| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
Click here to switch to the map view.
The map label for this gene is 29349040
Identifier: 29349040
GI number: 29349040
Start: 4704951
End: 4706186
Strand: Reverse
Name: 29349040
Synonym: BT_3632
Alternate gene names: NA
Gene position: 4706186-4704951 (Counterclockwise)
Preceding gene: 29349041
Following gene: 29349039
Centisome position: 75.17
GC content: 50.57
Gene sequence:
>1236_bases ATGAAACAACAGTCAATCTATATCATACTGCTTTTCGTCACATCCTTACTCGGAGGATGTACGGACCTCGACAAAGGCAA TCCTTACGAAGACCAGCTGCACACCTTGCAGGTGACTGCCGTCTATCCGGACGATTATGCGGAATACCTTCGGGAAGGCA TCACCGTCCAAATCGAAGACATCGCCCGCGGCAACTCCTACAAGACGGTAACCGACCAGAACGGTACAGCGCAATTCGCC CTGACCAACGGCATATACCGCATACAAATCAGCGATAAAGCCGATCAGCATATATTTAACGGACTGGCAGACAAGGTAAA ACTCGTAAACGGAGATATCACACTCAACGTTCCGCTTACACACTCCAAAGCCGGTGCCATCATTATCAAGGAAATCTATT GCGGAGGATGTACCAAGCTGCCGCAGGAAGGTACTTATCAGGCTGATAAATACATTATCCTGCACAACAATGATTCCCAG ACGCAGTATCTCGACCATTTGTGTTTAGGTACGCTCGATCCTTACAACTCCCAGTCCACCAACGTATGGGTGACGCAGGA CGAAGCAACCGGAGCAACCATTTTCCCCGATTTCGCTCCTATCGTCCAGTGCATCTGGCAATTCGGCGGTAACGGCACTT CCTTCCCGCTGGCACCCGGTGCCGATGCGGTCATCGCCGTCAACGGAGCCATCGATCATGCCGCGCAATACCCGCTGTCG GTCAATCTGAACAAACCGGGATATTTTGCCTGCTACAACAATGTTTATTACTGGAATACGATGTATCATCCTGCTCCGGG CGACCAGATCAGCCGCGACCATTATCTGGACGTGGTCATCAAACTGGGACAGGCGAATGCCTATACATTCTCTATATTTT CTCCCGCCACTGTCATCTTCAAGGCTCAGGACACTACGATACAGGAGTATGTACAGCAAACGGGCAGTGTGATACAAAAG CCCGGCAGCACGGTGGATCAGGTCATCAAGATTCCGCTCGACTGGGTGATTGACGGGGTAGAGGTGTACTATGGCGGTTC GTCGAGCAACAAAAAACGCATTTCGCCTTCCATCGATGCCGGATATGTCAGTCAAAGTGCACTGTATGACGGACGCAGCC TGCACCGTCGGGTAGACGAGGAAGCATCGAAGGAGGCCGGTTATGAAATACTGGAAGATACGAACAACTCTTCCGCCGAT TTTTATGAAAGAGAACAACAATCCCTGCATGAGTAA
Upstream 100 bases:
>100_bases AACTCACGGGCGTATGTGAAATCATACGCAACCGGAACCAGTGCAATCTTTACCCCGAACTTTTATTATGGACTAACCTG CCGCATTAAACTTTAGAAAT
Downstream 100 bases:
>100_bases TATGAAAGGAATATATATAGGATGTATGCTGTTGTGTATAGCAGCCGTAAGCTCGGCACAGACTTACGATGTTATCGAAC GACGAAATTCATGGAATGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 411; Mature: 411
Protein sequence:
>411_residues MKQQSIYIILLFVTSLLGGCTDLDKGNPYEDQLHTLQVTAVYPDDYAEYLREGITVQIEDIARGNSYKTVTDQNGTAQFA LTNGIYRIQISDKADQHIFNGLADKVKLVNGDITLNVPLTHSKAGAIIIKEIYCGGCTKLPQEGTYQADKYIILHNNDSQ TQYLDHLCLGTLDPYNSQSTNVWVTQDEATGATIFPDFAPIVQCIWQFGGNGTSFPLAPGADAVIAVNGAIDHAAQYPLS VNLNKPGYFACYNNVYYWNTMYHPAPGDQISRDHYLDVVIKLGQANAYTFSIFSPATVIFKAQDTTIQEYVQQTGSVIQK PGSTVDQVIKIPLDWVIDGVEVYYGGSSSNKKRISPSIDAGYVSQSALYDGRSLHRRVDEEASKEAGYEILEDTNNSSAD FYEREQQSLHE
Sequences:
>Translated_411_residues MKQQSIYIILLFVTSLLGGCTDLDKGNPYEDQLHTLQVTAVYPDDYAEYLREGITVQIEDIARGNSYKTVTDQNGTAQFA LTNGIYRIQISDKADQHIFNGLADKVKLVNGDITLNVPLTHSKAGAIIIKEIYCGGCTKLPQEGTYQADKYIILHNNDSQ TQYLDHLCLGTLDPYNSQSTNVWVTQDEATGATIFPDFAPIVQCIWQFGGNGTSFPLAPGADAVIAVNGAIDHAAQYPLS VNLNKPGYFACYNNVYYWNTMYHPAPGDQISRDHYLDVVIKLGQANAYTFSIFSPATVIFKAQDTTIQEYVQQTGSVIQK PGSTVDQVIKIPLDWVIDGVEVYYGGSSSNKKRISPSIDAGYVSQSALYDGRSLHRRVDEEASKEAGYEILEDTNNSSAD FYEREQQSLHE >Mature_411_residues MKQQSIYIILLFVTSLLGGCTDLDKGNPYEDQLHTLQVTAVYPDDYAEYLREGITVQIEDIARGNSYKTVTDQNGTAQFA LTNGIYRIQISDKADQHIFNGLADKVKLVNGDITLNVPLTHSKAGAIIIKEIYCGGCTKLPQEGTYQADKYIILHNNDSQ TQYLDHLCLGTLDPYNSQSTNVWVTQDEATGATIFPDFAPIVQCIWQFGGNGTSFPLAPGADAVIAVNGAIDHAAQYPLS VNLNKPGYFACYNNVYYWNTMYHPAPGDQISRDHYLDVVIKLGQANAYTFSIFSPATVIFKAQDTTIQEYVQQTGSVIQK PGSTVDQVIKIPLDWVIDGVEVYYGGSSSNKKRISPSIDAGYVSQSALYDGRSLHRRVDEEASKEAGYEILEDTNNSSAD FYEREQQSLHE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45500; Mature: 45500
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQQSIYIILLFVTSLLGGCTDLDKGNPYEDQLHTLQVTAVYPDDYAEYLREGITVQIED CCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHCCCEEEEEE IARGNSYKTVTDQNGTAQFALTNGIYRIQISDKADQHIFNGLADKVKLVNGDITLNVPLT ECCCCCEEEEECCCCEEEEEEECCEEEEEECCCHHHHHHHHHHHEEEEECCCEEEEEEEE HSKAGAIIIKEIYCGGCTKLPQEGTYQADKYIILHNNDSQTQYLDHLCLGTLDPYNSQST CCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCC NVWVTQDEATGATIFPDFAPIVQCIWQFGGNGTSFPLAPGADAVIAVNGAIDHAAQYPLS EEEEEECCCCCCEECCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCHHHHHCCCEE VNLNKPGYFACYNNVYYWNTMYHPAPGDQISRDHYLDVVIKLGQANAYTFSIFSPATVIF EECCCCCEEEEECCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCEEEEE KAQDTTIQEYVQQTGSVIQKPGSTVDQVIKIPLDWVIDGVEVYYGGSSSNKKRISPSIDA EECCCHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHEEECEEEEECCCCCCCCCCCCCCCC GYVSQSALYDGRSLHRRVDEEASKEAGYEILEDTNNSSADFYEREQQSLHE CCCCHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHCC >Mature Secondary Structure MKQQSIYIILLFVTSLLGGCTDLDKGNPYEDQLHTLQVTAVYPDDYAEYLREGITVQIED CCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHCCCEEEEEE IARGNSYKTVTDQNGTAQFALTNGIYRIQISDKADQHIFNGLADKVKLVNGDITLNVPLT ECCCCCEEEEECCCCEEEEEEECCEEEEEECCCHHHHHHHHHHHEEEEECCCEEEEEEEE HSKAGAIIIKEIYCGGCTKLPQEGTYQADKYIILHNNDSQTQYLDHLCLGTLDPYNSQST CCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCC NVWVTQDEATGATIFPDFAPIVQCIWQFGGNGTSFPLAPGADAVIAVNGAIDHAAQYPLS EEEEEECCCCCCEECCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCHHHHHCCCEE VNLNKPGYFACYNNVYYWNTMYHPAPGDQISRDHYLDVVIKLGQANAYTFSIFSPATVIF EECCCCCEEEEECCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCEEEEE KAQDTTIQEYVQQTGSVIQKPGSTVDQVIKIPLDWVIDGVEVYYGGSSSNKKRISPSIDA EECCCHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHEEECEEEEECCCCCCCCCCCCCCCC GYVSQSALYDGRSLHRRVDEEASKEAGYEILEDTNNSSADFYEREQQSLHE CCCCHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA