| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29349011
Identifier: 29349011
GI number: 29349011
Start: 4667460
End: 4669145
Strand: Reverse
Name: 29349011
Synonym: BT_3603
Alternate gene names: NA
Gene position: 4669145-4667460 (Counterclockwise)
Preceding gene: 29349012
Following gene: 29349010
Centisome position: 74.58
GC content: 42.17
Gene sequence:
>1686_bases ATGAAAAATATAAAAAAATACATTATAGGCATAGCAGCTAGCATTTGCTTGACACAATGTGATGTACTGGACGTAGATCC TACTGGCTGGTACAGCGAGAATGTAGCATATTCCTCACTGGAAAATGTAGACCTTTACGTCAAAGGGCTATATAGCGTGC TATATGATAATGCTACTATCAATATAGATTCTTACTGCTTAATGGACGATGGAGCTACAGATCTGTTAAAATACTCTTGG TATGGAGTGAACGGAGGTGCCATGAATAAATTCTTTTATCAGACGAATTATGTCACCGAAACGAGCAACTTCCGCTCCAA CTGGAGTGGTATGTATACCCGTATCCGTCAACTCAACGAATATTTCTATGACCGAAGCAAAGGTTATGGAGATAACTTAG ATCAGGATGAAATGAAAAAGCGTACAGCAGAGGTTCGTTTCTTACGTGCATTTGCTTACCAGGAACTGGTGCTCCGTCAT GGCGGAGTTATCCTGCGTACTGATGAAGATTATGTAGACGGACCTGACGAAAGAGCTAAAGCACGTTCATCTGAATCAGA TTGCTGGGATTTCATTATCAACGAATACACCCAGGCAGTACAAGACCTTCCGGAAAACTGGACAGGTACCAATGTGGGGC GTATTACCAAAGGAGCCGCTTACGGAATGAAAGCACGTGCGGCCCTTTATGCTAAACGCTGGGGGGATGCGATAGATGCC TGCAATGAAGTATTAAAATTGAATTACAGTTTATTGCAAGGAACGACTGCCAATGATTACTACAAAATATTCACCTCAGT CAATAATAGTGAGCTAATCCTTCCGGTTTACTTCCAACAGGGAAAGAACGCCAAGCAACATTCTTTTGACATCTACGTGT GTCCACCATACGACTGGAAAGCAGCCGGTGTTACAGAAGGAAGTGTAGGTGCGGCAGTCACTCCATCTGATGAATACGCT TCCTCTTTCGATATCAAAGTAAACGGTAGCTACCAATCTTTTGACTGGAGTAATCTCAGTTCCTACAACAATGCTCCATT TACCAATCGCGAACCACGTTTTTACGCCTCCATTCTTTATAATGGAGCAACATGGAAAGGACGTACTCTCCAGTTGTATG TAGATGGAAATGACGGATATATGGATTTTGCTACAACCGGACAAGATAATGTGCACAAATCAACAACAGGTTATCTGATT CGTAAGTTCGCTTCTGATGATACCAATATCAACTTTAGCAGCATTTTGAGTGGACAATACTGGATAGAAATGCGTTTAGC TGAAATTTACTTGATTCGTTCGGAAGCATATGCACGACAAAACGAGTTTGGAAAAGCCTATGCTGATCTGAAAACGATCC GTGACCGCGTCGGACTGCCGGAACTCGCCCAACAAAATAATTGGAGTGATTATCTGGAAGATCTGTCTAAAGAACGTATT TGTGAACTTGGAATGGAAGGACACCGATATTTCGACCTGATCCGTTGGGGAATCGCCGTAAGAACACTTGATCATAAACG TCTGCACGGCGTTAAGATAACACAGGCCGGTGGCAGTTTCAGTTACGCACGAGTAGAATGCGATACACAAGACCGTTTAT TCCCTGAAAAATATACAATTTTCCCTATTCCATACACAGAACTTCAAGACAACACACTCTGTGAACAAAATGAACTGTGG AAATAA
Upstream 100 bases:
>100_bases ATATCGACCCGGAAAGTACAAATGTAGCAACAGGATATTATCCACAACAACGTACATTCAGTTTTGGTATAGATGTTAGA TTTTAAAACAAATAGTTAAT
Downstream 100 bases:
>100_bases TAATTATTTAATAAGAGAAAAATTATGAAAATAAAATATCTATTCACCGGGGTACTAATATCAATGCTAGCCTTCATGAG CTGCGAGGACCCGGACGATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 561; Mature: 561
Protein sequence:
>561_residues MKNIKKYIIGIAASICLTQCDVLDVDPTGWYSENVAYSSLENVDLYVKGLYSVLYDNATINIDSYCLMDDGATDLLKYSW YGVNGGAMNKFFYQTNYVTETSNFRSNWSGMYTRIRQLNEYFYDRSKGYGDNLDQDEMKKRTAEVRFLRAFAYQELVLRH GGVILRTDEDYVDGPDERAKARSSESDCWDFIINEYTQAVQDLPENWTGTNVGRITKGAAYGMKARAALYAKRWGDAIDA CNEVLKLNYSLLQGTTANDYYKIFTSVNNSELILPVYFQQGKNAKQHSFDIYVCPPYDWKAAGVTEGSVGAAVTPSDEYA SSFDIKVNGSYQSFDWSNLSSYNNAPFTNREPRFYASILYNGATWKGRTLQLYVDGNDGYMDFATTGQDNVHKSTTGYLI RKFASDDTNINFSSILSGQYWIEMRLAEIYLIRSEAYARQNEFGKAYADLKTIRDRVGLPELAQQNNWSDYLEDLSKERI CELGMEGHRYFDLIRWGIAVRTLDHKRLHGVKITQAGGSFSYARVECDTQDRLFPEKYTIFPIPYTELQDNTLCEQNELW K
Sequences:
>Translated_561_residues MKNIKKYIIGIAASICLTQCDVLDVDPTGWYSENVAYSSLENVDLYVKGLYSVLYDNATINIDSYCLMDDGATDLLKYSW YGVNGGAMNKFFYQTNYVTETSNFRSNWSGMYTRIRQLNEYFYDRSKGYGDNLDQDEMKKRTAEVRFLRAFAYQELVLRH GGVILRTDEDYVDGPDERAKARSSESDCWDFIINEYTQAVQDLPENWTGTNVGRITKGAAYGMKARAALYAKRWGDAIDA CNEVLKLNYSLLQGTTANDYYKIFTSVNNSELILPVYFQQGKNAKQHSFDIYVCPPYDWKAAGVTEGSVGAAVTPSDEYA SSFDIKVNGSYQSFDWSNLSSYNNAPFTNREPRFYASILYNGATWKGRTLQLYVDGNDGYMDFATTGQDNVHKSTTGYLI RKFASDDTNINFSSILSGQYWIEMRLAEIYLIRSEAYARQNEFGKAYADLKTIRDRVGLPELAQQNNWSDYLEDLSKERI CELGMEGHRYFDLIRWGIAVRTLDHKRLHGVKITQAGGSFSYARVECDTQDRLFPEKYTIFPIPYTELQDNTLCEQNELW K >Mature_561_residues MKNIKKYIIGIAASICLTQCDVLDVDPTGWYSENVAYSSLENVDLYVKGLYSVLYDNATINIDSYCLMDDGATDLLKYSW YGVNGGAMNKFFYQTNYVTETSNFRSNWSGMYTRIRQLNEYFYDRSKGYGDNLDQDEMKKRTAEVRFLRAFAYQELVLRH GGVILRTDEDYVDGPDERAKARSSESDCWDFIINEYTQAVQDLPENWTGTNVGRITKGAAYGMKARAALYAKRWGDAIDA CNEVLKLNYSLLQGTTANDYYKIFTSVNNSELILPVYFQQGKNAKQHSFDIYVCPPYDWKAAGVTEGSVGAAVTPSDEYA SSFDIKVNGSYQSFDWSNLSSYNNAPFTNREPRFYASILYNGATWKGRTLQLYVDGNDGYMDFATTGQDNVHKSTTGYLI RKFASDDTNINFSSILSGQYWIEMRLAEIYLIRSEAYARQNEFGKAYADLKTIRDRVGLPELAQQNNWSDYLEDLSKERI CELGMEGHRYFDLIRWGIAVRTLDHKRLHGVKITQAGGSFSYARVECDTQDRLFPEKYTIFPIPYTELQDNTLCEQNELW K
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64317; Mature: 64317
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNIKKYIIGIAASICLTQCDVLDVDPTGWYSENVAYSSLENVDLYVKGLYSVLYDNATI CCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCEEE NIDSYCLMDDGATDLLKYSWYGVNGGAMNKFFYQTNYVTETSNFRSNWSGMYTRIRQLNE EECCEEEECCCCHHHHEEEEECCCCCCCCEEEEEECEEEECCCCCCCHHHHHHHHHHHHH YFYDRSKGYGDNLDQDEMKKRTAEVRFLRAFAYQELVLRHGGVILRTDEDYVDGPDERAK HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHH ARSSESDCWDFIINEYTQAVQDLPENWTGTNVGRITKGAAYGMKARAALYAKRWGDAIDA HCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHCCHHHHH CNEVLKLNYSLLQGTTANDYYKIFTSVNNSELILPVYFQQGKNAKQHSFDIYVCPPYDWK HHHHHHCCHHHHCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCC AAGVTEGSVGAAVTPSDEYASSFDIKVNGSYQSFDWSNLSSYNNAPFTNREPRFYASILY CCCCCCCCCCCEECCCHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE NGATWKGRTLQLYVDGNDGYMDFATTGQDNVHKSTTGYLIRKFASDDTNINFSSILSGQY CCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHCCCCE WIEMRLAEIYLIRSEAYARQNEFGKAYADLKTIRDRVGLPELAQQNNWSDYLEDLSKERI EEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHH CELGMEGHRYFDLIRWGIAVRTLDHKRLHGVKITQAGGSFSYARVECDTQDRLFPEKYTI HHCCCCCHHHHHHHHHHHHEEEECCCHHCCEEEEECCCCEEEEEEEECCCCCCCCCCEEE FPIPYTELQDNTLCEQNELWK EECCHHCCCCCCCCCCCCCCC >Mature Secondary Structure MKNIKKYIIGIAASICLTQCDVLDVDPTGWYSENVAYSSLENVDLYVKGLYSVLYDNATI CCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCEEE NIDSYCLMDDGATDLLKYSWYGVNGGAMNKFFYQTNYVTETSNFRSNWSGMYTRIRQLNE EECCEEEECCCCHHHHEEEEECCCCCCCCEEEEEECEEEECCCCCCCHHHHHHHHHHHHH YFYDRSKGYGDNLDQDEMKKRTAEVRFLRAFAYQELVLRHGGVILRTDEDYVDGPDERAK HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHH ARSSESDCWDFIINEYTQAVQDLPENWTGTNVGRITKGAAYGMKARAALYAKRWGDAIDA HCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHCCHHHHH CNEVLKLNYSLLQGTTANDYYKIFTSVNNSELILPVYFQQGKNAKQHSFDIYVCPPYDWK HHHHHHCCHHHHCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCC AAGVTEGSVGAAVTPSDEYASSFDIKVNGSYQSFDWSNLSSYNNAPFTNREPRFYASILY CCCCCCCCCCCEECCCHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE NGATWKGRTLQLYVDGNDGYMDFATTGQDNVHKSTTGYLIRKFASDDTNINFSSILSGQY CCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHCCCCE WIEMRLAEIYLIRSEAYARQNEFGKAYADLKTIRDRVGLPELAQQNNWSDYLEDLSKERI EEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHH CELGMEGHRYFDLIRWGIAVRTLDHKRLHGVKITQAGGSFSYARVECDTQDRLFPEKYTI HHCCCCCHHHHHHHHHHHHEEEECCCHHCCEEEEECCCCEEEEEEEECCCCCCCCCCEEE FPIPYTELQDNTLCEQNELWK EECCHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA