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The map label for this gene is yrbE [H]

Identifier: 29349857

GI number: 29349857

Start: 5860833

End: 5861900

Strand: Reverse

Name: yrbE [H]

Synonym: BT_4449

Alternate gene names: 29349857

Gene position: 5861900-5860833 (Counterclockwise)

Preceding gene: 29349858

Following gene: 29349856

Centisome position: 93.64

GC content: 46.44

Gene sequence:

>1068_bases
ATGAAAATTAAAGTTGGTCTTATTGGATTCGGTCGAATGGGACGATTTTATTTGAAAGAGATGCAGAAAAGCGGAAGATG
GGATGTCGCATACATTTGCGACATCAATCCCGACTGCCGCGAACTGGCAAAGCAATTGTCGCCCGAATCGAAAATACTCG
AAAATGAACAGGAAATGTTCGATGATGAAAGTGTGCAGGTGGTCGGACTCTTCGCATTGGCAGACTCAAGGCTTGACCGG
ATTGAAAAGGCTATCAAATACGGGAAACATATCATCTCCGAGAAACCGGTATCAGACACCATAGACAAAGAATGGAAAGT
AGTAGACATCACCGAGAAAGCCAGTTGTTTTTCTACCGTCAATTTGTATCTCCGCAACGCCTGGTATCATCAGACTATCA
AACAGTTTATTGATCAGGGCGAGATCGGCGAACTTGCCATTCTGCGAATCTGCCACATGACTCCGGGCCTCGCACCAGGC
GAAGGTCACGAATATGAAGGTCCCGCCTTCCATGACTGCGGAATGCATTATGTAGACATTGCACGCTGGTATGCCGGATG
CGAATACAAGACATGGCATGCGCAGGGCGTCAATATGTGGAGTTATAAAGATCCTTGGTGGGTACAGTGTCACGGGACAT
TCCAGAACGGCGTTGTTTTTGATATCACTCAGGGGTTTGTGTACGGACAATTGTCCAAAGATCAGACTCATAACTCATAC
GTGGACATCATCGGTACCAAAGGTATCGCCCGAATGACGCATGATTTCAAAACAGCTGTCGTCGATCTGCGTGGAGTGAC
GCAGACCCATCATATAGAGAAGCCGTTCGGTGGAAAAAACATCGATGTGCTGTGCGACTTATTCGCCGACTCCATAGAGA
CCGGAATCAGAAATCCCCAACTGCCGCTCATACGCGATTCAGCCATCGCATCGGAATATGCATGGACCTTTTTGCACGAT
GCCTATACACATGATTTGCCTGCTATCGGTGAACTGGAGACACTTGAGCAAATATGGGAAAGAAGAAGAAATATGAAAAA
TGGATACGGATTACTTCAAAAGCCATAA

Upstream 100 bases:

>100_bases
TATTTTCCTTTGCAGCTGGGCATTCACCGCGTTACTATATAAGCTGATGCCTCACAAGGCAAAGTATATAATGGGATAAA
GAAACTAAAAAAGATATACG

Downstream 100 bases:

>100_bases
TAAATATTCAATAAAATAAGAAACTGAAATCAATTATTAACTCTTAAAAATAAAACCATGTCAGACTTTTCAAGAAGAAA
ATTTCTTAAAACGGGGGCTG

Product: putative dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 355

Protein sequence:

>355_residues
MKIKVGLIGFGRMGRFYLKEMQKSGRWDVAYICDINPDCRELAKQLSPESKILENEQEMFDDESVQVVGLFALADSRLDR
IEKAIKYGKHIISEKPVSDTIDKEWKVVDITEKASCFSTVNLYLRNAWYHQTIKQFIDQGEIGELAILRICHMTPGLAPG
EGHEYEGPAFHDCGMHYVDIARWYAGCEYKTWHAQGVNMWSYKDPWWVQCHGTFQNGVVFDITQGFVYGQLSKDQTHNSY
VDIIGTKGIARMTHDFKTAVVDLRGVTQTHHIEKPFGGKNIDVLCDLFADSIETGIRNPQLPLIRDSAIASEYAWTFLHD
AYTHDLPAIGELETLEQIWERRRNMKNGYGLLQKP

Sequences:

>Translated_355_residues
MKIKVGLIGFGRMGRFYLKEMQKSGRWDVAYICDINPDCRELAKQLSPESKILENEQEMFDDESVQVVGLFALADSRLDR
IEKAIKYGKHIISEKPVSDTIDKEWKVVDITEKASCFSTVNLYLRNAWYHQTIKQFIDQGEIGELAILRICHMTPGLAPG
EGHEYEGPAFHDCGMHYVDIARWYAGCEYKTWHAQGVNMWSYKDPWWVQCHGTFQNGVVFDITQGFVYGQLSKDQTHNSY
VDIIGTKGIARMTHDFKTAVVDLRGVTQTHHIEKPFGGKNIDVLCDLFADSIETGIRNPQLPLIRDSAIASEYAWTFLHD
AYTHDLPAIGELETLEQIWERRRNMKNGYGLLQKP
>Mature_355_residues
MKIKVGLIGFGRMGRFYLKEMQKSGRWDVAYICDINPDCRELAKQLSPESKILENEQEMFDDESVQVVGLFALADSRLDR
IEKAIKYGKHIISEKPVSDTIDKEWKVVDITEKASCFSTVNLYLRNAWYHQTIKQFIDQGEIGELAILRICHMTPGLAPG
EGHEYEGPAFHDCGMHYVDIARWYAGCEYKTWHAQGVNMWSYKDPWWVQCHGTFQNGVVFDITQGFVYGQLSKDQTHNSY
VDIIGTKGIARMTHDFKTAVVDLRGVTQTHHIEKPFGGKNIDVLCDLFADSIETGIRNPQLPLIRDSAIASEYAWTFLHD
AYTHDLPAIGELETLEQIWERRRNMKNGYGLLQKP

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 40703; Mature: 40703

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKVGLIGFGRMGRFYLKEMQKSGRWDVAYICDINPDCRELAKQLSPESKILENEQEMF
CEEEEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHCHHHHC
DDESVQVVGLFALADSRLDRIEKAIKYGKHIISEKPVSDTIDKEWKVVDITEKASCFSTV
CCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHH
NLYLRNAWYHQTIKQFIDQGEIGELAILRICHMTPGLAPGEGHEYEGPAFHDCGMHYVDI
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCHHHHH
ARWYAGCEYKTWHAQGVNMWSYKDPWWVQCHGTFQNGVVFDITQGFVYGQLSKDQTHNSY
HHHHHCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCEEEEEECCEEEEECCCCCCCCCE
VDIIGTKGIARMTHDFKTAVVDLRGVTQTHHIEKPFGGKNIDVLCDLFADSIETGIRNPQ
EEEEECCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
LPLIRDSAIASEYAWTFLHDAYTHDLPAIGELETLEQIWERRRNMKNGYGLLQKP
CCCEECHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKIKVGLIGFGRMGRFYLKEMQKSGRWDVAYICDINPDCRELAKQLSPESKILENEQEMF
CEEEEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHCHHHHC
DDESVQVVGLFALADSRLDRIEKAIKYGKHIISEKPVSDTIDKEWKVVDITEKASCFSTV
CCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHH
NLYLRNAWYHQTIKQFIDQGEIGELAILRICHMTPGLAPGEGHEYEGPAFHDCGMHYVDI
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCHHHHH
ARWYAGCEYKTWHAQGVNMWSYKDPWWVQCHGTFQNGVVFDITQGFVYGQLSKDQTHNSY
HHHHHCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCEEEEEECCEEEEECCCCCCCCCE
VDIIGTKGIARMTHDFKTAVVDLRGVTQTHHIEKPFGGKNIDVLCDLFADSIETGIRNPQ
EEEEECCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
LPLIRDSAIASEYAWTFLHDAYTHDLPAIGELETLEQIWERRRNMKNGYGLLQKP
CCCEECHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 9025289 [H]