Definition Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome.
Accession NC_004663
Length 6,260,361

Click here to switch to the map view.

The map label for this gene is 29349011

Identifier: 29349011

GI number: 29349011

Start: 4667460

End: 4669145

Strand: Reverse

Name: 29349011

Synonym: BT_3603

Alternate gene names: NA

Gene position: 4669145-4667460 (Counterclockwise)

Preceding gene: 29349012

Following gene: 29349010

Centisome position: 74.58

GC content: 42.17

Gene sequence:

>1686_bases
ATGAAAAATATAAAAAAATACATTATAGGCATAGCAGCTAGCATTTGCTTGACACAATGTGATGTACTGGACGTAGATCC
TACTGGCTGGTACAGCGAGAATGTAGCATATTCCTCACTGGAAAATGTAGACCTTTACGTCAAAGGGCTATATAGCGTGC
TATATGATAATGCTACTATCAATATAGATTCTTACTGCTTAATGGACGATGGAGCTACAGATCTGTTAAAATACTCTTGG
TATGGAGTGAACGGAGGTGCCATGAATAAATTCTTTTATCAGACGAATTATGTCACCGAAACGAGCAACTTCCGCTCCAA
CTGGAGTGGTATGTATACCCGTATCCGTCAACTCAACGAATATTTCTATGACCGAAGCAAAGGTTATGGAGATAACTTAG
ATCAGGATGAAATGAAAAAGCGTACAGCAGAGGTTCGTTTCTTACGTGCATTTGCTTACCAGGAACTGGTGCTCCGTCAT
GGCGGAGTTATCCTGCGTACTGATGAAGATTATGTAGACGGACCTGACGAAAGAGCTAAAGCACGTTCATCTGAATCAGA
TTGCTGGGATTTCATTATCAACGAATACACCCAGGCAGTACAAGACCTTCCGGAAAACTGGACAGGTACCAATGTGGGGC
GTATTACCAAAGGAGCCGCTTACGGAATGAAAGCACGTGCGGCCCTTTATGCTAAACGCTGGGGGGATGCGATAGATGCC
TGCAATGAAGTATTAAAATTGAATTACAGTTTATTGCAAGGAACGACTGCCAATGATTACTACAAAATATTCACCTCAGT
CAATAATAGTGAGCTAATCCTTCCGGTTTACTTCCAACAGGGAAAGAACGCCAAGCAACATTCTTTTGACATCTACGTGT
GTCCACCATACGACTGGAAAGCAGCCGGTGTTACAGAAGGAAGTGTAGGTGCGGCAGTCACTCCATCTGATGAATACGCT
TCCTCTTTCGATATCAAAGTAAACGGTAGCTACCAATCTTTTGACTGGAGTAATCTCAGTTCCTACAACAATGCTCCATT
TACCAATCGCGAACCACGTTTTTACGCCTCCATTCTTTATAATGGAGCAACATGGAAAGGACGTACTCTCCAGTTGTATG
TAGATGGAAATGACGGATATATGGATTTTGCTACAACCGGACAAGATAATGTGCACAAATCAACAACAGGTTATCTGATT
CGTAAGTTCGCTTCTGATGATACCAATATCAACTTTAGCAGCATTTTGAGTGGACAATACTGGATAGAAATGCGTTTAGC
TGAAATTTACTTGATTCGTTCGGAAGCATATGCACGACAAAACGAGTTTGGAAAAGCCTATGCTGATCTGAAAACGATCC
GTGACCGCGTCGGACTGCCGGAACTCGCCCAACAAAATAATTGGAGTGATTATCTGGAAGATCTGTCTAAAGAACGTATT
TGTGAACTTGGAATGGAAGGACACCGATATTTCGACCTGATCCGTTGGGGAATCGCCGTAAGAACACTTGATCATAAACG
TCTGCACGGCGTTAAGATAACACAGGCCGGTGGCAGTTTCAGTTACGCACGAGTAGAATGCGATACACAAGACCGTTTAT
TCCCTGAAAAATATACAATTTTCCCTATTCCATACACAGAACTTCAAGACAACACACTCTGTGAACAAAATGAACTGTGG
AAATAA

Upstream 100 bases:

>100_bases
ATATCGACCCGGAAAGTACAAATGTAGCAACAGGATATTATCCACAACAACGTACATTCAGTTTTGGTATAGATGTTAGA
TTTTAAAACAAATAGTTAAT

Downstream 100 bases:

>100_bases
TAATTATTTAATAAGAGAAAAATTATGAAAATAAAATATCTATTCACCGGGGTACTAATATCAATGCTAGCCTTCATGAG
CTGCGAGGACCCGGACGATC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 561; Mature: 561

Protein sequence:

>561_residues
MKNIKKYIIGIAASICLTQCDVLDVDPTGWYSENVAYSSLENVDLYVKGLYSVLYDNATINIDSYCLMDDGATDLLKYSW
YGVNGGAMNKFFYQTNYVTETSNFRSNWSGMYTRIRQLNEYFYDRSKGYGDNLDQDEMKKRTAEVRFLRAFAYQELVLRH
GGVILRTDEDYVDGPDERAKARSSESDCWDFIINEYTQAVQDLPENWTGTNVGRITKGAAYGMKARAALYAKRWGDAIDA
CNEVLKLNYSLLQGTTANDYYKIFTSVNNSELILPVYFQQGKNAKQHSFDIYVCPPYDWKAAGVTEGSVGAAVTPSDEYA
SSFDIKVNGSYQSFDWSNLSSYNNAPFTNREPRFYASILYNGATWKGRTLQLYVDGNDGYMDFATTGQDNVHKSTTGYLI
RKFASDDTNINFSSILSGQYWIEMRLAEIYLIRSEAYARQNEFGKAYADLKTIRDRVGLPELAQQNNWSDYLEDLSKERI
CELGMEGHRYFDLIRWGIAVRTLDHKRLHGVKITQAGGSFSYARVECDTQDRLFPEKYTIFPIPYTELQDNTLCEQNELW
K

Sequences:

>Translated_561_residues
MKNIKKYIIGIAASICLTQCDVLDVDPTGWYSENVAYSSLENVDLYVKGLYSVLYDNATINIDSYCLMDDGATDLLKYSW
YGVNGGAMNKFFYQTNYVTETSNFRSNWSGMYTRIRQLNEYFYDRSKGYGDNLDQDEMKKRTAEVRFLRAFAYQELVLRH
GGVILRTDEDYVDGPDERAKARSSESDCWDFIINEYTQAVQDLPENWTGTNVGRITKGAAYGMKARAALYAKRWGDAIDA
CNEVLKLNYSLLQGTTANDYYKIFTSVNNSELILPVYFQQGKNAKQHSFDIYVCPPYDWKAAGVTEGSVGAAVTPSDEYA
SSFDIKVNGSYQSFDWSNLSSYNNAPFTNREPRFYASILYNGATWKGRTLQLYVDGNDGYMDFATTGQDNVHKSTTGYLI
RKFASDDTNINFSSILSGQYWIEMRLAEIYLIRSEAYARQNEFGKAYADLKTIRDRVGLPELAQQNNWSDYLEDLSKERI
CELGMEGHRYFDLIRWGIAVRTLDHKRLHGVKITQAGGSFSYARVECDTQDRLFPEKYTIFPIPYTELQDNTLCEQNELW
K
>Mature_561_residues
MKNIKKYIIGIAASICLTQCDVLDVDPTGWYSENVAYSSLENVDLYVKGLYSVLYDNATINIDSYCLMDDGATDLLKYSW
YGVNGGAMNKFFYQTNYVTETSNFRSNWSGMYTRIRQLNEYFYDRSKGYGDNLDQDEMKKRTAEVRFLRAFAYQELVLRH
GGVILRTDEDYVDGPDERAKARSSESDCWDFIINEYTQAVQDLPENWTGTNVGRITKGAAYGMKARAALYAKRWGDAIDA
CNEVLKLNYSLLQGTTANDYYKIFTSVNNSELILPVYFQQGKNAKQHSFDIYVCPPYDWKAAGVTEGSVGAAVTPSDEYA
SSFDIKVNGSYQSFDWSNLSSYNNAPFTNREPRFYASILYNGATWKGRTLQLYVDGNDGYMDFATTGQDNVHKSTTGYLI
RKFASDDTNINFSSILSGQYWIEMRLAEIYLIRSEAYARQNEFGKAYADLKTIRDRVGLPELAQQNNWSDYLEDLSKERI
CELGMEGHRYFDLIRWGIAVRTLDHKRLHGVKITQAGGSFSYARVECDTQDRLFPEKYTIFPIPYTELQDNTLCEQNELW
K

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 64317; Mature: 64317

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNIKKYIIGIAASICLTQCDVLDVDPTGWYSENVAYSSLENVDLYVKGLYSVLYDNATI
CCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCEEE
NIDSYCLMDDGATDLLKYSWYGVNGGAMNKFFYQTNYVTETSNFRSNWSGMYTRIRQLNE
EECCEEEECCCCHHHHEEEEECCCCCCCCEEEEEECEEEECCCCCCCHHHHHHHHHHHHH
YFYDRSKGYGDNLDQDEMKKRTAEVRFLRAFAYQELVLRHGGVILRTDEDYVDGPDERAK
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHH
ARSSESDCWDFIINEYTQAVQDLPENWTGTNVGRITKGAAYGMKARAALYAKRWGDAIDA
HCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHCCHHHHH
CNEVLKLNYSLLQGTTANDYYKIFTSVNNSELILPVYFQQGKNAKQHSFDIYVCPPYDWK
HHHHHHCCHHHHCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCC
AAGVTEGSVGAAVTPSDEYASSFDIKVNGSYQSFDWSNLSSYNNAPFTNREPRFYASILY
CCCCCCCCCCCEECCCHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
NGATWKGRTLQLYVDGNDGYMDFATTGQDNVHKSTTGYLIRKFASDDTNINFSSILSGQY
CCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHCCCCE
WIEMRLAEIYLIRSEAYARQNEFGKAYADLKTIRDRVGLPELAQQNNWSDYLEDLSKERI
EEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHH
CELGMEGHRYFDLIRWGIAVRTLDHKRLHGVKITQAGGSFSYARVECDTQDRLFPEKYTI
HHCCCCCHHHHHHHHHHHHEEEECCCHHCCEEEEECCCCEEEEEEEECCCCCCCCCCEEE
FPIPYTELQDNTLCEQNELWK
EECCHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKNIKKYIIGIAASICLTQCDVLDVDPTGWYSENVAYSSLENVDLYVKGLYSVLYDNATI
CCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCEEE
NIDSYCLMDDGATDLLKYSWYGVNGGAMNKFFYQTNYVTETSNFRSNWSGMYTRIRQLNE
EECCEEEECCCCHHHHEEEEECCCCCCCCEEEEEECEEEECCCCCCCHHHHHHHHHHHHH
YFYDRSKGYGDNLDQDEMKKRTAEVRFLRAFAYQELVLRHGGVILRTDEDYVDGPDERAK
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHH
ARSSESDCWDFIINEYTQAVQDLPENWTGTNVGRITKGAAYGMKARAALYAKRWGDAIDA
HCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHCCHHHHH
CNEVLKLNYSLLQGTTANDYYKIFTSVNNSELILPVYFQQGKNAKQHSFDIYVCPPYDWK
HHHHHHCCHHHHCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCC
AAGVTEGSVGAAVTPSDEYASSFDIKVNGSYQSFDWSNLSSYNNAPFTNREPRFYASILY
CCCCCCCCCCCEECCCHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
NGATWKGRTLQLYVDGNDGYMDFATTGQDNVHKSTTGYLIRKFASDDTNINFSSILSGQY
CCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHCCCCE
WIEMRLAEIYLIRSEAYARQNEFGKAYADLKTIRDRVGLPELAQQNNWSDYLEDLSKERI
EEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHH
CELGMEGHRYFDLIRWGIAVRTLDHKRLHGVKITQAGGSFSYARVECDTQDRLFPEKYTI
HHCCCCCHHHHHHHHHHHHEEEECCCHHCCEEEEECCCCEEEEEEEECCCCCCCCCCEEE
FPIPYTELQDNTLCEQNELWK
EECCHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA