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The map label for this gene is ybgD

Identifier: 30062118

GI number: 30062118

Start: 600357

End: 600923

Strand: Direct

Name: ybgD

Synonym: S0591

Alternate gene names: 30062118

Gene position: 600357-600923 (Clockwise)

Preceding gene: 30062117

Following gene: 30062119

Centisome position: 13.05

GC content: 47.62

Gene sequence:

>567_bases
ATGTTTAAAGGACAAAAAACATTGGCCGCACTGGCCGTATCTCTGCTGTTCACAGCACCTGTTTATGCGGCTGATGAAGG
ATCCGGTGAAATTCACTTTAAAGGTGAAGTTATTGAAGCACCGTGTGAAATACATCAGGATGATATTGATAAAGAGGTTG
AACTCGGTCAGGTGACCACCAGCCACATTAATCAGTCACATCACAGCGATGCCGTTGCTGTCGACCTGCTCTTAGTCAAC
TGTGATCTGGAAAACTCCAGCAACGGTTCCGGTGGCAAGATTTCTAAAGTTGCAGTCACCTTTGATAGCTCAGCGAAAAC
CACCGGCGCAGATCCGATTCTCAACAACACCAGCACGGGTGAAGCCACCGGCGTCGGCGTACGTTTAATGAATAAAGATC
AAAGCAATATCGTTTTAGGCACCGCTACTCCAGATATCGACCTGGCTCCGACCTCCAGCGAACAAACGCTGAATTTCTTT
GCCTGGATGGAACAAATTGATCAGGCTACACCTGTAACGCCAGGCGCAGTTACGGCGAATGCAACCTACGTGCTGGATTA
TAAATAA

Upstream 100 bases:

>100_bases
AAATTAATAATATTTTTAAGAAAAACTAAAAACATTCGACAATCAAATAAGATATTCTTGCACCGATATACTTTTTTCTT
TTCTGTTAAAGGACTCAGTT

Downstream 100 bases:

>100_bases
GTATTACTTTGGCGGCGCTATCGCCGCCTTTCATAAAATATTTATCAGGTATGGACACCGTGAATATTTATCGACTCTCT
TTTGTATCCTGCCTGGTCGT

Product: putative fimbrial-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEIHQDDIDKEVELGQVTTSHINQSHHSDAVAVDLLLVN
CDLENSSNGSGGKISKVAVTFDSSAKTTGADPILNNTSTGEATGVGVRLMNKDQSNIVLGTATPDIDLAPTSSEQTLNFF
AWMEQIDQATPVTPGAVTANATYVLDYK

Sequences:

>Translated_188_residues
MFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEIHQDDIDKEVELGQVTTSHINQSHHSDAVAVDLLLVN
CDLENSSNGSGGKISKVAVTFDSSAKTTGADPILNNTSTGEATGVGVRLMNKDQSNIVLGTATPDIDLAPTSSEQTLNFF
AWMEQIDQATPVTPGAVTANATYVLDYK
>Mature_188_residues
MFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEIHQDDIDKEVELGQVTTSHINQSHHSDAVAVDLLLVN
CDLENSSNGSGGKISKVAVTFDSSAKTTGADPILNNTSTGEATGVGVRLMNKDQSNIVLGTATPDIDLAPTSSEQTLNFF
AWMEQIDQATPVTPGAVTANATYVLDYK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1786938, Length=188, Percent_Identity=78.7234042553192, Blast_Score=307, Evalue=2e-85,
Organism=Escherichia coli, GI1789422, Length=187, Percent_Identity=37.4331550802139, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790769, Length=133, Percent_Identity=34.5864661654135, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786746, Length=187, Percent_Identity=27.2727272727273, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 19811; Mature: 19811

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEIHQDDIDKEVELGQVTT
CCCCHHHHHHHHHHHHHHCCEEEECCCCCEEEEECEEEECCCCCCCCCCCCCEEECCEEH
SHINQSHHSDAVAVDLLLVNCDLENSSNGSGGKISKVAVTFDSSAKTTGADPILNNTSTG
HHCCCCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCC
EATGVGVRLMNKDQSNIVLGTATPDIDLAPTSSEQTLNFFAWMEQIDQATPVTPGAVTAN
CCCEEEEEEECCCCCCEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEECC
ATYVLDYK
EEEEEEEC
>Mature Secondary Structure
MFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEIHQDDIDKEVELGQVTT
CCCCHHHHHHHHHHHHHHCCEEEECCCCCEEEEECEEEECCCCCCCCCCCCCEEECCEEH
SHINQSHHSDAVAVDLLLVNCDLENSSNGSGGKISKVAVTFDSSAKTTGADPILNNTSTG
HHCCCCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCC
EATGVGVRLMNKDQSNIVLGTATPDIDLAPTSSEQTLNFFAWMEQIDQATPVTPGAVTAN
CCCEEEEEEECCCCCCEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEECC
ATYVLDYK
EEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7984428 [H]