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The map label for this gene is arnC [H]

Identifier: 29349972

GI number: 29349972

Start: 5984561

End: 5985511

Strand: Reverse

Name: arnC [H]

Synonym: BT_4564

Alternate gene names: 29349972

Gene position: 5985511-5984561 (Counterclockwise)

Preceding gene: 29349973

Following gene: 29349971

Centisome position: 95.61

GC content: 44.69

Gene sequence:

>951_bases
ATGAATATATCAGTTGTAGTCCCATTATTCAATGAAGAAGAGTCACTGCCCGAACTCTACGCTTGGATAGAACGGGTAAT
GAAAGCCAACGGATTCTCATTCGAAGTGATTTTCGTTAACGACGGAAGTACAGACCGTTCATGGGAGGTAATAGAAAAAC
TCAAGGCCCAATCGGACTGCGTAAAAGGCATCAAGTTCCGCCGCAATTACGGTAAATCACCCGCACTCTACTGCGGATTT
GCAGAAGCACAAGGAGATGTGGTGATCACAATGGATGCCGACTTACAGGACAGCCCGGACGAAATACCGGAGTTATACCG
GATGATTACGGAAGACGGATACGATCTGGTGTCCGGATGGAAGCAAAAAAGATATGATCCGCTATCAAAGACACTGCCGA
CAAAGTTATTCAATGCTACCGCACGTAAAGTATCAGGTATTCCAAACCTGCACGACTTCAACTGCGGTCTGAAAGCCTAT
CGCAAAGATGTCGTGAAAAACATCGAAGTATATGGCGAAATGCACCGCTATATCCCCTACCTTGCAAAGAATGCCGGATT
CCAGAAGATAGGTGAAAAGGTAGTACACCACCAGGCACGTAAATATGGCTCTACCAAATTCGGATTCAACCGTTTCTTCA
ACGGATATCTGGATTTGATTTCTCTTTGGTTCCTGTCTAAATTCGGAGTGAAGCCGATGCATTTCTTCGGATTATTAGGA
TCGCTTATGTTCTTTATCGGAATGATCTCCGTTATCATGGTAGGTGTCAGCAAACTGCACGCAATGTACAACGGTCTCCC
CTACCGGCTTGTAACCGATTCTCCTTATTTCTATCTATCGCTCACAGCGATGATTATCGGTACACAGTTATTCCTTGCCG
GATTCCTGGGAGAACTGATCTCACGTAATGCCCCCGAACGGAACAATTATCAGATAGAAAAGAAAATTTAA

Upstream 100 bases:

>100_bases
GTTTACTGGCCATTCCTACCGGATTGATGGTAATGAAGAAAGCACGACCGGAAAACAATACCCCGGCCCAATCATAATTC
GTAATTCATAATTATTAAAA

Downstream 100 bases:

>100_bases
TTCACGCCCAATAACCGATTATGAAGAATTTAATTCGTATCTTTTTAATAGTAGTAATTGTTGGTGCAGGTATAAGCATC
GGCAGTTCGTGTTCGGACGA

Product: putative glycosyltransferase

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MNISVVVPLFNEEESLPELYAWIERVMKANGFSFEVIFVNDGSTDRSWEVIEKLKAQSDCVKGIKFRRNYGKSPALYCGF
AEAQGDVVITMDADLQDSPDEIPELYRMITEDGYDLVSGWKQKRYDPLSKTLPTKLFNATARKVSGIPNLHDFNCGLKAY
RKDVVKNIEVYGEMHRYIPYLAKNAGFQKIGEKVVHHQARKYGSTKFGFNRFFNGYLDLISLWFLSKFGVKPMHFFGLLG
SLMFFIGMISVIMVGVSKLHAMYNGLPYRLVTDSPYFYLSLTAMIIGTQLFLAGFLGELISRNAPERNNYQIEKKI

Sequences:

>Translated_316_residues
MNISVVVPLFNEEESLPELYAWIERVMKANGFSFEVIFVNDGSTDRSWEVIEKLKAQSDCVKGIKFRRNYGKSPALYCGF
AEAQGDVVITMDADLQDSPDEIPELYRMITEDGYDLVSGWKQKRYDPLSKTLPTKLFNATARKVSGIPNLHDFNCGLKAY
RKDVVKNIEVYGEMHRYIPYLAKNAGFQKIGEKVVHHQARKYGSTKFGFNRFFNGYLDLISLWFLSKFGVKPMHFFGLLG
SLMFFIGMISVIMVGVSKLHAMYNGLPYRLVTDSPYFYLSLTAMIIGTQLFLAGFLGELISRNAPERNNYQIEKKI
>Mature_316_residues
MNISVVVPLFNEEESLPELYAWIERVMKANGFSFEVIFVNDGSTDRSWEVIEKLKAQSDCVKGIKFRRNYGKSPALYCGF
AEAQGDVVITMDADLQDSPDEIPELYRMITEDGYDLVSGWKQKRYDPLSKTLPTKLFNATARKVSGIPNLHDFNCGLKAY
RKDVVKNIEVYGEMHRYIPYLAKNAGFQKIGEKVVHHQARKYGSTKFGFNRFFNGYLDLISLWFLSKFGVKPMHFFGLLG
SLMFFIGMISVIMVGVSKLHAMYNGLPYRLVTDSPYFYLSLTAMIIGTQLFLAGFLGELISRNAPERNNYQIEKKI

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Homo sapiens, GI4503363, Length=232, Percent_Identity=28.8793103448276, Blast_Score=82, Evalue=7e-16,
Organism=Escherichia coli, GI1788588, Length=301, Percent_Identity=31.2292358803987, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI1788692, Length=322, Percent_Identity=30.4347826086957, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787259, Length=93, Percent_Identity=34.4086021505376, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71999402, Length=218, Percent_Identity=28.8990825688073, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24585265, Length=230, Percent_Identity=29.1304347826087, Blast_Score=84, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 36116; Mature: 36116

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNISVVVPLFNEEESLPELYAWIERVMKANGFSFEVIFVNDGSTDRSWEVIEKLKAQSDC
CCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH
VKGIKFRRNYGKSPALYCGFAEAQGDVVITMDADLQDSPDEIPELYRMITEDGYDLVSGW
HHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHH
KQKRYDPLSKTLPTKLFNATARKVSGIPNLHDFNCGLKAYRKDVVKNIEVYGEMHRYIPY
HHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LAKNAGFQKIGEKVVHHQARKYGSTKFGFNRFFNGYLDLISLWFLSKFGVKPMHFFGLLG
HHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
SLMFFIGMISVIMVGVSKLHAMYNGLPYRLVTDSPYFYLSLTAMIIGTQLFLAGFLGELI
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
SRNAPERNNYQIEKKI
HCCCCCCCCEEEECCC
>Mature Secondary Structure
MNISVVVPLFNEEESLPELYAWIERVMKANGFSFEVIFVNDGSTDRSWEVIEKLKAQSDC
CCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH
VKGIKFRRNYGKSPALYCGFAEAQGDVVITMDADLQDSPDEIPELYRMITEDGYDLVSGW
HHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHH
KQKRYDPLSKTLPTKLFNATARKVSGIPNLHDFNCGLKAYRKDVVKNIEVYGEMHRYIPY
HHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LAKNAGFQKIGEKVVHHQARKYGSTKFGFNRFFNGYLDLISLWFLSKFGVKPMHFFGLLG
HHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
SLMFFIGMISVIMVGVSKLHAMYNGLPYRLVTDSPYFYLSLTAMIIGTQLFLAGFLGELI
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
SRNAPERNNYQIEKKI
HCCCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA