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The map label for this gene is ydgJ [C]

Identifier: 29348991

GI number: 29348991

Start: 4637093

End: 4638418

Strand: Reverse

Name: ydgJ [C]

Synonym: BT_3583

Alternate gene names: 29348991

Gene position: 4638418-4637093 (Counterclockwise)

Preceding gene: 29348992

Following gene: 29348990

Centisome position: 74.09

GC content: 46.08

Gene sequence:

>1326_bases
ATGAGAAACAAAATAGAAAAAGGAGTCGATTTGAATCTCAGACAATTCATCAAAAGTCTGGGATATATCGCAGGAGGAAC
TGCACTGCTGGCAAGCACACCCTGGCTGTCTTCCTGCACACCCGAAAAGCTTAAAGAAATCCGCAACGAGAAAGCCCGGA
TCGCTTTAATTGGTACAGGTTCCAGGGGACAGTATCATATCCACAATCTAAAGGAGATTCCCCATGCCCGGATTGTTGCC
GTTTGTGACAATTATGCTCCTAACCTCCAACAAGCAGTAGAGTTATGTCCGGGTGCCAAAGCATACACTGACTACCGGAA
GCTTTTGGAATCGGCAGATATTGACGGCGTAATCATCTCTACTCCGTTGAATTGGCATGCCCCCATCGTACTGGATGCCC
TGGCAGCCGGCAAACACGTATTCTGTGAAAAAGCCATGGCACGGACTTTAGACGAATGCAAAGCTATATATGATGCTTAT
CAAACGACCAACCAGGTTCTCTACTTCTGTATGCAGCGTATGTATGACGAGAAGTATATCAAAGGAATGCAAATGATTCA
TTCCGGACTCATCGGAGATGTGGTAGGAATGCGCTGCCATTGGTTCAGAAATGCAGACTGGCGCCGTCCCGTCCCCTCAC
CGGAACTGGAACATCAAATCAACTGGCGATTGTACAAAGAAAGCTCAGGCGGATTAATGACCGAACTGGCCTGTCACCAA
CTGGAAGTATGCAACTGGGCAGCTAAAAGAATGCCGGTAAGCATCATCGGTATGGGTGACATTGTCTACTGGAAAGACGG
TCGCGAAGTATACGATAGCGTAAATGTGACTTACCGATACTCCGACGGAACCAAGATTGCCTACGAATCGTTGATTTCCA
ATAAATTCAACGGTATGGAAGACCAGATCCTCGGGCACAAAGGTACTATGGAAATGGCAAAAGGTATCTATTATCTGGAA
GAGGACCATTCAACATCGGGCATCCGGCAACTTATCGGACAGGTTAAGGATAAAGTATTCGCTGCTATCCCGACAGCCGG
ACCCAGTTGGAGACCGGAAACAAAAATGGAATACACGCCACATTTTGTTATTGAAGGAGACATTAACGTCAACAACGGGC
TGAGCATGATCGGAGCCGACAAAGATGGTTCCGATATCATTCTCTCTTCTTTCTGCCAATCATGTATCACTGGAGAAAAA
GCACAAAATGTGGTAGAAGAAGCCTATTGCTCCACCGTACTTTGCCTGCTTGGCAATCAAGCAATGGAGGAAGAGCGCCA
TATCCTTTTCCCCGACGAATATAAAATACCATATATGAAATTTTAA

Upstream 100 bases:

>100_bases
GAAATACTCAGTACAGTCTGGATGATTGCCGACGACCAACAACGGGAACAGATCAACGAGAACTTCAAACATATAAAAGG
AACTATATATACTCTATAAA

Downstream 100 bases:

>100_bases
ATTATGAAAGATATCATCATCACCTCCCAAAAAATTAAAAGGGAAAGAAACATTTATCTGATATGCTTTCTTCTCTCTTT
TGCAATCAATATTATTGCAA

Product: putative dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MRNKIEKGVDLNLRQFIKSLGYIAGGTALLASTPWLSSCTPEKLKEIRNEKARIALIGTGSRGQYHIHNLKEIPHARIVA
VCDNYAPNLQQAVELCPGAKAYTDYRKLLESADIDGVIISTPLNWHAPIVLDALAAGKHVFCEKAMARTLDECKAIYDAY
QTTNQVLYFCMQRMYDEKYIKGMQMIHSGLIGDVVGMRCHWFRNADWRRPVPSPELEHQINWRLYKESSGGLMTELACHQ
LEVCNWAAKRMPVSIIGMGDIVYWKDGREVYDSVNVTYRYSDGTKIAYESLISNKFNGMEDQILGHKGTMEMAKGIYYLE
EDHSTSGIRQLIGQVKDKVFAAIPTAGPSWRPETKMEYTPHFVIEGDINVNNGLSMIGADKDGSDIILSSFCQSCITGEK
AQNVVEEAYCSTVLCLLGNQAMEEERHILFPDEYKIPYMKF

Sequences:

>Translated_441_residues
MRNKIEKGVDLNLRQFIKSLGYIAGGTALLASTPWLSSCTPEKLKEIRNEKARIALIGTGSRGQYHIHNLKEIPHARIVA
VCDNYAPNLQQAVELCPGAKAYTDYRKLLESADIDGVIISTPLNWHAPIVLDALAAGKHVFCEKAMARTLDECKAIYDAY
QTTNQVLYFCMQRMYDEKYIKGMQMIHSGLIGDVVGMRCHWFRNADWRRPVPSPELEHQINWRLYKESSGGLMTELACHQ
LEVCNWAAKRMPVSIIGMGDIVYWKDGREVYDSVNVTYRYSDGTKIAYESLISNKFNGMEDQILGHKGTMEMAKGIYYLE
EDHSTSGIRQLIGQVKDKVFAAIPTAGPSWRPETKMEYTPHFVIEGDINVNNGLSMIGADKDGSDIILSSFCQSCITGEK
AQNVVEEAYCSTVLCLLGNQAMEEERHILFPDEYKIPYMKF
>Mature_441_residues
MRNKIEKGVDLNLRQFIKSLGYIAGGTALLASTPWLSSCTPEKLKEIRNEKARIALIGTGSRGQYHIHNLKEIPHARIVA
VCDNYAPNLQQAVELCPGAKAYTDYRKLLESADIDGVIISTPLNWHAPIVLDALAAGKHVFCEKAMARTLDECKAIYDAY
QTTNQVLYFCMQRMYDEKYIKGMQMIHSGLIGDVVGMRCHWFRNADWRRPVPSPELEHQINWRLYKESSGGLMTELACHQ
LEVCNWAAKRMPVSIIGMGDIVYWKDGREVYDSVNVTYRYSDGTKIAYESLISNKFNGMEDQILGHKGTMEMAKGIYYLE
EDHSTSGIRQLIGQVKDKVFAAIPTAGPSWRPETKMEYTPHFVIEGDINVNNGLSMIGADKDGSDIILSSFCQSCITGEK
AQNVVEEAYCSTVLCLLGNQAMEEERHILFPDEYKIPYMKF

Specific function: Glycosidase [H]

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family. Glycosyl hydrolase 109 subfamily [H]

Homologues:

Organism=Drosophila melanogaster, GI24581117, Length=214, Percent_Identity=26.6355140186916, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR006311
- InterPro:   IPR019546 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF10518 TAT_signal [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 49782; Mature: 49782

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS00041 HTH_ARAC_FAMILY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNKIEKGVDLNLRQFIKSLGYIAGGTALLASTPWLSSCTPEKLKEIRNEKARIALIGTG
CCCCCCCCCCCCHHHHHHHHCHHCCCCEEEECCCCCCCCCHHHHHHHHCCCCEEEEEECC
SRGQYHIHNLKEIPHARIVAVCDNYAPNLQQAVELCPGAKAYTDYRKLLESADIDGVIIS
CCCCEEECHHHHCCCCEEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEE
TPLNWHAPIVLDALAAGKHVFCEKAMARTLDECKAIYDAYQTTNQVLYFCMQRMYDEKYI
CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGMQMIHSGLIGDVVGMRCHWFRNADWRRPVPSPELEHQINWRLYKESSGGLMTELACHQ
HHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHH
LEVCNWAAKRMPVSIIGMGDIVYWKDGREVYDSVNVTYRYSDGTKIAYESLISNKFNGME
HHHHHHHHHHCCEEEEECCCEEEECCCHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCH
DQILGHKGTMEMAKGIYYLEEDHSTSGIRQLIGQVKDKVFAAIPTAGPSWRPETKMEYTP
HHHCCCCCHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCC
HFVIEGDINVNNGLSMIGADKDGSDIILSSFCQSCITGEKAQNVVEEAYCSTVLCLLGNQ
EEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCH
AMEEERHILFPDEYKIPYMKF
HHHCCCCEECCCCCCCCCCCC
>Mature Secondary Structure
MRNKIEKGVDLNLRQFIKSLGYIAGGTALLASTPWLSSCTPEKLKEIRNEKARIALIGTG
CCCCCCCCCCCCHHHHHHHHCHHCCCCEEEECCCCCCCCCHHHHHHHHCCCCEEEEEECC
SRGQYHIHNLKEIPHARIVAVCDNYAPNLQQAVELCPGAKAYTDYRKLLESADIDGVIIS
CCCCEEECHHHHCCCCEEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEE
TPLNWHAPIVLDALAAGKHVFCEKAMARTLDECKAIYDAYQTTNQVLYFCMQRMYDEKYI
CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGMQMIHSGLIGDVVGMRCHWFRNADWRRPVPSPELEHQINWRLYKESSGGLMTELACHQ
HHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHH
LEVCNWAAKRMPVSIIGMGDIVYWKDGREVYDSVNVTYRYSDGTKIAYESLISNKFNGME
HHHHHHHHHHCCEEEEECCCEEEECCCHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCH
DQILGHKGTMEMAKGIYYLEEDHSTSGIRQLIGQVKDKVFAAIPTAGPSWRPETKMEYTP
HHHCCCCCHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCC
HFVIEGDINVNNGLSMIGADKDGSDIILSSFCQSCITGEKAQNVVEEAYCSTVLCLLGNQ
EEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCH
AMEEERHILFPDEYKIPYMKF
HHHCCCCEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA