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The map label for this gene is rpoE [C]

Identifier: 29349763

GI number: 29349763

Start: 5739541

End: 5740116

Strand: Reverse

Name: rpoE [C]

Synonym: BT_4355

Alternate gene names: 29349763

Gene position: 5740116-5739541 (Counterclockwise)

Preceding gene: 29349768

Following gene: 29349759

Centisome position: 91.69

GC content: 39.06

Gene sequence:

>576_bases
ATGGAAGAACTACGCATAAAGAGGAATGATCTTCAATTATCTGAAATACAGCGTGGAGGCCTAAAAGCCTTTGAAACGCT
ATTCAGGCAATACTATGCAGTGCTATGTGCCTATGGTCATAAATACGTTGACTTCCACGATGCAGAAGAAATAGTGCAAG
ACTCCCTTCTATGGATATGGGAAAACCGGGAAAACTTAATCATTGAATCATCATTAAGTTCTTATCTCTTTAAAATGGTA
CATCACAAGGCTTTAAATAAGCTTGCACACATTGATGCCATCAAACGTGCTGATACGCGTTTCTATGAAGAAATGCAAGA
GATGATACATGATATGGACTTTTATCAGATTAAAGAGCTAACCAAACGAATTGAAGACGCGGTTGCTGCATTGCCGGAAA
GTTACCGGCAAGCATTTGTCATGCATCGTTTCCGGGATATGAGCTACAAAGAAATTGCAGAAACATTGGAAGTGTCTCCA
AAGACTGTAGATTATCGTATTCAGCAAGCACTCAAGCAATTACGCATCGATTTAAAAGATTATCTGCCATTGCTGCTTCC
TTTACTGTTTCCTTAA

Upstream 100 bases:

>100_bases
GGCTAAACCAGGACATTCCTAAACGAAAACCTTATTTTTTTCAGAAAATCTTTATTTTATTATAAAAAAGCTATATTTGC
AGCAAATAACTATTTAATAA

Downstream 100 bases:

>100_bases
TATAAGTGACTCCTTCCAATAAATTGGATTCGTACCTATTAAACCTATACCATCCTTCAACTAAATAGAGAAAAACGGTT
TCTTTTTAGGTAAAGTTCTT

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma-H Factor; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-E Factor Protein; Sigma-70 Region 2 Subfamily; ECF-Type RNA Polymerase; ECF Sigma Factor; Xin-Antitoxin System Toxin Component HipA Family; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma-W Factor; ECF Subfamily RNA Polymerase Sigma Factor; ECF-Type RNA Polymerase Sigma Factor

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MEELRIKRNDLQLSEIQRGGLKAFETLFRQYYAVLCAYGHKYVDFHDAEEIVQDSLLWIWENRENLIIESSLSSYLFKMV
HHKALNKLAHIDAIKRADTRFYEEMQEMIHDMDFYQIKELTKRIEDAVAALPESYRQAFVMHRFRDMSYKEIAETLEVSP
KTVDYRIQQALKQLRIDLKDYLPLLLPLLFP

Sequences:

>Translated_191_residues
MEELRIKRNDLQLSEIQRGGLKAFETLFRQYYAVLCAYGHKYVDFHDAEEIVQDSLLWIWENRENLIIESSLSSYLFKMV
HHKALNKLAHIDAIKRADTRFYEEMQEMIHDMDFYQIKELTKRIEDAVAALPESYRQAFVMHRFRDMSYKEIAETLEVSP
KTVDYRIQQALKQLRIDLKDYLPLLLPLLFP
>Mature_191_residues
MEELRIKRNDLQLSEIQRGGLKAFETLFRQYYAVLCAYGHKYVDFHDAEEIVQDSLLWIWENRENLIIESSLSSYLFKMV
HHKALNKLAHIDAIKRADTRFYEEMQEMIHDMDFYQIKELTKRIEDAVAALPESYRQAFVMHRFRDMSYKEIAETLEVSP
KTVDYRIQQALKQLRIDLKDYLPLLLPLLFP

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22894; Mature: 22894

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEELRIKRNDLQLSEIQRGGLKAFETLFRQYYAVLCAYGHKYVDFHDAEEIVQDSLLWIW
CCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHEE
ENRENLIIESSLSSYLFKMVHHKALNKLAHIDAIKRADTRFYEEMQEMIHDMDFYQIKEL
ECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
TKRIEDAVAALPESYRQAFVMHRFRDMSYKEIAETLEVSPKTVDYRIQQALKQLRIDLKD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
YLPLLLPLLFP
HHHHHHHHHCC
>Mature Secondary Structure
MEELRIKRNDLQLSEIQRGGLKAFETLFRQYYAVLCAYGHKYVDFHDAEEIVQDSLLWIW
CCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHEE
ENRENLIIESSLSSYLFKMVHHKALNKLAHIDAIKRADTRFYEEMQEMIHDMDFYQIKEL
ECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
TKRIEDAVAALPESYRQAFVMHRFRDMSYKEIAETLEVSPKTVDYRIQQALKQLRIDLKD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
YLPLLLPLLFP
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA