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The map label for this gene is torR

Identifier: 30062532

GI number: 30062532

Start: 1049126

End: 1049818

Strand: Reverse

Name: torR

Synonym: S1065

Alternate gene names: 30062532

Gene position: 1049818-1049126 (Counterclockwise)

Preceding gene: 30062534

Following gene: 30062530

Centisome position: 22.83

GC content: 52.67

Gene sequence:

>693_bases
ATGCCACATCACATTGTTATTGTTGAAGATAAGCCGGTTACCCAGGCGCGATTACAATCCTACTTCACTCAGGAGGGGTA
TACCGTTTCCGTTACGGCGAGCGGTGCCGGGCTACGGGAAATTATGCAGAATCAGCCGGTAGATTTAATTCTGCTGGATA
TCAACTTACCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACC
GGACGCAGCGATCGGATTGACCGTATTGTTGGGCTGGAAATGGGCGCAGACGATTACGTCACCAAACCGCTGGAACTGCG
CGAACTGGTAGTACGGGTGAAAAATCTGCTCTGGCGAATCGACCTCGCGCGACAAGCTCAACCGCACACTCAGGACTACT
GCTATCGCTTTGCGGGTTATTGCCTGAATGTGTCGCGCCATACGCTGGAGCGGGATGGCGAGCCGATTAAACTGACCCGC
GCAGAGTATGAAATGTTGGTGGCATTTGTGACTAATCCGGGCGAAATTCTCAGCCGTGAGCGTCTGCTGCGTATGCTTTC
TGCGCGTCGGGTGGAAAACCCTGACCTGCGCACCGTCGATGTGTTAATTCGTCGTTTACGTCATAAACTCAGCGCGGATT
TACTGGTGACGCAACATGGTGAAGGTTATTTCTTAGCCGCTGATGTGTGCTGA

Upstream 100 bases:

>100_bases
CAGAGTTTCCGCATAATAACCCCTGTAGAATTATGGTTTAGTGAAGCGATCTTAATGAGCAAATATGAACAGATATGAAC
AGAATGAGTAAAACCCTCTG

Downstream 100 bases:

>100_bases
TAAAAATAGACCGGACGAAATCCCCCCGGTGACAGCGAGCGGCGGATATGTTCTCGGTCGGCATTTTTCGGCGTCAGAAC
TAAAATCGGTGGGCTGACAT

Product: DNA-binding transcriptional regulator TorR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MPHHIVIVEDKPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVT
GRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDYCYRFAGYCLNVSRHTLERDGEPIKLTR
AEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC

Sequences:

>Translated_230_residues
MPHHIVIVEDKPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVT
GRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDYCYRFAGYCLNVSRHTLERDGEPIKLTR
AEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
>Mature_229_residues
PHHIVIVEDKPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTG
RSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDYCYRFAGYCLNVSRHTLERDGEPIKLTRA
EYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC

Specific function: Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide (TMAO). Phosphorylated torR activates the transcription of the torCAD operon by binding to four decameric boxes located in the torCAD p

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1787229, Length=230, Percent_Identity=98.695652173913, Blast_Score=460, Evalue=1e-131,
Organism=Escherichia coli, GI1790863, Length=233, Percent_Identity=42.0600858369099, Blast_Score=188, Evalue=3e-49,
Organism=Escherichia coli, GI1789809, Length=232, Percent_Identity=34.051724137931, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1788394, Length=233, Percent_Identity=35.1931330472103, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1790860, Length=227, Percent_Identity=33.920704845815, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1786599, Length=231, Percent_Identity=32.4675324675325, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI87082012, Length=228, Percent_Identity=30.2631578947368, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1786784, Length=227, Percent_Identity=31.7180616740088, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1786911, Length=227, Percent_Identity=29.9559471365639, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI2367329, Length=231, Percent_Identity=30.7359307359307, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787375, Length=227, Percent_Identity=29.5154185022026, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1790552, Length=225, Percent_Identity=30.6666666666667, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1789402, Length=223, Percent_Identity=28.2511210762332, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI145693140, Length=211, Percent_Identity=29.8578199052133, Blast_Score=81, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26292; Mature: 26161

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHHIVIVEDKPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDEN
CCCEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHCCCCEEEEEEEECCCCC
GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI
CCHHHHHHHHCCCEEEEEEECCCCCHHHEEEEECCCCHHHCCCHHHHHHHHHHHHHHHHH
DLARQAQPHTQDYCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHEEEEEEEECCCHHHHHHH
RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECC
>Mature Secondary Structure 
PHHIVIVEDKPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDEN
CCEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHCCCCEEEEEEEECCCCC
GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI
CCHHHHHHHHCCCEEEEEEECCCCCHHHEEEEECCCCHHHCCCHHHHHHHHHHHHHHHHH
DLARQAQPHTQDYCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHEEEEEEEECCCHHHHHHH
RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]