGGATGAGC
TATCAGCAGCTGGGCATGAGTAATCAGGATGCCGAATGGCTGGCCTCCCGTCGCTTCACCATTGAAGACATCGCCCGAAT
GTTCAACGTCTCGCCGATTTTTTTGCAGGAATACAGCAACAGCACCTACAGCAACTTCAGCGAGGCAAGCCGCGCATTTC
TCACCATGACGATGCGCCCGTGGCTGGCGAACTTTGAGCAGCAGATAAAAAACGCCTTGCTGGTGGCCTCGCCTGTACCT
GGTATCCGGTATCAGGTGGAGTTTGACAGCGCGGACCTGTTACGGGCCACACCTGGCGAACGCTTTGCCACCTATGAGCG
CGGCATAAAATCCGACGTTATGTGTCCGAACGAAGCCCGCGAACGTGAAGGGCTGTCACCGCGTGATGGTGGTGATGAGT
TCAGCTAG

Upstream 100 bases:

>100_bases
CACCCCGAAAAAATGCCGCGTGCGGATAATCGCCGCTGGTGGGCGGATTTAGCGGGGGTGTGATATGTGGCCTTTCAGAC
GAAAAAAAGAGCAGCGCAGC

Downstream 100 bases:

>100_bases
GCATGGAAACAGGAAGTAAAAATCAGCGAGGGAGAAAAACCGGAATGAACATAGGGCGACTGCGTGACAGGATAACGATT
CAGACCCTGAAACAGACCAG

Product: putative head portal protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MTLDEFMALAGTSNTGAGEYVSSGTAESLPAVMNAVTVISDAVATMPCYLYLVRNEKGKEAREWLDSHPVDHILNERPNA
WQTPYQFKRMMIRYCLLSGNAYAVIQWGRDGFPAALHPYPPQSVNVEQTGDHNWRYCITDAYTGNIRNYLPWEVLHLRYS
TDDGFMGRSPVTICRESLGLGLAQQRHGASVMRDGMMAAGVITSGEWLDGVKGKQALAALERYKGARNAGKTPILEGGMS
YQQLGMSNQDAEWLASRRFTIEDIARMFNVSPIFLQEYSNSTYSNFSEASRAFLTMTMRPWLANFEQQIKNALLVASPVP
GIRYQVEFDSADLLRATPGERFATYERGIKSDVMCPNEAREREGLSPRDGGDEFS

Sequences:

>Translated_375_residues
MTLDEFMALAGTSNTGAGEYVSSGTAESLPAVMNAVTVISDAVATMPCYLYLVRNEKGKEAREWLDSHPVDHILNERPNA
WQTPYQFKRMMIRYCLLSGNAYAVIQWGRDGFPAALHPYPPQSVNVEQTGDHNWRYCITDAYTGNIRNYLPWEVLHLRYS
TDDGFMGRSPVTICRESLGLGLAQQRHGASVMRDGMMAAGVITSGEWLDGVKGKQALAALERYKGARNAGKTPILEGGMS
YQQLGMSNQDAEWLASRRFTIEDIARMFNVSPIFLQEYSNSTYSNFSEASRAFLTMTMRPWLANFEQQIKNALLVASPVP
GIRYQVEFDSADLLRATPGERFATYERGIKSDVMCPNEAREREGLSPRDGGDEFS
>Mature_374_residues
TLDEFMALAGTSNTGAGEYVSSGTAESLPAVMNAVTVISDAVATMPCYLYLVRNEKGKEAREWLDSHPVDHILNERPNAW
QTPYQFKRMMIRYCLLSGNAYAVIQWGRDGFPAALHPYPPQSVNVEQTGDHNWRYCITDAYTGNIRNYLPWEVLHLRYST
DDGFMGRSPVTICRESLGLGLAQQRHGASVMRDGMMAAGVITSGEWLDGVKGKQALAALERYKGARNAGKTPILEGGMSY
QQLGMSNQDAEWLASRRFTIEDIARMFNVSPIFLQEYSNSTYSNFSEASRAFLTMTMRPWLANFEQQIKNALLVASPVPG
IRYQVEFDSADLLRATPGERFATYERGIKSDVMCPNEAREREGLSPRDGGDEFS

Specific function: Unknown

COG id: COG4695

COG function: function code S; Phage-related protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage portal family. HK97 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006944
- InterPro:   IPR006427 [H]

Pfam domain/function: PF04860 Phage_portal [H]

EC number: NA

Molecular weight: Translated: 41900; Mature: 41769

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLDEFMALAGTSNTGAGEYVSSGTAESLPAVMNAVTVISDAVATMPCYLYLVRNEKGKE
CCHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCHH
AREWLDSHPVDHILNERPNAWQTPYQFKRMMIRYCLLSGNAYAVIQWGRDGFPAALHPYP
HHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC
PQSVNVEQTGDHNWRYCITDAYTGNIRNYLPWEVLHLRYSTDDGFMGRSPVTICRESLGL
CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHCC
GLAQQRHGASVMRDGMMAAGVITSGEWLDGVKGKQALAALERYKGARNAGKTPILEGGMS
CHHHHHCCHHHHHCCCHHEEEEECCCHHCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCC
YQQLGMSNQDAEWLASRRFTIEDIARMFNVSPIFLQEYSNSTYSNFSEASRAFLTMTMRP
HHHHCCCCCCHHHHHHCCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHEEEEHHH
WLANFEQQIKNALLVASPVPGIRYQVEFDSADLLRATPGERFATYERGIKSDVMCPNEAR
HHHHHHHHHHHHEEEECCCCCCEEEEEECCCHHHCCCCCCHHHHHHCCCCCCCCCCCHHH
EREGLSPRDGGDEFS
HHCCCCCCCCCCCCC
>Mature Secondary Structure 
TLDEFMALAGTSNTGAGEYVSSGTAESLPAVMNAVTVISDAVATMPCYLYLVRNEKGKE
CHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCHH
AREWLDSHPVDHILNERPNAWQTPYQFKRMMIRYCLLSGNAYAVIQWGRDGFPAALHPYP
HHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC
PQSVNVEQTGDHNWRYCITDAYTGNIRNYLPWEVLHLRYSTDDGFMGRSPVTICRESLGL
CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHCC
GLAQQRHGASVMRDGMMAAGVITSGEWLDGVKGKQALAALERYKGARNAGKTPILEGGMS
CHHHHHCCHHHHHCCCHHEEEEECCCHHCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCC
YQQLGMSNQDAEWLASRRFTIEDIARMFNVSPIFLQEYSNSTYSNFSEASRAFLTMTMRP
HHHHCCCCCCHHHHHHCCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHEEEEHHH
WLANFEQQIKNALLVASPVPGIRYQVEFDSADLLRATPGERFATYERGIKSDVMCPNEAR
HHHHHHHHHHHHEEEECCCCCCEEEEEECCCHHHCCCCCCHHHHHHCCCCCCCCCCCHHH
EREGLSPRDGGDEFS
HHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA