| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is csxA [H]
Identifier: 29349007
GI number: 29349007
Start: 4660728
End: 4663490
Strand: Reverse
Name: csxA [H]
Synonym: BT_3599
Alternate gene names: 29349007
Gene position: 4663490-4660728 (Counterclockwise)
Preceding gene: 29349008
Following gene: 29349006
Centisome position: 74.49
GC content: 40.14
Gene sequence:
>2763_bases ATGAAAAAATTACTTATACTCTATCCGTTTCTATTGTTTTGCTTGATAAGCAAAGCAGATAACCAGTTGAAATTAACCAA TTGGGAAATAAAAAGTACAACCGAAATAAGCGAAAATGCGGAAAAAGTATCTATGCCTTCATTCCAAGCTACCGACTGGT ATGAAGCCACAGTACCGACTACTGTTTTGAATGCATTAGTGAAACAGAACGTTTATCCTGATCCCAGAATCGGCATGAAC AACTTTCTAATTCCTGATGTCTCTGATGAGTTTAATAAAAAAATGGACTTAGCTAAATACAGTTACCTGGGCAATGGAAA AAATCCTTGGCAGGAACCTTATTGGTATCGCACGACCTTCACTTTGCCTAAGCAATATAAAAACAAAAAAATATGGCTGA ACCTCAATGGAATTAACTATCGTGCAGACGTATGGATTAATGGACATCAAATAGGGAAAAAAGAAGATGTAGTAGGCATG TTCCGCCGCTTCAAATTCGATATAACCGATTATATCCAGCCCACACAGAACTGTATTGCTATAAAAATATATCAAGTGGA CCATCCCGGAACTCCTAACCCCGGAACACAATTTATAGCCTTTGGGCCTAACCGTGGTACGGCTTCCGATTTGTTCAAAG ATGAAACATTAAAATTCACAGGTGGTTGGGATTGCGCCCCTGTAGTGCGTGACCGGAATATGGGTATTTATCAGTCCGTC ACCCTGGAAGCAACCAGCCAGGTCACTATTGAAGACCCATATATTATCACTACTCTACCCCAAAAAGATACAACAGTTGC TGACATTACAATCAAAGCGACTGTACACAATCATTCGGATAAGATGATAAGCGGTAAAGTTAAAGCAACAATTCGCCTTA TCAACGAATTAGTTTATCCGAGTTACACACGTAAACTGGCTGGAAGCATGAAACCGATAAGCGTAACTCTGCCTGTCACA ATGCTCCCCAATGAAAGTAAAGAAATAATATTATCTCCCCAGAAGTTTTCCGTCTTATCTATACAGAACCCATACTTATG GTACCCAAACGGATATGGAGAGCAATATATGCACAGTCTCGATTTATCATTCGACATGAATAATGGGAAATCGTCCGATC GGGAGAAGGTAAACTTCGGAATTCGCGAAGTAACTTCGGAATTAATGAAAAACGGGGAAGAATATGGTCGTGTATTCTTT ATCAATGGCAAACGCATCTTCTGTAAAGGGGGATGGATACAACCGGATGTACTTCTCGACGACTCACCCAAACGAATTTA TGACCAGGCACGATTAATGGCAAATGCCAACATTACTTTGATCGGCAGTGAAGATATGCCTTCCCCTTCCGAAGATTGGC TAGATAGCTGGGATAAATACGGACTGATGAACTGGCATGTATTTTATCAATGCTACCGAATGTTCCCGGGACGTGACAAC CAGCATAATCCTCTCAACAATGACTTAGCTATCGCTTGCGTGAAAGACATGGTCAAAAGATACCGTAATCATCCCTGTAT CATTGCATGGTTCGGAGTTAATGAAGTGTTGGTAGATGAAGAATTGTATCATCCGACCAAAGAAGCCGTATTAAGCCTCG ACACGACACGCCCCTACATACCGACTACCAGTATCAGTTGGGACGTAGACAAACTAACTCCTTATTTAAAACCGGACTTA CCAACCGGTACTACCGATGATGGCGCTCCCGACTATAACTGGGCACCCTCCGATTACTACTTCGACAAAGTAGAAGAGGT TTATCTGCAAATGTTCAGAAACGAATTAGGCATGCCTTCCGTACCTGTATACGAAAGTTTGAAAAAGTTTATACCTACCA TTGATAAGCCACTCGACCGGAGAAATCCGATTTATCCATTAGACAGTATATGGGCGGAACACGGAGCATGGGACACCAAT AACTTCTGCTATCGTGCATACGACAATGCAATCCGAACCTTCTATAGCGACCCAGTCAGTAGCGAGGATTATGCATATAA AGGCCAGCTAGTAAGTTCAGAAGGGTATCGTGCCATGTTTGAGGCAGCCAACCACCGGATGTGGGATATCACAACAGGGA TAATGATCTGGAAACTAAACTCTTGTTGGCCCGATGTCTGCTGGCAAATTTATGATTGGTATCTGTCACCCAATGCTTCT TACTATTTCTCTAAGAAAGCAATGGAACCCATTCATATTCAAATGAATGCAAATACGAACCGGATTTCTGTGATAAACGC TACTCATCAAGAATTTAAATCTGTTATAGCCAAAGCCAGAATCATAGACTATTCGATGAAAGAATGCTGGGCATACACAG ATACCATATCCGTGGGCGCCGACCAATATAAAGAATTAGAAACCGTACCTCAACGAGGTGACCTTTCTGCCATATATTAT ATAAAGCTGGAATTAGAAGACTTAAACAGAAATCTTATTTCTGAAAACTTATATTGGCGTTACTCGCAACATCAAAATTT CTATTGGCTGGTAAATATGCCTAAAGTTACATTAAAGCAAGATTTAAAACTTCAAAAACAAGAAAAAGAGTATCAGATCA CGCTTACTTTAACGAATGACTCTGATAAATTATCCTTTTTCAACCACTTAATGATACAAAGAGAAAAAACAAAAGAAGTC GTAAATCCGGTATTCTGGAGTGATAACTTCATTTCATTGTTCCCTAATGAGACCCGTACCATCACTGCGACAGTATCCAT AGAGGATTTACATGGAGAAAATCCTATAATTATTATTAAATAA
Upstream 100 bases:
>100_bases TCCGCAAACTGCTGCAAGCATCCAGTTAAAGCCAGCAGGTTTAAAAGATAATGCCGGATTTATGGGTGCAGCAGCTTTAA TGTTTGTAGAATAAATTGTT
Downstream 100 bases:
>100_bases CTAATAAAACCAAGAAACATGAAACTATTACTTACAACCTTGGCAATAGTCTATCTAAGTTTGTTCATGAGCCTGCAAGC ACAAGAACAGGTACGGGTTA
Product: beta-mannosidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 920; Mature: 920
Protein sequence:
>920_residues MKKLLILYPFLLFCLISKADNQLKLTNWEIKSTTEISENAEKVSMPSFQATDWYEATVPTTVLNALVKQNVYPDPRIGMN NFLIPDVSDEFNKKMDLAKYSYLGNGKNPWQEPYWYRTTFTLPKQYKNKKIWLNLNGINYRADVWINGHQIGKKEDVVGM FRRFKFDITDYIQPTQNCIAIKIYQVDHPGTPNPGTQFIAFGPNRGTASDLFKDETLKFTGGWDCAPVVRDRNMGIYQSV TLEATSQVTIEDPYIITTLPQKDTTVADITIKATVHNHSDKMISGKVKATIRLINELVYPSYTRKLAGSMKPISVTLPVT MLPNESKEIILSPQKFSVLSIQNPYLWYPNGYGEQYMHSLDLSFDMNNGKSSDREKVNFGIREVTSELMKNGEEYGRVFF INGKRIFCKGGWIQPDVLLDDSPKRIYDQARLMANANITLIGSEDMPSPSEDWLDSWDKYGLMNWHVFYQCYRMFPGRDN QHNPLNNDLAIACVKDMVKRYRNHPCIIAWFGVNEVLVDEELYHPTKEAVLSLDTTRPYIPTTSISWDVDKLTPYLKPDL PTGTTDDGAPDYNWAPSDYYFDKVEEVYLQMFRNELGMPSVPVYESLKKFIPTIDKPLDRRNPIYPLDSIWAEHGAWDTN NFCYRAYDNAIRTFYSDPVSSEDYAYKGQLVSSEGYRAMFEAANHRMWDITTGIMIWKLNSCWPDVCWQIYDWYLSPNAS YYFSKKAMEPIHIQMNANTNRISVINATHQEFKSVIAKARIIDYSMKECWAYTDTISVGADQYKELETVPQRGDLSAIYY IKLELEDLNRNLISENLYWRYSQHQNFYWLVNMPKVTLKQDLKLQKQEKEYQITLTLTNDSDKLSFFNHLMIQREKTKEV VNPVFWSDNFISLFPNETRTITATVSIEDLHGENPIIIIK
Sequences:
>Translated_920_residues MKKLLILYPFLLFCLISKADNQLKLTNWEIKSTTEISENAEKVSMPSFQATDWYEATVPTTVLNALVKQNVYPDPRIGMN NFLIPDVSDEFNKKMDLAKYSYLGNGKNPWQEPYWYRTTFTLPKQYKNKKIWLNLNGINYRADVWINGHQIGKKEDVVGM FRRFKFDITDYIQPTQNCIAIKIYQVDHPGTPNPGTQFIAFGPNRGTASDLFKDETLKFTGGWDCAPVVRDRNMGIYQSV TLEATSQVTIEDPYIITTLPQKDTTVADITIKATVHNHSDKMISGKVKATIRLINELVYPSYTRKLAGSMKPISVTLPVT MLPNESKEIILSPQKFSVLSIQNPYLWYPNGYGEQYMHSLDLSFDMNNGKSSDREKVNFGIREVTSELMKNGEEYGRVFF INGKRIFCKGGWIQPDVLLDDSPKRIYDQARLMANANITLIGSEDMPSPSEDWLDSWDKYGLMNWHVFYQCYRMFPGRDN QHNPLNNDLAIACVKDMVKRYRNHPCIIAWFGVNEVLVDEELYHPTKEAVLSLDTTRPYIPTTSISWDVDKLTPYLKPDL PTGTTDDGAPDYNWAPSDYYFDKVEEVYLQMFRNELGMPSVPVYESLKKFIPTIDKPLDRRNPIYPLDSIWAEHGAWDTN NFCYRAYDNAIRTFYSDPVSSEDYAYKGQLVSSEGYRAMFEAANHRMWDITTGIMIWKLNSCWPDVCWQIYDWYLSPNAS YYFSKKAMEPIHIQMNANTNRISVINATHQEFKSVIAKARIIDYSMKECWAYTDTISVGADQYKELETVPQRGDLSAIYY IKLELEDLNRNLISENLYWRYSQHQNFYWLVNMPKVTLKQDLKLQKQEKEYQITLTLTNDSDKLSFFNHLMIQREKTKEV VNPVFWSDNFISLFPNETRTITATVSIEDLHGENPIIIIK >Mature_920_residues MKKLLILYPFLLFCLISKADNQLKLTNWEIKSTTEISENAEKVSMPSFQATDWYEATVPTTVLNALVKQNVYPDPRIGMN NFLIPDVSDEFNKKMDLAKYSYLGNGKNPWQEPYWYRTTFTLPKQYKNKKIWLNLNGINYRADVWINGHQIGKKEDVVGM FRRFKFDITDYIQPTQNCIAIKIYQVDHPGTPNPGTQFIAFGPNRGTASDLFKDETLKFTGGWDCAPVVRDRNMGIYQSV TLEATSQVTIEDPYIITTLPQKDTTVADITIKATVHNHSDKMISGKVKATIRLINELVYPSYTRKLAGSMKPISVTLPVT MLPNESKEIILSPQKFSVLSIQNPYLWYPNGYGEQYMHSLDLSFDMNNGKSSDREKVNFGIREVTSELMKNGEEYGRVFF INGKRIFCKGGWIQPDVLLDDSPKRIYDQARLMANANITLIGSEDMPSPSEDWLDSWDKYGLMNWHVFYQCYRMFPGRDN QHNPLNNDLAIACVKDMVKRYRNHPCIIAWFGVNEVLVDEELYHPTKEAVLSLDTTRPYIPTTSISWDVDKLTPYLKPDL PTGTTDDGAPDYNWAPSDYYFDKVEEVYLQMFRNELGMPSVPVYESLKKFIPTIDKPLDRRNPIYPLDSIWAEHGAWDTN NFCYRAYDNAIRTFYSDPVSSEDYAYKGQLVSSEGYRAMFEAANHRMWDITTGIMIWKLNSCWPDVCWQIYDWYLSPNAS YYFSKKAMEPIHIQMNANTNRISVINATHQEFKSVIAKARIIDYSMKECWAYTDTISVGADQYKELETVPQRGDLSAIYY IKLELEDLNRNLISENLYWRYSQHQNFYWLVNMPKVTLKQDLKLQKQEKEYQITLTLTNDSDKLSFFNHLMIQREKTKEV VNPVFWSDNFISLFPNETRTITATVSIEDLHGENPIIIIK
Specific function: Hydrolyzes chitosan and chitooligosaccharides with retention of anomeric configuration. Has no beta-mannosidase activity [H]
COG id: COG3250
COG function: function code G; Beta-galactosidase/beta-glucuronidase
Gene ontology:
Cell location: Secreted, extracellular space [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 2 family [H]
Homologues:
Organism=Homo sapiens, GI84798622, Length=795, Percent_Identity=21.1320754716981, Blast_Score=91, Evalue=6e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008979 - InterPro: IPR013812 - InterPro: IPR006104 - InterPro: IPR006102 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF00703 Glyco_hydro_2; PF02837 Glyco_hydro_2_N [H]
EC number: =3.2.1.165 [H]
Molecular weight: Translated: 106824; Mature: 106824
Theoretical pI: Translated: 6.02; Mature: 6.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLLILYPFLLFCLISKADNQLKLTNWEIKSTTEISENAEKVSMPSFQATDWYEATVPT CCCEEHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHCCHHHCCCCCCCCCCCCCCCCHH TVLNALVKQNVYPDPRIGMNNFLIPDVSDEFNKKMDLAKYSYLGNGKNPWQEPYWYRTTF HHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEE TLPKQYKNKKIWLNLNGINYRADVWINGHQIGKKEDVVGMFRRFKFDITDYIQPTQNCIA ECCHHHCCCEEEEEECCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCEEE IKIYQVDHPGTPNPGTQFIAFGPNRGTASDLFKDETLKFTGGWDCAPVVRDRNMGIYQSV EEEEEECCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEECCCCCCCEEECCCCCEEEEE TLEATSQVTIEDPYIITTLPQKDTTVADITIKATVHNHSDKMISGKVKATIRLINELVYP EEEECCEEEEECCEEEEECCCCCCEEEEEEEEEEEECCCCCEECCHHHHHHHHHHHHHCC SYTRKLAGSMKPISVTLPVTMLPNESKEIILSPQKFSVLSIQNPYLWYPNGYGEQYMHSL HHHHHHCCCCCCEEEEEEEEECCCCCCEEEECCCCEEEEEECCCEEECCCCCCHHHHHEE DLSFDMNNGKSSDREKVNFGIREVTSELMKNGEEYGRVFFINGKRIFCKGGWIQPDVLLD EEEEECCCCCCCCHHHHHCCHHHHHHHHHHCCHHCCEEEEEECCEEEEECCCCCCCEEEC DSPKRIYDQARLMANANITLIGSEDMPSPSEDWLDSWDKYGLMNWHVFYQCYRMFPGRDN CCCHHHHHHHHHEECCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC QHNPLNNDLAIACVKDMVKRYRNHPCIIAWFGVNEVLVDEELYHPTKEAVLSLDTTRPYI CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCEEEECHHHCCCCHHHEEEECCCCCCC PTTSISWDVDKLTPYLKPDLPTGTTDDGAPDYNWAPSDYYFDKVEEVYLQMFRNELGMPS CCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC VPVYESLKKFIPTIDKPLDRRNPIYPLDSIWAEHGAWDTNNFCYRAYDNAIRTFYSDPVS CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCC SEDYAYKGQLVSSEGYRAMFEAANHRMWDITTGIMIWKLNSCWPDVCWQIYDWYLSPNAS CCCCEEECEEECCCCHHHHHHHCCCEEEEEECCEEEEEECCCCHHHHHHHHHEEECCCCC YYFSKKAMEPIHIQMNANTNRISVINATHQEFKSVIAKARIIDYSMKECWAYTDTISVGA EEECCCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHEECCEEECCC DQYKELETVPQRGDLSAIYYIKLELEDLNRNLISENLYWRYSQHQNFYWLVNMPKVTLKQ HHHHHHHCCCCCCCCEEEEEEEEEEECCCHHHHCCCCEEEEECCCCEEEEEECCCHHHHH DLKLQKQEKEYQITLTLTNDSDKLSFFNHLMIQREKTKEVVNPVFWSDNFISLFPNETRT HHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHCCEEECCCEEEECCCCCEE ITATVSIEDLHGENPIIIIK EEEEEEEECCCCCCCEEEEC >Mature Secondary Structure MKKLLILYPFLLFCLISKADNQLKLTNWEIKSTTEISENAEKVSMPSFQATDWYEATVPT CCCEEHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHCCHHHCCCCCCCCCCCCCCCCHH TVLNALVKQNVYPDPRIGMNNFLIPDVSDEFNKKMDLAKYSYLGNGKNPWQEPYWYRTTF HHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEE TLPKQYKNKKIWLNLNGINYRADVWINGHQIGKKEDVVGMFRRFKFDITDYIQPTQNCIA ECCHHHCCCEEEEEECCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCEEE IKIYQVDHPGTPNPGTQFIAFGPNRGTASDLFKDETLKFTGGWDCAPVVRDRNMGIYQSV EEEEEECCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEECCCCCCCEEECCCCCEEEEE TLEATSQVTIEDPYIITTLPQKDTTVADITIKATVHNHSDKMISGKVKATIRLINELVYP EEEECCEEEEECCEEEEECCCCCCEEEEEEEEEEEECCCCCEECCHHHHHHHHHHHHHCC SYTRKLAGSMKPISVTLPVTMLPNESKEIILSPQKFSVLSIQNPYLWYPNGYGEQYMHSL HHHHHHCCCCCCEEEEEEEEECCCCCCEEEECCCCEEEEEECCCEEECCCCCCHHHHHEE DLSFDMNNGKSSDREKVNFGIREVTSELMKNGEEYGRVFFINGKRIFCKGGWIQPDVLLD EEEEECCCCCCCCHHHHHCCHHHHHHHHHHCCHHCCEEEEEECCEEEEECCCCCCCEEEC DSPKRIYDQARLMANANITLIGSEDMPSPSEDWLDSWDKYGLMNWHVFYQCYRMFPGRDN CCCHHHHHHHHHEECCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC QHNPLNNDLAIACVKDMVKRYRNHPCIIAWFGVNEVLVDEELYHPTKEAVLSLDTTRPYI CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCEEEECHHHCCCCHHHEEEECCCCCCC PTTSISWDVDKLTPYLKPDLPTGTTDDGAPDYNWAPSDYYFDKVEEVYLQMFRNELGMPS CCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC VPVYESLKKFIPTIDKPLDRRNPIYPLDSIWAEHGAWDTNNFCYRAYDNAIRTFYSDPVS CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCC SEDYAYKGQLVSSEGYRAMFEAANHRMWDITTGIMIWKLNSCWPDVCWQIYDWYLSPNAS CCCCEEECEEECCCCHHHHHHHCCCEEEEEECCEEEEEECCCCHHHHHHHHHEEECCCCC YYFSKKAMEPIHIQMNANTNRISVINATHQEFKSVIAKARIIDYSMKECWAYTDTISVGA EEECCCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHEECCEEECCC DQYKELETVPQRGDLSAIYYIKLELEDLNRNLISENLYWRYSQHQNFYWLVNMPKVTLKQ HHHHHHHCCCCCCCCEEEEEEEEEEECCCHHHHCCCCEEEEECCCCEEEEEECCCHHHHH DLKLQKQEKEYQITLTLTNDSDKLSFFNHLMIQREKTKEVVNPVFWSDNFISLFPNETRT HHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHCCEEECCCEEEECCCCCEE ITATVSIEDLHGENPIIIIK EEEEEEEECCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11572948; 12692562 [H]