Click here to switch to the map view.

The map label for this gene is rpoE [C]

Identifier: 29349869

GI number: 29349869

Start: 5871960

End: 5872532

Strand: Reverse

Name: rpoE [C]

Synonym: BT_4461

Alternate gene names: 29349869

Gene position: 5872532-5871960 (Counterclockwise)

Preceding gene: 29349870

Following gene: 29349868

Centisome position: 93.81

GC content: 42.06

Gene sequence:

>573_bases
GTGCTGTTCAATGTACGAAACATATCGAAGCTATCGGACGAGGAACTACTGACCCATTATATAAAGTCCGGGGATACGGA
ATATTTCGGTGAACTATACAACCGTTATATCCCGCTGACGTACGGACTTTGCCTGAAATATCTGCAAGATGAAGACCAAG
CGCAGGAAGCGGTGATGCAGATGTTTGAAGACCTGTTACCTAAAATCATCAATTATGAGATAAAAGCATTCAAGCCGTGG
CTCTATCGGGTGGCGAAGAACCATTGCCTGCAACTGTTACGAAAGGAAAACAAAGAAATTCCGCTGGATTATACCATTAA
TATTATGGAATCCGACGAATTTCTGCATCTATTAAGTGAAGAGGAAAGTTCGGAAGAGCAGCTGAAAGCATTGCACCACT
GTCTGGAAAAGCTGCCCGAAGAACAAAGGACCAGCATTACACGTTTCTTCCTGGAAGAAATGTCGTATGCGGATATTGTC
GAACAAACCGGATTTACTCTGAATAACGTGAAAAGCTATATCCAGAACGGAAAGCGAAACTTGAAAATTTGTATTAAGAA
ACAAGCCCTATGA

Upstream 100 bases:

>100_bases
GAAGCACAGACGTTCATGAGATTCTAAAACAGATAACGGATGATTTTGAGATGATGAAAGATAAATATCAGGTAGTAACA
GAAGACGACGAATAGAGAAA

Downstream 100 bases:

>100_bases
AACTATTGGACTACATACGAGGACTCCGCAAAGGAAAAGAGGCGCATCGACTGGAAAAAGAGTCGATGAAAGACCCTTTT
CTGGCTGACGCGATGGATGG

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma Fator; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma-70 Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MLFNVRNISKLSDEELLTHYIKSGDTEYFGELYNRYIPLTYGLCLKYLQDEDQAQEAVMQMFEDLLPKIINYEIKAFKPW
LYRVAKNHCLQLLRKENKEIPLDYTINIMESDEFLHLLSEEESSEEQLKALHHCLEKLPEEQRTSITRFFLEEMSYADIV
EQTGFTLNNVKSYIQNGKRNLKICIKKQAL

Sequences:

>Translated_190_residues
MLFNVRNISKLSDEELLTHYIKSGDTEYFGELYNRYIPLTYGLCLKYLQDEDQAQEAVMQMFEDLLPKIINYEIKAFKPW
LYRVAKNHCLQLLRKENKEIPLDYTINIMESDEFLHLLSEEESSEEQLKALHHCLEKLPEEQRTSITRFFLEEMSYADIV
EQTGFTLNNVKSYIQNGKRNLKICIKKQAL
>Mature_190_residues
MLFNVRNISKLSDEELLTHYIKSGDTEYFGELYNRYIPLTYGLCLKYLQDEDQAQEAVMQMFEDLLPKIINYEIKAFKPW
LYRVAKNHCLQLLRKENKEIPLDYTINIMESDEFLHLLSEEESSEEQLKALHHCLEKLPEEQRTSITRFFLEEMSYADIV
EQTGFTLNNVKSYIQNGKRNLKICIKKQAL

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22585; Mature: 22585

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFNVRNISKLSDEELLTHYIKSGDTEYFGELYNRYIPLTYGLCLKYLQDEDQAQEAVMQ
CCCCCCHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHH
MFEDLLPKIINYEIKAFKPWLYRVAKNHCLQLLRKENKEIPLDYTINIMESDEFLHLLSE
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHC
EESSEEQLKALHHCLEKLPEEQRTSITRFFLEEMSYADIVEQTGFTLNNVKSYIQNGKRN
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
LKICIKKQAL
HHHHEECCCC
>Mature Secondary Structure
MLFNVRNISKLSDEELLTHYIKSGDTEYFGELYNRYIPLTYGLCLKYLQDEDQAQEAVMQ
CCCCCCHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHH
MFEDLLPKIINYEIKAFKPWLYRVAKNHCLQLLRKENKEIPLDYTINIMESDEFLHLLSE
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHC
EESSEEQLKALHHCLEKLPEEQRTSITRFFLEEMSYADIVEQTGFTLNNVKSYIQNGKRN
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
LKICIKKQAL
HHHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA