| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29349858
Identifier: 29349858
GI number: 29349858
Start: 5861922
End: 5863157
Strand: Reverse
Name: 29349858
Synonym: BT_4450
Alternate gene names: NA
Gene position: 5863157-5861922 (Counterclockwise)
Preceding gene: 29349860
Following gene: 29349857
Centisome position: 93.66
GC content: 45.47
Gene sequence:
>1236_bases ATGACTCAAAACTCTATTGCGGACAACCGGATGGTCTGGCTGGATGTTGTCCGTTGCGTCGCCATGCTAATGGTAATCGG CGTACATTGCATTGACCCTTTTTACATTTCTCCTACGATGCGCGTTATTCCCGAGTACACACATTGGGCAGCCATCTACG GTTCGCTTCTCCGTCCTTCGGTTCCCTTATTCGTAATGATGACCGGATTACTGCTGCTACCGGTCAAGCAACAGCCTTTA GGCACTTTTTATAAGAAGCGCATCTTCCGCGTACTTTTCCCGTTCCTCATCTGGTCGGTACTTTACAGTATGTTCCCCTG GTTCACGGGGCTGCTGGGTCTGCCCAAAGAAATCATCGGCGACTTCTTCTGCTATACTCAGGGACATGAGTCGCAAAGCC TCATCGATTCTCTGAAAGATGTAGCCATGATACCGTTCAACTTCAGCCATAAGGAGAACCATATGTGGTATATCTATCTG CTCATCGGATTGTATCTTTATATGCCTTTCTTCTCTGCATGGGTAGAGCGGGCAAGCAATAAAACCAAACAAATTTTCCT TTTCATCTGGATTGTTTCCCTGTTTATCCCGTATATCCGCGAATATGTAGCCAATATGCTTTTCGACCGGAGCGGCTATG TATTCGGCACTGACACGTGGAACGAGTTCAGTATGTTCTACTACTTTGCCGGATTCAACGGCTACCTGCTGTTGGGACAT TATCTGAAAGAAGGCGGCAACGGAAATGCACTAAAAATTTTCTGGCCTTTTAGTGGTTCGTCAAAAGATGATCGTCTTAC TAATGATTGGAGTGTTTGGAAGACATTCCTCATTTGTGCCGTGATGTTTGCCATTGGATATTATGTGACGTACACAGGGT TCAGCACAACTGCCGCCAACCCGAATGCTACGGAGACTGAGATGGAACTTTACTTCACATTCTGTAGTCCGAACGTGTTA CTGATGACTTTGGCCATGTTCCTGATGTTGCAGAAAGTAGTGATCAATACACCTGTCATCGTCAAAGCATTAGCCAACAT GACCCAATGTGGTTTCGGAATTTATATGGTACACTACTTTGTAGTAGGTCCGTTCTTTCTGCTGATAGGTCCTTCGGAAA TTCCAATTCCGTTGCAGGTTCCGTTGATGGCAGTTTGTATTTTCCTTTGCAGCTGGGCATTCACCGCGTTACTATATAAG CTGATGCCTCACAAGGCAAAGTATATAATGGGATAA
Upstream 100 bases:
>100_bases ACTCGAAATGGTCAGAGATTGTTCTAAAATGATCAGTTTTTAATGATGGTTGCTTTCGGCGTTCGCTAACTTTGCCTACA TAACTTAAAAACAAAATATC
Downstream 100 bases:
>100_bases AGAAACTAAAAAAGATATACGATGAAAATTAAAGTTGGTCTTATTGGATTCGGTCGAATGGGACGATTTTATTTGAAAGA GATGCAGAAAAGCGGAAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 411; Mature: 410
Protein sequence:
>411_residues MTQNSIADNRMVWLDVVRCVAMLMVIGVHCIDPFYISPTMRVIPEYTHWAAIYGSLLRPSVPLFVMMTGLLLLPVKQQPL GTFYKKRIFRVLFPFLIWSVLYSMFPWFTGLLGLPKEIIGDFFCYTQGHESQSLIDSLKDVAMIPFNFSHKENHMWYIYL LIGLYLYMPFFSAWVERASNKTKQIFLFIWIVSLFIPYIREYVANMLFDRSGYVFGTDTWNEFSMFYYFAGFNGYLLLGH YLKEGGNGNALKIFWPFSGSSKDDRLTNDWSVWKTFLICAVMFAIGYYVTYTGFSTTAANPNATETEMELYFTFCSPNVL LMTLAMFLMLQKVVINTPVIVKALANMTQCGFGIYMVHYFVVGPFFLLIGPSEIPIPLQVPLMAVCIFLCSWAFTALLYK LMPHKAKYIMG
Sequences:
>Translated_411_residues MTQNSIADNRMVWLDVVRCVAMLMVIGVHCIDPFYISPTMRVIPEYTHWAAIYGSLLRPSVPLFVMMTGLLLLPVKQQPL GTFYKKRIFRVLFPFLIWSVLYSMFPWFTGLLGLPKEIIGDFFCYTQGHESQSLIDSLKDVAMIPFNFSHKENHMWYIYL LIGLYLYMPFFSAWVERASNKTKQIFLFIWIVSLFIPYIREYVANMLFDRSGYVFGTDTWNEFSMFYYFAGFNGYLLLGH YLKEGGNGNALKIFWPFSGSSKDDRLTNDWSVWKTFLICAVMFAIGYYVTYTGFSTTAANPNATETEMELYFTFCSPNVL LMTLAMFLMLQKVVINTPVIVKALANMTQCGFGIYMVHYFVVGPFFLLIGPSEIPIPLQVPLMAVCIFLCSWAFTALLYK LMPHKAKYIMG >Mature_410_residues TQNSIADNRMVWLDVVRCVAMLMVIGVHCIDPFYISPTMRVIPEYTHWAAIYGSLLRPSVPLFVMMTGLLLLPVKQQPLG TFYKKRIFRVLFPFLIWSVLYSMFPWFTGLLGLPKEIIGDFFCYTQGHESQSLIDSLKDVAMIPFNFSHKENHMWYIYLL IGLYLYMPFFSAWVERASNKTKQIFLFIWIVSLFIPYIREYVANMLFDRSGYVFGTDTWNEFSMFYYFAGFNGYLLLGHY LKEGGNGNALKIFWPFSGSSKDDRLTNDWSVWKTFLICAVMFAIGYYVTYTGFSTTAANPNATETEMELYFTFCSPNVLL MTLAMFLMLQKVVINTPVIVKALANMTQCGFGIYMVHYFVVGPFFLLIGPSEIPIPLQVPLMAVCIFLCSWAFTALLYKL MPHKAKYIMG
Specific function: Unknown
COG id: COG3274
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47492; Mature: 47361
Theoretical pI: Translated: 8.34; Mature: 8.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 5.6 %Met (Translated Protein) 7.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 5.4 %Met (Mature Protein) 7.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQNSIADNRMVWLDVVRCVAMLMVIGVHCIDPFYISPTMRVIPEYTHWAAIYGSLLRPS CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHCCCHHHHHHHHHHHHCCC VPLFVMMTGLLLLPVKQQPLGTFYKKRIFRVLFPFLIWSVLYSMFPWFTGLLGLPKEIIG CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH DFFCYTQGHESQSLIDSLKDVAMIPFNFSHKENHMWYIYLLIGLYLYMPFFSAWVERASN HHHHHCCCCCHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC KTKQIFLFIWIVSLFIPYIREYVANMLFDRSGYVFGTDTWNEFSMFYYFAGFNGYLLLGH CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHEEEEEEECCCCHHHHHH YLKEGGNGNALKIFWPFSGSSKDDRLTNDWSVWKTFLICAVMFAIGYYVTYTGFSTTAAN HHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCC PNATETEMELYFTFCSPNVLLMTLAMFLMLQKVVINTPVIVKALANMTQCGFGIYMVHYF CCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHH VVGPFFLLIGPSEIPIPLQVPLMAVCIFLCSWAFTALLYKLMPHKAKYIMG HHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCC >Mature Secondary Structure TQNSIADNRMVWLDVVRCVAMLMVIGVHCIDPFYISPTMRVIPEYTHWAAIYGSLLRPS CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHCCCHHHHHHHHHHHHCCC VPLFVMMTGLLLLPVKQQPLGTFYKKRIFRVLFPFLIWSVLYSMFPWFTGLLGLPKEIIG CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH DFFCYTQGHESQSLIDSLKDVAMIPFNFSHKENHMWYIYLLIGLYLYMPFFSAWVERASN HHHHHCCCCCHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC KTKQIFLFIWIVSLFIPYIREYVANMLFDRSGYVFGTDTWNEFSMFYYFAGFNGYLLLGH CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHEEEEEEECCCCHHHHHH YLKEGGNGNALKIFWPFSGSSKDDRLTNDWSVWKTFLICAVMFAIGYYVTYTGFSTTAAN HHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCC PNATETEMELYFTFCSPNVLLMTLAMFLMLQKVVINTPVIVKALANMTQCGFGIYMVHYF CCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHH VVGPFFLLIGPSEIPIPLQVPLMAVCIFLCSWAFTALLYKLMPHKAKYIMG HHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA