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The map label for this gene is mmsR [H]

Identifier: 29349804

GI number: 29349804

Start: 5790293

End: 5791180

Strand: Reverse

Name: mmsR [H]

Synonym: BT_4396

Alternate gene names: 29349804

Gene position: 5791180-5790293 (Counterclockwise)

Preceding gene: 29349807

Following gene: 29349802

Centisome position: 92.51

GC content: 43.24

Gene sequence:

>888_bases
ATGGTAAAACTAAAAGATGGATTTACCGGGGAAAGAGCCTTAGTATTGCCCCGCATCATCGTTGATAAGATGGAAGAGGA
CCCGCTGACCTCCATGCTGCATATCACTGACATCGGATATTATCCCAAAGCCAAGCATCATTTTCGGGAACGGAAAGAGC
CCATCAATCAATATGTCTTCATCTATTGTATTGATGGTGCCGGATCTTACCGGATCGGAGACCAGGAATATACCGTCTCC
GCCAATCAGTATTTTATTCTTCCGGCAGGAGTCCCGCATTCTTATGCTTCCAACAAATCGACGCCATGGACTATTTACTG
GATTCACTTCAAAGGTATTCTTGCTCCGTTCTATGCCAAAGACGCCAACCGTCCGATGGATATTCAGTCCGAACAACACT
CCCGCATCAGTACGCGGATCAACCTGTTTGAAGAGATATTCAATACACTCAAAAATGGTTATAGCAACGAGAACCTGCGT
TATGCGTTTTCTATGTTTCACTTTTATTTGGGAACGTTACGCTATGTCCAGCAATATCGTAATGCAGGCACCAATGAGGC
AGAAGACGAGGGAATAGTGAACGTTGCCATCCACTACATGAAAGAGAATATGGAGAAACATCTGAGTCTGGAAGAGATAT
CAACACAAATCGGATATTCTCCGTCGCACTTCTCCATGTTGTTCAAAAAGCAAACGGGACACAGTCCGCTTACTTACTTT
AATCTGCTAAAGATGCAGCAGGCCTGCCTGTTGCTGGATACCACCGATATGAAGATAAATCAGATATGCTATAAAATAGG
TATTGAAGATACTTATTATTTTTCCCGCCTATTCAGTAAGATCATGGGAATGTCACCGCGGGAATATCGTAAATCAAAAA
AAGGCTGA

Upstream 100 bases:

>100_bases
GAATTTCATTTTATAAAGATGGACAATCTTATTTTTAATGTATTATTTGACAGATCGCATACATTATTATATATTTGCGC
AGAATAACCAATTATGTACT

Downstream 100 bases:

>100_bases
CTAAAAAGTCGGTGGTAACTTCCAACTCTCCTCCTTCGGGAAGGAGGGGAATTGTGGGTAGTTCAGACTTTTTAGTCAGC
CTATATAATCATTCTTATTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MVKLKDGFTGERALVLPRIIVDKMEEDPLTSMLHITDIGYYPKAKHHFRERKEPINQYVFIYCIDGAGSYRIGDQEYTVS
ANQYFILPAGVPHSYASNKSTPWTIYWIHFKGILAPFYAKDANRPMDIQSEQHSRISTRINLFEEIFNTLKNGYSNENLR
YAFSMFHFYLGTLRYVQQYRNAGTNEAEDEGIVNVAIHYMKENMEKHLSLEEISTQIGYSPSHFSMLFKKQTGHSPLTYF
NLLKMQQACLLLDTTDMKINQICYKIGIEDTYYFSRLFSKIMGMSPREYRKSKKG

Sequences:

>Translated_295_residues
MVKLKDGFTGERALVLPRIIVDKMEEDPLTSMLHITDIGYYPKAKHHFRERKEPINQYVFIYCIDGAGSYRIGDQEYTVS
ANQYFILPAGVPHSYASNKSTPWTIYWIHFKGILAPFYAKDANRPMDIQSEQHSRISTRINLFEEIFNTLKNGYSNENLR
YAFSMFHFYLGTLRYVQQYRNAGTNEAEDEGIVNVAIHYMKENMEKHLSLEEISTQIGYSPSHFSMLFKKQTGHSPLTYF
NLLKMQQACLLLDTTDMKINQICYKIGIEDTYYFSRLFSKIMGMSPREYRKSKKG
>Mature_295_residues
MVKLKDGFTGERALVLPRIIVDKMEEDPLTSMLHITDIGYYPKAKHHFRERKEPINQYVFIYCIDGAGSYRIGDQEYTVS
ANQYFILPAGVPHSYASNKSTPWTIYWIHFKGILAPFYAKDANRPMDIQSEQHSRISTRINLFEEIFNTLKNGYSNENLR
YAFSMFHFYLGTLRYVQQYRNAGTNEAEDEGIVNVAIHYMKENMEKHLSLEEISTQIGYSPSHFSMLFKKQTGHSPLTYF
NLLKMQQACLLLDTTDMKINQICYKIGIEDTYYFSRLFSKIMGMSPREYRKSKKG

Specific function: Regulatory protein for the mmsAB operon. Activates the transcription of the mmsAB genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=249, Percent_Identity=24.8995983935743, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787987, Length=248, Percent_Identity=23.3870967741935, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34477; Mature: 34477

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKLKDGFTGERALVLPRIIVDKMEEDPLTSMLHITDIGYYPKAKHHFRERKEPINQYVF
CEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEE
IYCIDGAGSYRIGDQEYTVSANQYFILPAGVPHSYASNKSTPWTIYWIHFKGILAPFYAK
EEEECCCCCEEECCCEEEEECCEEEEEECCCCCHHCCCCCCCEEEEEEEECCHHHHHHHC
DANRPMDIQSEQHSRISTRINLFEEIFNTLKNGYSNENLRYAFSMFHFYLGTLRYVQQYR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
NAGTNEAEDEGIVNVAIHYMKENMEKHLSLEEISTQIGYSPSHFSMLFKKQTGHSPLTYF
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHH
NLLKMQQACLLLDTTDMKINQICYKIGIEDTYYFSRLFSKIMGMSPREYRKSKKG
HHHHHHHHHHEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHCCCC
>Mature Secondary Structure
MVKLKDGFTGERALVLPRIIVDKMEEDPLTSMLHITDIGYYPKAKHHFRERKEPINQYVF
CEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEE
IYCIDGAGSYRIGDQEYTVSANQYFILPAGVPHSYASNKSTPWTIYWIHFKGILAPFYAK
EEEECCCCCEEECCCEEEEECCEEEEEECCCCCHHCCCCCCCEEEEEEEECCHHHHHHHC
DANRPMDIQSEQHSRISTRINLFEEIFNTLKNGYSNENLRYAFSMFHFYLGTLRYVQQYR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
NAGTNEAEDEGIVNVAIHYMKENMEKHLSLEEISTQIGYSPSHFSMLFKKQTGHSPLTYF
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHH
NLLKMQQACLLLDTTDMKINQICYKIGIEDTYYFSRLFSKIMGMSPREYRKSKKG
HHHHHHHHHHEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1339433; 10984043 [H]