| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
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The map label for this gene is yceA
Identifier: 30062593
GI number: 30062593
Start: 1107457
End: 1108509
Strand: Direct
Name: yceA
Synonym: S1139
Alternate gene names: 30062593
Gene position: 1107457-1108509 (Clockwise)
Preceding gene: 30062590
Following gene: 30062604
Centisome position: 24.08
GC content: 49.67
Gene sequence:
>1053_bases ATGCCAGTGTTACACAACCGCATTTCCAACGACGCGTTAAAAGCCAAAATGTTGGCTGAGAGCGAACCGCGAACCACCAT TTCGTTTTACAAGTATTTCCACATCGCCGATCCTAAGGCGACCCGTGACGCTTTATATCAGCTGTTTACCGCGCTGAATG TTTTTGGGCGAGTGTATCTGGCGCATGAGGGCATTAACGCGCAAATCAGCGTACCTGCGAGCAATGTTGAAACATTTCGC GCGCAGCTCTATGCCTTCGACCCGGCTTTAGAGGGTTTACGCCTGAATATCGCGTTGGATGATGACGGGAAATCCTTCTG GGTACTGCGCATGAAGGTACGCGATCGCATTGTTGCCGACGGTATTGACGATCCTCACTTTGATGCCAGCAATGTTGGTG AGTATCTGCAAGCGGCGGAAGTGAACGCCATGCTTGACGATCCCGATGCACTATTTATCGACATGCGTAACCACTATGAG TATGAAGTGGGGCACTTTGAAAACGCGCTCGAAATTCCGGCAGATACCTTCCGTGAGCAGCTGCCAAAAGCAGTCGAGAT GATGCAGGCACATAAAGATAAAAAAATCGTCATGTACTGCACCGGCGGCATTCGTTGTGAAAAGGCCAGTGCCTGGATGA AACATAACGGATTCAACAAAGTCTGGCATATCGAGGGCGGAATTATTGAATACGCCCGTAAGGCGCGCGAGCAGGGCTTG CCGGTGCGTTTTATTGGCAAAAATTTTGTTTTTGACGAGCGGATGGGCGAACGTATATCGGATGAGATTATCGCGCATTG CCACCAGTGCGGCGCGCCGTGCGACAGCCATACCAACTGTAAAAATGATGGCTGCCACCTGCTGTTTATTCAGTGTCCAG TATGCGCGGAAAAATACAAAGGTTGTTGTAGTGAGATTTGCTGCGAAGAAAGCGCGTTACCGCCAGAAGAACAGCGACGC CGTCGGGCAGGACGTGAAAATGGCAATAAGATCTTTAATAAGTCTCGTGGACGTCTGAATACAACACTGGGTATTCCTGA TCCAACAGAATAA
Upstream 100 bases:
>100_bases AATGCGCAAATGTAGCGTAAAATGTGTGGATGTTAATTATCGATAATTGCTATATCATGCCGCGGATTTTTACTTTCCCA TCTCGCAGGAACCGTACACC
Downstream 100 bases:
>100_bases ATATCATTGCCGGATGCGTGCCATCCGGCAACATTTCACTCTTACTTCTGCTGTACGCCTTCCACTGAAATAATCAGATC CACTTCCTGAGAAGCTGGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 350; Mature: 349
Protein sequence:
>350_residues MPVLHNRISNDALKAKMLAESEPRTTISFYKYFHIADPKATRDALYQLFTALNVFGRVYLAHEGINAQISVPASNVETFR AQLYAFDPALEGLRLNIALDDDGKSFWVLRMKVRDRIVADGIDDPHFDASNVGEYLQAAEVNAMLDDPDALFIDMRNHYE YEVGHFENALEIPADTFREQLPKAVEMMQAHKDKKIVMYCTGGIRCEKASAWMKHNGFNKVWHIEGGIIEYARKAREQGL PVRFIGKNFVFDERMGERISDEIIAHCHQCGAPCDSHTNCKNDGCHLLFIQCPVCAEKYKGCCSEICCEESALPPEEQRR RRAGRENGNKIFNKSRGRLNTTLGIPDPTE
Sequences:
>Translated_350_residues MPVLHNRISNDALKAKMLAESEPRTTISFYKYFHIADPKATRDALYQLFTALNVFGRVYLAHEGINAQISVPASNVETFR AQLYAFDPALEGLRLNIALDDDGKSFWVLRMKVRDRIVADGIDDPHFDASNVGEYLQAAEVNAMLDDPDALFIDMRNHYE YEVGHFENALEIPADTFREQLPKAVEMMQAHKDKKIVMYCTGGIRCEKASAWMKHNGFNKVWHIEGGIIEYARKAREQGL PVRFIGKNFVFDERMGERISDEIIAHCHQCGAPCDSHTNCKNDGCHLLFIQCPVCAEKYKGCCSEICCEESALPPEEQRR RRAGRENGNKIFNKSRGRLNTTLGIPDPTE >Mature_349_residues PVLHNRISNDALKAKMLAESEPRTTISFYKYFHIADPKATRDALYQLFTALNVFGRVYLAHEGINAQISVPASNVETFRA QLYAFDPALEGLRLNIALDDDGKSFWVLRMKVRDRIVADGIDDPHFDASNVGEYLQAAEVNAMLDDPDALFIDMRNHYEY EVGHFENALEIPADTFREQLPKAVEMMQAHKDKKIVMYCTGGIRCEKASAWMKHNGFNKVWHIEGGIIEYARKAREQGLP VRFIGKNFVFDERMGERISDEIIAHCHQCGAPCDSHTNCKNDGCHLLFIQCPVCAEKYKGCCSEICCEESALPPEEQRRR RAGRENGNKIFNKSRGRLNTTLGIPDPTE
Specific function: Unknown. [C]
COG id: COG1054
COG function: function code R; Predicted sulfurtransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 rhodanese domain [H]
Homologues:
Organism=Homo sapiens, GI111038120, Length=302, Percent_Identity=28.8079470198675, Blast_Score=119, Evalue=5e-27, Organism=Escherichia coli, GI1787294, Length=350, Percent_Identity=99.7142857142857, Blast_Score=731, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001763 - InterPro: IPR020936 [H]
Pfam domain/function: PF00581 Rhodanese [H]
EC number: NA
Molecular weight: Translated: 39736; Mature: 39604
Theoretical pI: Translated: 6.44; Mature: 6.44
Prosite motif: PS50206 RHODANESE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 3.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 6.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVLHNRISNDALKAKMLAESEPRTTISFYKYFHIADPKATRDALYQLFTALNVFGRVYL CCCCHHHHCHHHHHHHHHHCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHEEEE AHEGINAQISVPASNVETFRAQLYAFDPALEGLRLNIALDDDGKSFWVLRMKVRDRIVAD EECCCCEEEECCCHHHHHHHHHHEEECCCCCCEEEEEEEECCCCEEEEEEEEHHHHHHHC GIDDPHFDASNVGEYLQAAEVNAMLDDPDALFIDMRNHYEYEVGHFENALEIPADTFREQ CCCCCCCCHHHHHHHHHHHHHHHEECCCCEEEEEECCCCEEECCCCCCCCCCCHHHHHHH LPKAVEMMQAHKDKKIVMYCTGGIRCEKASAWMKHNGFNKVWHIEGGIIEYARKAREQGL HHHHHHHHHHCCCCEEEEEECCCEEECHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCC PVRFIGKNFVFDERMGERISDEIIAHCHQCGAPCDSHTNCKNDGCHLLFIQCPVCAEKYK CEEECCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCHHHHHHH GCCSEICCEESALPPEEQRRRRAGRENGNKIFNKSRGRLNTTLGIPDPTE HHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHCCCCCEEEEECCCCCCC >Mature Secondary Structure PVLHNRISNDALKAKMLAESEPRTTISFYKYFHIADPKATRDALYQLFTALNVFGRVYL CCCHHHHCHHHHHHHHHHCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHEEEE AHEGINAQISVPASNVETFRAQLYAFDPALEGLRLNIALDDDGKSFWVLRMKVRDRIVAD EECCCCEEEECCCHHHHHHHHHHEEECCCCCCEEEEEEEECCCCEEEEEEEEHHHHHHHC GIDDPHFDASNVGEYLQAAEVNAMLDDPDALFIDMRNHYEYEVGHFENALEIPADTFREQ CCCCCCCCHHHHHHHHHHHHHHHEECCCCEEEEEECCCCEEECCCCCCCCCCCHHHHHHH LPKAVEMMQAHKDKKIVMYCTGGIRCEKASAWMKHNGFNKVWHIEGGIIEYARKAREQGL HHHHHHHHHHCCCCEEEEEECCCEEECHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCC PVRFIGKNFVFDERMGERISDEIIAHCHQCGAPCDSHTNCKNDGCHLLFIQCPVCAEKYK CEEECCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCHHHHHHH GCCSEICCEESALPPEEQRRRRAGRENGNKIFNKSRGRLNTTLGIPDPTE HHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHCCCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA