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The map label for this gene is ycdU

Identifier: 30062558

GI number: 30062558

Start: 1075495

End: 1076481

Strand: Direct

Name: ycdU

Synonym: S1096

Alternate gene names: 30062558

Gene position: 1075495-1076481 (Clockwise)

Preceding gene: 30062555

Following gene: 30062559

Centisome position: 23.38

GC content: 40.83

Gene sequence:

>987_bases
ATGATTCCTGATTATTTAACTTTTATTCGCTTTCAGGATAAACGAAATCTGATATACATTTATGCTATTGGACTTATTCT
GATAGGCTTTTATTGGAAAAATGCAGGGTTTACTTTTCCATCAGAGGATATTGGTGTAGTTAGTGGGATTCTGGCCCTGG
TGCTGTATAATTTTATTTTTGATCTCAAGGCGTACTGGGCTTATAAATGCGTCACGAAGAATATCGATTTTTCGTGGTTT
AAGAAAAAGCAGAACCACAAAATAGAATTATTTCTTACACAACCTCTGGTGGCAGGATTTCTGTCGTTAATCATGTTGAG
TGCAATGAGTTGGGGGCTATACCAGCTTCTACCCTCGTTATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCA
TCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCGAAAAAAGTAAAATATAAA
AGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGCTGCGTAACAG
TGATTCTTTTGTGACAGAGGGGCAGTGGTTAACGTTTAAATCGATAATTGCATTGCTCATTCTTTGTGGCGTAGTGTTGG
CGATTAATCTGTTTTTTCTGCGCTTCTCCAAGCGGCCCGCTTTTCTGGGCAGGTTTTTTTTGCAGGAAATCGATCTGTTT
TTCTCCAGTGAAAATACGTTGTCGACCTTTTTTGCCAAGCCGCTTTGGCTTCGGTTATTCATATTGCGGGTTATTGAAAT
GATGTGGATTACGCTGGTGTCGGTATTGGCAACGCTTGTGGAATGGCGGATTTGGTTTGAAGCCTATTTTTTACTCTGCT
ATGTACCGTGCTTAATTTACTATTTTTTCCATTGTCGATTCCTCTGGCATAACGATTTTATGATGGCATGTGACATGTAT
TTCCGTTGGGGGCATTTTAATAAGTGA

Upstream 100 bases:

>100_bases
ATAAGCCCTATTTGGGGAATATGTTAAATGATTTTGCTGGCGTGGATCAGCAACGAGTTATGCATTGTCGTAAAGCATTT
AGTGATGCAAAGGTATTCAA

Downstream 100 bases:

>100_bases
GGAAGTTACAGGAAGTGACCAGATAACGCATATATGTTCTGTACTATCTTACGCATTTTGATTGTTGACTGAGTAACCAG
ACAGTTGATGTGCACAATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MIPDYLTFIRFQDKRNLIYIYAIGLILIGFYWKNAGFTFPSEDIGVVSGILALVLYNFIFDLKAYWAYKCVTKNIDFSWF
KKKQNHKIELFLTQPLVAGFLSLIMLSAMSWGLYQLLPSLYALFLISLLGPLVIFLLFRMIRTSYVKQVAISVAKKVKYK
SLTRYVLLSVCISTVVNLLTISPLRNSDSFVTEGQWLTFKSIIALLILCGVVLAINLFFLRFSKRPAFLGRFFLQEIDLF
FSSENTLSTFFAKPLWLRLFILRVIEMMWITLVSVLATLVEWRIWFEAYFLLCYVPCLIYYFFHCRFLWHNDFMMACDMY
FRWGHFNK

Sequences:

>Translated_328_residues
MIPDYLTFIRFQDKRNLIYIYAIGLILIGFYWKNAGFTFPSEDIGVVSGILALVLYNFIFDLKAYWAYKCVTKNIDFSWF
KKKQNHKIELFLTQPLVAGFLSLIMLSAMSWGLYQLLPSLYALFLISLLGPLVIFLLFRMIRTSYVKQVAISVAKKVKYK
SLTRYVLLSVCISTVVNLLTISPLRNSDSFVTEGQWLTFKSIIALLILCGVVLAINLFFLRFSKRPAFLGRFFLQEIDLF
FSSENTLSTFFAKPLWLRLFILRVIEMMWITLVSVLATLVEWRIWFEAYFLLCYVPCLIYYFFHCRFLWHNDFMMACDMY
FRWGHFNK
>Mature_328_residues
MIPDYLTFIRFQDKRNLIYIYAIGLILIGFYWKNAGFTFPSEDIGVVSGILALVLYNFIFDLKAYWAYKCVTKNIDFSWF
KKKQNHKIELFLTQPLVAGFLSLIMLSAMSWGLYQLLPSLYALFLISLLGPLVIFLLFRMIRTSYVKQVAISVAKKVKYK
SLTRYVLLSVCISTVVNLLTISPLRNSDSFVTEGQWLTFKSIIALLILCGVVLAINLFFLRFSKRPAFLGRFFLQEIDLF
FSSENTLSTFFAKPLWLRLFILRVIEMMWITLVSVLATLVEWRIWFEAYFLLCYVPCLIYYFFHCRFLWHNDFMMACDMY
FRWGHFNK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787267, Length=328, Percent_Identity=98.1707317073171, Blast_Score=644, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38716; Mature: 38716

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPDYLTFIRFQDKRNLIYIYAIGLILIGFYWKNAGFTFPSEDIGVVSGILALVLYNFIF
CCCHHHHHHEEECCCCEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
DLKAYWAYKCVTKNIDFSWFKKKQNHKIELFLTQPLVAGFLSLIMLSAMSWGLYQLLPSL
HHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHH
YALFLISLLGPLVIFLLFRMIRTSYVKQVAISVAKKVKYKSLTRYVLLSVCISTVVNLLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISPLRNSDSFVTEGQWLTFKSIIALLILCGVVLAINLFFLRFSKRPAFLGRFFLQEIDLF
HCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
FSSENTLSTFFAKPLWLRLFILRVIEMMWITLVSVLATLVEWRIWFEAYFLLCYVPCLIY
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFFHCRFLWHNDFMMACDMYFRWGHFNK
HHHHHHHHHCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIPDYLTFIRFQDKRNLIYIYAIGLILIGFYWKNAGFTFPSEDIGVVSGILALVLYNFIF
CCCHHHHHHEEECCCCEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
DLKAYWAYKCVTKNIDFSWFKKKQNHKIELFLTQPLVAGFLSLIMLSAMSWGLYQLLPSL
HHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHH
YALFLISLLGPLVIFLLFRMIRTSYVKQVAISVAKKVKYKSLTRYVLLSVCISTVVNLLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISPLRNSDSFVTEGQWLTFKSIIALLILCGVVLAINLFFLRFSKRPAFLGRFFLQEIDLF
HCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
FSSENTLSTFFAKPLWLRLFILRVIEMMWITLVSVLATLVEWRIWFEAYFLLCYVPCLIY
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFFHCRFLWHNDFMMACDMYFRWGHFNK
HHHHHHHHHCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]