| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29349030
Identifier: 29349030
GI number: 29349030
Start: 4692339
End: 4694783
Strand: Reverse
Name: 29349030
Synonym: BT_3622
Alternate gene names: NA
Gene position: 4694783-4692339 (Counterclockwise)
Preceding gene: 29349031
Following gene: 29349029
Centisome position: 74.99
GC content: 41.92
Gene sequence:
>2445_bases ATGAAAAAGAAAATCAATTGCTTCATACCTTTTGGCAATCCGAAAGATACGATACAAACTGTAAAAGAATTGCAAGCTTC AGAATTAGTGAACAAAATCTACCTGCTAAGCGCTGATACCAACAAAGAGTGCTTACCGGGGTGTGAATGTCTCCTCATTA ACGGTCTCTACTCTACAAGTACGATTAAAACAATTGCTGACAACGCAGATGATGCCAGCTATCTTTTGCTTTACACGAAA CAGACCCCGCTAAAACTAGGATTGTACGCACTGGAACGCATGACACAGATTATACAGAGTTCCTCAGAAAATGCAATGGT ATACGCAGATCATTACCAACTGGTTGACGGAGTTCTCAAACAAGCTCCCGTTATTGATTATCAACAAGGAAGCCTCCGGG ATGATTTTGATTTCGGTTCGGTGCTTTTATTCAATTCCGAAATTTTCACCCTTGCTTCAAGTATTCTGGAGGAAACAGTT TTCCAATATGCTGCATTTTATGAAATGCGTCTGATGCTAGGTAATCTATTTCAAATCATCCATATCAATGAGTTCCTTTA CACAGAAATAGAAACAGATACTCGGAAAAGCGGAGAAAAACAATTCGACTACGTAAATCCTAAAAATCGGGAAGTACAGA TCGAAATGGAGAAAGTTTGTATCAAGCATCTGAAAGAAATCAATGCCTATGTAAGACCTTCTTCCCGAACAGTAAACTTG GACAGAGAAGCTTTTGAGTTTGAAGCATCTGTCATCATACCTGTCCGTAATCGTATCCGGACCATTCGTGACGCCGTAAA TTCTGCTTTGAGCCAGCAAACGACTTTTCCCTTTAATGTGATTGTGATCGACAATCACTCAACGGACGGTACCACCGAAG CCCTCCAGGAATTTAGTGCGGACAATAGACTAATACATATCATTCCCCAGGAGAATGATCTCGGTATAGGAGGTTGCTGG AATGTAGGAGTACACCATGAGAAATGCGGTAAATTTGCCGTGCAACTGGATAGCGATGACCTGTATAAGGATGAGCATAC CTTACAGAAAATCGTCGATACCTTCTATCAGCAGAACTGTGCAATGGTGATAGGGACTTACCTAATGACGGATTTTCAGA TGAACGAGATAGCTCCCGGTGTCATTGACCATAAAGAGTGGACAGTAGAGGACGGTCCCAACAATGCTTTACGTATCAAT GGGTTGGGTGCCCCACGGGCCTTCTACACTCCCATCCTTCGCAAGATCAAATTCCCCAATACCAGTTATGGAGAAGATTA TGCCATAGGTCTGAGTATTTCTCGTGAATATACGATCGGTCGTATTTATGATGTAATCTATCTTTGCCGCCGTTGGGAAG GCAACTCTGACGCAGCATTAGATATCGAAAAAATTAACCGGAACAATTTCTACAAAGACAGTATCCGAACCTGGGAGTTA CAGGCAAGAATCCGGATGCACAGCATTGATGAAAGTTTTCAGCGTCTCGTCAACGAGATGATAGAAAAACAGAAAAAAGA CTGGAAGCTGGCAAAAAAGAATTATAAGGAATTAGAACAGAATCTTAAAAAAGAAAAGACGCTGGAACTCAAACTAGGAG GGGACACCAAGAGAGTCAGATTCTTCCCAAATCCACAACGGGCAATCTCTACAATGGCCCAGACCGACTCTCAGTCCATA CAAGAAAGACCTTGTTTTCTGTGCAATGACAATCGCCCGGCAGAACAAACGTCTTTGTCACTTGGACATTATGAGGTATG CCTCAATCCTTATCCGATTTTCCGCCGGCATCTGACCATAATTGAAGAGGAACATACCCCGCAAACCATCAAAAACCGTT TTGAGGATATGCTTTTCCTTGCCGAAAACATGAACGAGTTCCTCATCTTATATAACGGACCGGAATGCGGAGCTTCCGCC CCTGACCATATGCACTTTCAGGCAGCAGGAAAAGAGGAAAAGATTGCCAATCCTTTTGGGATGACTTTCATATCGGACAT GCTTAGTTCTGAAGATAGCGTACATAGTCATCTAGAAAATGGGTTCACCACGAGCATTGGCATTTCATCTCCAAACAGAA GAGGGATCATTGAAATGTTTGAGTATCTTTACGATAAGATAGTTTCTATTTATCATGACAAAGAACCTTTAATCAATGTG ATTGCCTGGTATGGACTCGAAACAGTAAACCGCACTGGAGGCGATGAAATAAAACAGTGGAACTGTATTATTTTCCTACG TTCTAAACATCGGCCGGAATGTTATTATGCCCAAGGGAAAAAAGGCTTATTGATAAGCCCGGCTATTGCGGAGATGTGTG GCGTATTCCCCATTGTAAGAGAAGAAGATTTGGATAAGATAACAGCTAAAAAAATCACTCAGATTTACAAGGAGGTCAGT TTGTCACAGGAACAGTTAAAAGCACTCACCGATCAAACATCCTAG
Upstream 100 bases:
>100_bases ATATTGAATGCTGCGTTTACTTTTCTGGGGCTTTGCCTGCTCATCAAAAGGAAATCGTCAGTAGCCCCTATCAACAACTC TTTAATAAAAAAACATTAAA
Downstream 100 bases:
>100_bases TAAAGAAGAAATGGAAGAACCTCAGATTACAGTCGGTATCCTTTCGGGAAAAGAAATTGAATTTTCTTTTCCCGAAAGCT TCACTACTCCTGACGGCACA
Product: putative glycosyltransferase
Products: NA
Alternate protein names: Glycosyltransferase; Glycoside Transferase Family 2 Protein; Cytoplasmic Protein; Group 2 Family Glycosyltransferase; LOW QUALITY PROTEIN Glycosyl Transferase Group 2 Family; SpoIID/LytB Domain Protein; Glycoside Hydrolase
Number of amino acids: Translated: 814; Mature: 814
Protein sequence:
>814_residues MKKKINCFIPFGNPKDTIQTVKELQASELVNKIYLLSADTNKECLPGCECLLINGLYSTSTIKTIADNADDASYLLLYTK QTPLKLGLYALERMTQIIQSSSENAMVYADHYQLVDGVLKQAPVIDYQQGSLRDDFDFGSVLLFNSEIFTLASSILEETV FQYAAFYEMRLMLGNLFQIIHINEFLYTEIETDTRKSGEKQFDYVNPKNREVQIEMEKVCIKHLKEINAYVRPSSRTVNL DREAFEFEASVIIPVRNRIRTIRDAVNSALSQQTTFPFNVIVIDNHSTDGTTEALQEFSADNRLIHIIPQENDLGIGGCW NVGVHHEKCGKFAVQLDSDDLYKDEHTLQKIVDTFYQQNCAMVIGTYLMTDFQMNEIAPGVIDHKEWTVEDGPNNALRIN GLGAPRAFYTPILRKIKFPNTSYGEDYAIGLSISREYTIGRIYDVIYLCRRWEGNSDAALDIEKINRNNFYKDSIRTWEL QARIRMHSIDESFQRLVNEMIEKQKKDWKLAKKNYKELEQNLKKEKTLELKLGGDTKRVRFFPNPQRAISTMAQTDSQSI QERPCFLCNDNRPAEQTSLSLGHYEVCLNPYPIFRRHLTIIEEEHTPQTIKNRFEDMLFLAENMNEFLILYNGPECGASA PDHMHFQAAGKEEKIANPFGMTFISDMLSSEDSVHSHLENGFTTSIGISSPNRRGIIEMFEYLYDKIVSIYHDKEPLINV IAWYGLETVNRTGGDEIKQWNCIIFLRSKHRPECYYAQGKKGLLISPAIAEMCGVFPIVREEDLDKITAKKITQIYKEVS LSQEQLKALTDQTS
Sequences:
>Translated_814_residues MKKKINCFIPFGNPKDTIQTVKELQASELVNKIYLLSADTNKECLPGCECLLINGLYSTSTIKTIADNADDASYLLLYTK QTPLKLGLYALERMTQIIQSSSENAMVYADHYQLVDGVLKQAPVIDYQQGSLRDDFDFGSVLLFNSEIFTLASSILEETV FQYAAFYEMRLMLGNLFQIIHINEFLYTEIETDTRKSGEKQFDYVNPKNREVQIEMEKVCIKHLKEINAYVRPSSRTVNL DREAFEFEASVIIPVRNRIRTIRDAVNSALSQQTTFPFNVIVIDNHSTDGTTEALQEFSADNRLIHIIPQENDLGIGGCW NVGVHHEKCGKFAVQLDSDDLYKDEHTLQKIVDTFYQQNCAMVIGTYLMTDFQMNEIAPGVIDHKEWTVEDGPNNALRIN GLGAPRAFYTPILRKIKFPNTSYGEDYAIGLSISREYTIGRIYDVIYLCRRWEGNSDAALDIEKINRNNFYKDSIRTWEL QARIRMHSIDESFQRLVNEMIEKQKKDWKLAKKNYKELEQNLKKEKTLELKLGGDTKRVRFFPNPQRAISTMAQTDSQSI QERPCFLCNDNRPAEQTSLSLGHYEVCLNPYPIFRRHLTIIEEEHTPQTIKNRFEDMLFLAENMNEFLILYNGPECGASA PDHMHFQAAGKEEKIANPFGMTFISDMLSSEDSVHSHLENGFTTSIGISSPNRRGIIEMFEYLYDKIVSIYHDKEPLINV IAWYGLETVNRTGGDEIKQWNCIIFLRSKHRPECYYAQGKKGLLISPAIAEMCGVFPIVREEDLDKITAKKITQIYKEVS LSQEQLKALTDQTS >Mature_814_residues MKKKINCFIPFGNPKDTIQTVKELQASELVNKIYLLSADTNKECLPGCECLLINGLYSTSTIKTIADNADDASYLLLYTK QTPLKLGLYALERMTQIIQSSSENAMVYADHYQLVDGVLKQAPVIDYQQGSLRDDFDFGSVLLFNSEIFTLASSILEETV FQYAAFYEMRLMLGNLFQIIHINEFLYTEIETDTRKSGEKQFDYVNPKNREVQIEMEKVCIKHLKEINAYVRPSSRTVNL DREAFEFEASVIIPVRNRIRTIRDAVNSALSQQTTFPFNVIVIDNHSTDGTTEALQEFSADNRLIHIIPQENDLGIGGCW NVGVHHEKCGKFAVQLDSDDLYKDEHTLQKIVDTFYQQNCAMVIGTYLMTDFQMNEIAPGVIDHKEWTVEDGPNNALRIN GLGAPRAFYTPILRKIKFPNTSYGEDYAIGLSISREYTIGRIYDVIYLCRRWEGNSDAALDIEKINRNNFYKDSIRTWEL QARIRMHSIDESFQRLVNEMIEKQKKDWKLAKKNYKELEQNLKKEKTLELKLGGDTKRVRFFPNPQRAISTMAQTDSQSI QERPCFLCNDNRPAEQTSLSLGHYEVCLNPYPIFRRHLTIIEEEHTPQTIKNRFEDMLFLAENMNEFLILYNGPECGASA PDHMHFQAAGKEEKIANPFGMTFISDMLSSEDSVHSHLENGFTTSIGISSPNRRGIIEMFEYLYDKIVSIYHDKEPLINV IAWYGLETVNRTGGDEIKQWNCIIFLRSKHRPECYYAQGKKGLLISPAIAEMCGVFPIVREEDLDKITAKKITQIYKEVS LSQEQLKALTDQTS
Specific function: Unknown
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 93503; Mature: 93503
Theoretical pI: Translated: 5.41; Mature: 5.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKINCFIPFGNPKDTIQTVKELQASELVNKIYLLSADTNKECLPGCECLLINGLYSTS CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCEEEEEECCCCCC TIKTIADNADDASYLLLYTKQTPLKLGLYALERMTQIIQSSSENAMVYADHYQLVDGVLK HHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHH QAPVIDYQQGSLRDDFDFGSVLLFNSEIFTLASSILEETVFQYAAFYEMRLMLGNLFQII HCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE HINEFLYTEIETDTRKSGEKQFDYVNPKNREVQIEMEKVCIKHLKEINAYVRPSSRTVNL EECHHHEEEECCCHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCEEEC DREAFEFEASVIIPVRNRIRTIRDAVNSALSQQTTFPFNVIVIDNHSTDGTTEALQEFSA CHHHHEEECEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHCC DNRLIHIIPQENDLGIGGCWNVGVHHEKCGKFAVQLDSDDLYKDEHTLQKIVDTFYQQNC CCCEEEEEECCCCCCCCCEECCCCCHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCH AMVIGTYLMTDFQMNEIAPGVIDHKEWTVEDGPNNALRINGLGAPRAFYTPILRKIKFPN HHHHHHHHHCCCCHHHCCCCCCCCCCEEECCCCCCEEEEECCCCCHHHHHHHHHHCCCCC TSYGEDYAIGLSISREYTIGRIYDVIYLCRRWEGNSDAALDIEKINRNNFYKDSIRTWEL CCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCEEEEE QARIRMHSIDESFQRLVNEMIEKQKKDWKLAKKNYKELEQNLKKEKTLELKLGGDTKRVR EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEE FFPNPQRAISTMAQTDSQSIQERPCFLCNDNRPAEQTSLSLGHYEVCLNPYPIFRRHLTI ECCCHHHHHHHHHHCCHHHHHHCCCEEECCCCCCHHHHCCCCCEEEECCCCHHHHHHHHH IEEEHTPQTIKNRFEDMLFLAENMNEFLILYNGPECGASAPDHMHFQAAGKEEKIANPFG EECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEECCCCCHHCCCCHH MTFISDMLSSEDSVHSHLENGFTTSIGISSPNRRGIIEMFEYLYDKIVSIYHDKEPLINV HHHHHHHHCCCHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHH IAWYGLETVNRTGGDEIKQWNCIIFLRSKHRPECYYAQGKKGLLISPAIAEMCGVFPIVR HHHHCHHHHCCCCCCCCCEEEEEEEEECCCCCCEEEECCCCCEEECHHHHHHHCCCCCCC EEDLDKITAKKITQIYKEVSLSQEQLKALTDQTS CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC >Mature Secondary Structure MKKKINCFIPFGNPKDTIQTVKELQASELVNKIYLLSADTNKECLPGCECLLINGLYSTS CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCEEEEEECCCCCC TIKTIADNADDASYLLLYTKQTPLKLGLYALERMTQIIQSSSENAMVYADHYQLVDGVLK HHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHH QAPVIDYQQGSLRDDFDFGSVLLFNSEIFTLASSILEETVFQYAAFYEMRLMLGNLFQII HCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE HINEFLYTEIETDTRKSGEKQFDYVNPKNREVQIEMEKVCIKHLKEINAYVRPSSRTVNL EECHHHEEEECCCHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCEEEC DREAFEFEASVIIPVRNRIRTIRDAVNSALSQQTTFPFNVIVIDNHSTDGTTEALQEFSA CHHHHEEECEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHCC DNRLIHIIPQENDLGIGGCWNVGVHHEKCGKFAVQLDSDDLYKDEHTLQKIVDTFYQQNC CCCEEEEEECCCCCCCCCEECCCCCHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCH AMVIGTYLMTDFQMNEIAPGVIDHKEWTVEDGPNNALRINGLGAPRAFYTPILRKIKFPN HHHHHHHHHCCCCHHHCCCCCCCCCCEEECCCCCCEEEEECCCCCHHHHHHHHHHCCCCC TSYGEDYAIGLSISREYTIGRIYDVIYLCRRWEGNSDAALDIEKINRNNFYKDSIRTWEL CCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCEEEEE QARIRMHSIDESFQRLVNEMIEKQKKDWKLAKKNYKELEQNLKKEKTLELKLGGDTKRVR EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEE FFPNPQRAISTMAQTDSQSIQERPCFLCNDNRPAEQTSLSLGHYEVCLNPYPIFRRHLTI ECCCHHHHHHHHHHCCHHHHHHCCCEEECCCCCCHHHHCCCCCEEEECCCCHHHHHHHHH IEEEHTPQTIKNRFEDMLFLAENMNEFLILYNGPECGASAPDHMHFQAAGKEEKIANPFG EECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEECCCCCHHCCCCHH MTFISDMLSSEDSVHSHLENGFTTSIGISSPNRRGIIEMFEYLYDKIVSIYHDKEPLINV HHHHHHHHCCCHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHH IAWYGLETVNRTGGDEIKQWNCIIFLRSKHRPECYYAQGKKGLLISPAIAEMCGVFPIVR HHHHCHHHHCCCCCCCCCEEEEEEEEECCCCCCEEEECCCCCEEECHHHHHHHCCCCCCC EEDLDKITAKKITQIYKEVSLSQEQLKALTDQTS CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA