| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29350160
Identifier: 29350160
GI number: 29350160
Start: 6236032
End: 6237327
Strand: Reverse
Name: 29350160
Synonym: BT_4752
Alternate gene names: NA
Gene position: 6237327-6236032 (Counterclockwise)
Preceding gene: 29350166
Following gene: 29350159
Centisome position: 99.63
GC content: 47.61
Gene sequence:
>1296_bases ATGGCTAAGAAAAAGCAAGAACAACAAGAGCAGAGTCAGGACGAGCATGTAATGGCAGTCCTTGACAAGAGAACGAACAA AACCGCCGTCATTTCCAAAATGAACGAGCAGGACGGCAGTATCGAAGTCGTACCACCCGACAAGAAGAACAGCAACAGTT TTCTCAAACTGGACCGTACTTCACCACTGGAACTGTTTTTCACGAACTTCAAGAACCAGTATGAAAATCCCACAAGTTTC AGTTTCTTCCTCGTTCCTTTCGCCTTATTGGACAAGACGCTGAATGCGGTCATCCAAATCCGAAAAGGGGAAGATCCCGG ACCGGACGGCAAGAAGCTGGTGGAAAACAGCGAACTCAACGATGAAGGGCGTATCGCCAAACTTGCCCGACGGTATAAAT TTGATGAACACCAACTGCCGTGGAAAGACCTGAACGCCCTCGGCCTTGATAAAGAGACACTGTTCAACAATCATTGCATG GGCGAGTTTCTCAAAGGCAGAATCACTTCCACCGCCTTGCCTATCAGCAAAGAAATAAACGGAGAAAAGAAGGATATGGG CGAAGCCTGTTTCATGTGCGTGAAAGGTGCGGACGGCAAGGTGGAACTCAAAATCCTCACCCGTCTGGACAAGCCCCAAT ATGATTCGCCCGCCTATAAAGGTGTATTTACGGATGAAGAGAAGAACAAGCTGGCGGAAACAGGAACATTGGGAGGCATC AAGGAGATGAAGGACACCCTTACAGGAAATGTCTGCAAATGTTATGTCAGTTTCCACGAGACTACCAACCGAGTCATCAC CATGCCCGTGGATGCCATCAAAATCCCGGATTATATTTATGGAAAGAGACTGGACGACAAGCAGAAGCAGATACTTGCAT CGGGAGGTGAGCTTCCAGTCAATGACATACAGCGCAAAAATGACACCATGCTCTCCGGTGTGGCTTATGTTGATCCGACC ATCAGGGACATTGCTTTCAAACAATCCGACAAGCAGTTGAAGGTCAACGATACGATTTTAGGAGCCAAGATTTCCCCCGA ACAGAAAAAGATACTGGAAAATCACGGCATGGTATTCATCGAAAACATGCGCAACCCCAAGACCAGGCAACTTTTCTCGG ATGATGTACGATTCAGCAACAAGAGCAACAACCTGTTGATAGGCCGCAATGCCCGTGAATATAAGCCGGCAGTTGAGAAC CAGAAGAATGACAAGAAGAAAGAGACGAAACAAACGGCCCGTCATGTCGTATCTTCCAGACCGCAGGCCAGAAAGAGCAG CCTGTCATTCTCATAA
Upstream 100 bases:
>100_bases TACTTCCAAAACCTAATTCTCTATTAATTAAACCTCTACATTCGCACCGACGGGCTAAAGTTTACCCGGTAATTTATTGT ATCACTTAATTTTTTAATTT
Downstream 100 bases:
>100_bases TCCGACAACGAACAGAACGTTTACCGAATCTATATACCCGGTTTCCTCTCAGGTTATCGGGTATATTTCCGATTACTTCC CTATCATATTAATCTTTAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 431; Mature: 430
Protein sequence:
>431_residues MAKKKQEQQEQSQDEHVMAVLDKRTNKTAVISKMNEQDGSIEVVPPDKKNSNSFLKLDRTSPLELFFTNFKNQYENPTSF SFFLVPFALLDKTLNAVIQIRKGEDPGPDGKKLVENSELNDEGRIAKLARRYKFDEHQLPWKDLNALGLDKETLFNNHCM GEFLKGRITSTALPISKEINGEKKDMGEACFMCVKGADGKVELKILTRLDKPQYDSPAYKGVFTDEEKNKLAETGTLGGI KEMKDTLTGNVCKCYVSFHETTNRVITMPVDAIKIPDYIYGKRLDDKQKQILASGGELPVNDIQRKNDTMLSGVAYVDPT IRDIAFKQSDKQLKVNDTILGAKISPEQKKILENHGMVFIENMRNPKTRQLFSDDVRFSNKSNNLLIGRNAREYKPAVEN QKNDKKKETKQTARHVVSSRPQARKSSLSFS
Sequences:
>Translated_431_residues MAKKKQEQQEQSQDEHVMAVLDKRTNKTAVISKMNEQDGSIEVVPPDKKNSNSFLKLDRTSPLELFFTNFKNQYENPTSF SFFLVPFALLDKTLNAVIQIRKGEDPGPDGKKLVENSELNDEGRIAKLARRYKFDEHQLPWKDLNALGLDKETLFNNHCM GEFLKGRITSTALPISKEINGEKKDMGEACFMCVKGADGKVELKILTRLDKPQYDSPAYKGVFTDEEKNKLAETGTLGGI KEMKDTLTGNVCKCYVSFHETTNRVITMPVDAIKIPDYIYGKRLDDKQKQILASGGELPVNDIQRKNDTMLSGVAYVDPT IRDIAFKQSDKQLKVNDTILGAKISPEQKKILENHGMVFIENMRNPKTRQLFSDDVRFSNKSNNLLIGRNAREYKPAVEN QKNDKKKETKQTARHVVSSRPQARKSSLSFS >Mature_430_residues AKKKQEQQEQSQDEHVMAVLDKRTNKTAVISKMNEQDGSIEVVPPDKKNSNSFLKLDRTSPLELFFTNFKNQYENPTSFS FFLVPFALLDKTLNAVIQIRKGEDPGPDGKKLVENSELNDEGRIAKLARRYKFDEHQLPWKDLNALGLDKETLFNNHCMG EFLKGRITSTALPISKEINGEKKDMGEACFMCVKGADGKVELKILTRLDKPQYDSPAYKGVFTDEEKNKLAETGTLGGIK EMKDTLTGNVCKCYVSFHETTNRVITMPVDAIKIPDYIYGKRLDDKQKQILASGGELPVNDIQRKNDTMLSGVAYVDPTI RDIAFKQSDKQLKVNDTILGAKISPEQKKILENHGMVFIENMRNPKTRQLFSDDVRFSNKSNNLLIGRNAREYKPAVENQ KNDKKKETKQTARHVVSSRPQARKSSLSFS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48877; Mature: 48746
Theoretical pI: Translated: 9.62; Mature: 9.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKKKQEQQEQSQDEHVMAVLDKRTNKTAVISKMNEQDGSIEVVPPDKKNSNSFLKLDRT CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHCCCCCCEEEECCCCCCCCCEEEECCC SPLELFFTNFKNQYENPTSFSFFLVPFALLDKTLNAVIQIRKGEDPGPDGKKLVENSELN CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHCCCCCC DEGRIAKLARRYKFDEHQLPWKDLNALGLDKETLFNNHCMGEFLKGRITSTALPISKEIN CCHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHCCCHHHHHHHCCHHHHCCCCHHHCC GEKKDMGEACFMCVKGADGKVELKILTRLDKPQYDSPAYKGVFTDEEKNKLAETGTLGGI CCHHHHHHHHEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCH KEMKDTLTGNVCKCYVSFHETTNRVITMPVDAIKIPDYIYGKRLDDKQKQILASGGELPV HHHHHHHCCCEEEEEEEEECCCCEEEEECCCCEECCCHHHCCCCCHHHHHHHHCCCCCCH NDIQRKNDTMLSGVAYVDPTIRDIAFKQSDKQLKVNDTILGAKISPEQKKILENHGMVFI HHHHCCCCHHHHCEEECCCHHHHHHHCCCCCEEEECCEEECCCCCHHHHHHHHHCCEEEE ENMRNPKTRQLFSDDVRFSNKSNNLLIGRNAREYKPAVENQKNDKKKETKQTARHVVSSR ECCCCCHHHHHHHHHHCCCCCCCCEEEECCCHHHCCHHCCCCCHHHHHHHHHHHHHHHCC PQARKSSLSFS CCHHHHCCCCC >Mature Secondary Structure AKKKQEQQEQSQDEHVMAVLDKRTNKTAVISKMNEQDGSIEVVPPDKKNSNSFLKLDRT CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHCCCCCCEEEECCCCCCCCCEEEECCC SPLELFFTNFKNQYENPTSFSFFLVPFALLDKTLNAVIQIRKGEDPGPDGKKLVENSELN CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHCCCCCC DEGRIAKLARRYKFDEHQLPWKDLNALGLDKETLFNNHCMGEFLKGRITSTALPISKEIN CCHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHCCCHHHHHHHCCHHHHCCCCHHHCC GEKKDMGEACFMCVKGADGKVELKILTRLDKPQYDSPAYKGVFTDEEKNKLAETGTLGGI CCHHHHHHHHEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCH KEMKDTLTGNVCKCYVSFHETTNRVITMPVDAIKIPDYIYGKRLDDKQKQILASGGELPV HHHHHHHCCCEEEEEEEEECCCCEEEEECCCCEECCCHHHCCCCCHHHHHHHHCCCCCCH NDIQRKNDTMLSGVAYVDPTIRDIAFKQSDKQLKVNDTILGAKISPEQKKILENHGMVFI HHHHCCCCHHHHCEEECCCHHHHHHHCCCCCEEEECCEEECCCCCHHHHHHHHHCCEEEE ENMRNPKTRQLFSDDVRFSNKSNNLLIGRNAREYKPAVENQKNDKKKETKQTARHVVSSR ECCCCCHHHHHHHHHHCCCCCCCCEEEECCCHHHCCHHCCCCCHHHHHHHHHHHHHHHCC PQARKSSLSFS CCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA