Click here to switch to the map view.

The map label for this gene is xynD [H]

Identifier: 29349083

GI number: 29349083

Start: 4768720

End: 4769721

Strand: Reverse

Name: xynD [H]

Synonym: BT_3675

Alternate gene names: 29349083

Gene position: 4769721-4768720 (Counterclockwise)

Preceding gene: 29349092

Following gene: 29349082

Centisome position: 76.19

GC content: 46.11

Gene sequence:

>1002_bases
ATGAAGCATTTATTTACCAGAATCTTTCTATTCCACTTATTACTCATCGGAACAGTACAAGTAACGGCACAGAATAAGAA
ATCCGGCAATCCTATTCTACCGGGGTTCCATGCCGACCCGGAAGTACTGTATTCTCATCAGACAAAACGCTATTATATTT
ACCCCACCAGTGACGGATTTCCGGGATGGGGCGGAAGTTATTTTAAGGTCTTTTCATCGAAGAATTTAAAAACATGGAAA
GAAGAGACTGTGATTCTGGAGATGGGCAAAAATGTGTCTTGGGCAAACGGAAACGCATGGGCTCCCTGCATCGAAGAAAA
GAAGATAGACGGGAAGTATAAATACTTCTTTTATTATAGTGCCAACCCAACGACCAACAAAGGCAAGCAAATAGGAGTTG
CCGTAGCCGACTCCCCCACCGGACCTTTCACAGATCTGGGCAAACCTATCATCACCTCTTCTCCCACAGGACGGGGACAG
CAGATTGATGTGGATGTATTCACCGACCCCGTATCCGGCAAAAGCTACCTCTATTGGGGTAACGGCTACATGGCAGGAGC
CGAGCTCAACGACGACATGCTGTCCATCAAAGAAGAGACAACGGTAGTATTAACTCCCAAAGGAGGGACTTTGCAGACTT
ACGCATACCGTGAAGCTCCTTACGTTATTTATAGAAAAGGAATTTACTACTTCTTCTGGTCTGTAGACGACACCGGCTCA
CCCAACTACCACGTAGTTTATGGTACCGCCCAATCACCGCTAGGTCCGATCGAAGTAGCCAAAGAACCAATAGTACTCAT
CCAAAATCCAAAAGAAGAGATCTACGGACCTGCCCACAACTCTATCCTGCAAGTACCGGGAAAAGACAAATGGTATATCG
TATACCACCGTATCAACAAGAACCATCTGAATGACGGACCGGGCTGGCACCGCGAAGTATGTATTGACCGGATGGAATTC
AATCCGGACGGAACAATCAAACAGGTAATCCCTACACCATAA

Upstream 100 bases:

>100_bases
GATAATTACCCTCCTTTGACAGATATGTAACCTTTTTATTTAGGTGGATCCCCTATCTTTGTCGTACTTATAATATAATA
AAAATCTAACTATAAATATC

Downstream 100 bases:

>100_bases
CACCGCAACAGAGATTCATACTAAAATAAATACTAAGATGAAAAACATTCTGACTGCGACATTCCTGACCTGCATCTGCA
TAACAGGCAGCGCGCAAATA

Product: endo-1,4-beta-xylanase D

Products: NA

Alternate protein names: AXH; AXH-m2,3; AXH-m23; Alpha-L-arabinofuranosidase; AF [H]

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MKHLFTRIFLFHLLLIGTVQVTAQNKKSGNPILPGFHADPEVLYSHQTKRYYIYPTSDGFPGWGGSYFKVFSSKNLKTWK
EETVILEMGKNVSWANGNAWAPCIEEKKIDGKYKYFFYYSANPTTNKGKQIGVAVADSPTGPFTDLGKPIITSSPTGRGQ
QIDVDVFTDPVSGKSYLYWGNGYMAGAELNDDMLSIKEETTVVLTPKGGTLQTYAYREAPYVIYRKGIYYFFWSVDDTGS
PNYHVVYGTAQSPLGPIEVAKEPIVLIQNPKEEIYGPAHNSILQVPGKDKWYIVYHRINKNHLNDGPGWHREVCIDRMEF
NPDGTIKQVIPTP

Sequences:

>Translated_333_residues
MKHLFTRIFLFHLLLIGTVQVTAQNKKSGNPILPGFHADPEVLYSHQTKRYYIYPTSDGFPGWGGSYFKVFSSKNLKTWK
EETVILEMGKNVSWANGNAWAPCIEEKKIDGKYKYFFYYSANPTTNKGKQIGVAVADSPTGPFTDLGKPIITSSPTGRGQ
QIDVDVFTDPVSGKSYLYWGNGYMAGAELNDDMLSIKEETTVVLTPKGGTLQTYAYREAPYVIYRKGIYYFFWSVDDTGS
PNYHVVYGTAQSPLGPIEVAKEPIVLIQNPKEEIYGPAHNSILQVPGKDKWYIVYHRINKNHLNDGPGWHREVCIDRMEF
NPDGTIKQVIPTP
>Mature_333_residues
MKHLFTRIFLFHLLLIGTVQVTAQNKKSGNPILPGFHADPEVLYSHQTKRYYIYPTSDGFPGWGGSYFKVFSSKNLKTWK
EETVILEMGKNVSWANGNAWAPCIEEKKIDGKYKYFFYYSANPTTNKGKQIGVAVADSPTGPFTDLGKPIITSSPTGRGQ
QIDVDVFTDPVSGKSYLYWGNGYMAGAELNDDMLSIKEETTVVLTPKGGTLQTYAYREAPYVIYRKGIYYFFWSVDDTGS
PNYHVVYGTAQSPLGPIEVAKEPIVLIQNPKEEIYGPAHNSILQVPGKDKWYIVYHRINKNHLNDGPGWHREVCIDRMEF
NPDGTIKQVIPTP

Specific function: Cleaves arabinose units from O-2- or O-3-monosubstituted xylose residues, thereby assisting in arabinoxylan (AX) and short- chain arabinoxylo-oligosaccharide (AXOS) degradation. Preferres wheat flour xylan over oat spelt xylan as substrate. Does not displ

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBM6 (carbohydrate binding type-6) domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005084
- InterPro:   IPR006584
- InterPro:   IPR008979
- InterPro:   IPR006710 [H]

Pfam domain/function: PF03422 CBM_6; PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 37558; Mature: 37558

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHLFTRIFLFHLLLIGTVQVTAQNKKSGNPILPGFHADPEVLYSHQTKRYYIYPTSDGF
CHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCHHHEEECCCCEEEEEECCCCC
PGWGGSYFKVFSSKNLKTWKEETVILEMGKNVSWANGNAWAPCIEEKKIDGKYKYFFYYS
CCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEECCCCEECCCCCCCCCCCEEEEEEEEE
ANPTTNKGKQIGVAVADSPTGPFTDLGKPIITSSPTGRGQQIDVDVFTDPVSGKSYLYWG
CCCCCCCCCEEEEEEECCCCCCHHHCCCCEEECCCCCCCCEEEEEEEECCCCCCEEEEEC
NGYMAGAELNDDMLSIKEETTVVLTPKGGTLQTYAYREAPYVIYRKGIYYFFWSVDDTGS
CCEEECCCCCCCCEEEECCEEEEEECCCCEEEEEEECCCCEEEEECCEEEEEEEECCCCC
PNYHVVYGTAQSPLGPIEVAKEPIVLIQNPKEEIYGPAHNSILQVPGKDKWYIVYHRINK
CCEEEEEECCCCCCCHHHHCCCCEEEEECCHHHHCCCCCCCEEECCCCCCEEEEEEECCC
NHLNDGPGWHREVCIDRMEFNPDGTIKQVIPTP
CCCCCCCCCCHHHHEEEEEECCCCCEEECCCCC
>Mature Secondary Structure
MKHLFTRIFLFHLLLIGTVQVTAQNKKSGNPILPGFHADPEVLYSHQTKRYYIYPTSDGF
CHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCHHHEEECCCCEEEEEECCCCC
PGWGGSYFKVFSSKNLKTWKEETVILEMGKNVSWANGNAWAPCIEEKKIDGKYKYFFYYS
CCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEECCCCEECCCCCCCCCCCEEEEEEEEE
ANPTTNKGKQIGVAVADSPTGPFTDLGKPIITSSPTGRGQQIDVDVFTDPVSGKSYLYWG
CCCCCCCCCEEEEEEECCCCCCHHHCCCCEEECCCCCCCCEEEEEEEECCCCCCEEEEEC
NGYMAGAELNDDMLSIKEETTVVLTPKGGTLQTYAYREAPYVIYRKGIYYFFWSVDDTGS
CCEEECCCCCCCCEEEECCEEEEEECCCCEEEEEEECCCCEEEEECCEEEEEEEECCCCC
PNYHVVYGTAQSPLGPIEVAKEPIVLIQNPKEEIYGPAHNSILQVPGKDKWYIVYHRINK
CCEEEEEECCCCCCCHHHHCCCCEEEEECCHHHHCCCCCCCEEECCCCCCEEEEEEECCC
NHLNDGPGWHREVCIDRMEFNPDGTIKQVIPTP
CCCCCCCCCCHHHHEEEEEECCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938968 [H]