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The map label for this gene is yfbE [C]

Identifier: 29348785

GI number: 29348785

Start: 4352674

End: 4353783

Strand: Reverse

Name: yfbE [C]

Synonym: BT_3376

Alternate gene names: 29348785

Gene position: 4353783-4352674 (Counterclockwise)

Preceding gene: 29348793

Following gene: 29348784

Centisome position: 69.55

GC content: 37.93

Gene sequence:

>1110_bases
ATGATAGATAAACCTATATATGTGACTTCCCCCCTACTGCCTTCTTTGGAAGATTTTACTTTCTTATTAAAAGAAATATG
GGAAAGCAAAATGCTGACAAATAATGGCAACTTCCACCAAAAGCTAGAAGAGGAATTAGCTAAGTATCTTAAAGTTCCCT
ATCTCAGTTTGTTTACGAACGGAACTCTACCTTTAATAACCGCTTTACAAGCAATGAGAATTACCGGTGAAGTGATAACT
ACTCCCTTTAGCTTTGTAGCAACAACACATTCTCTTTGGTGGAATGGAATCAAACCTGTTTTTGTAGACATTGAGCCAGA
AACCTGTAATCTGGATCCTAGTAAAATAGAAGCGGCCATTACCCCCAGGACTACAGCTATCATGCCTGTACACGTTTACG
GGAAGCCTTGTAAAACGAAAGAGATTCAAGAAATTGCCAATAAATATGGATTAAAAGTCATATATGATGCCGCTCATGCT
TTTGGAGTAGAAATAAACGGGGAAAGCATTTTAAACTTTGGAGATATGGCTACTCTGAGTTTTCATGCAACGAAAGTTTA
CAATACTTTGGAAGGTGGAGCATTAGTCGTTCATGACGAGCAGACTAAAAAGCGCATCGACTATCTAAAGAACTTTGGTT
TTGCCAGTGAAACTGAAGTTGTAGCCCCCGGTATTAATAGTAAAGTAGATGAGGTACGCGCTGCATACGGATTACTTAAC
CTTAAGCAAGTAGATCATGCAATCAATTCCCGTCGCAAAGTAGCCATAAGATATAGAGATGAACTTCAAGGTGTTAAAGG
GATAACCTTTTTCAATGATATACCAGGAGTACGCCACAATTATTCTTATTTCCCAATTTTCATAAATGCTGAAGAATATG
GAATGACGCGTGATGAACTTTATTTTAAGATGAAAGAACATAATGTATTCGGACGCCGTTATTTCTATCCGCTAATCAGT
ACATTCTCAACATATCGCGGATTAGATTCTGCTAACCCTGACAATCTGCCAATAGCAACCCAAATGTCCAATAACGTCAT
CTGCTTGCCAATGCACCATGCTTTAAGTGAAAATGAAGTCGAGTATATCCTCCAAATTATAAAGAAATAG

Upstream 100 bases:

>100_bases
CATTAAATTGGAGCTGACACCCGATTCTTAATGGAGACAAAGACAATAACGTCATTAACCTAAACAACTATTATATAGAC
CAATAATATCCATAATTACA

Downstream 100 bases:

>100_bases
TATGATACAATTATCAGAAATAACAAACTCTATATCCCCTTCCTTAACAAGGCGTCTATTTAATTTGGCCCAAAAATATG
ACAATGTTATAGACTTCACA

Product: nucleotide sugar transaminase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MIDKPIYVTSPLLPSLEDFTFLLKEIWESKMLTNNGNFHQKLEEELAKYLKVPYLSLFTNGTLPLITALQAMRITGEVIT
TPFSFVATTHSLWWNGIKPVFVDIEPETCNLDPSKIEAAITPRTTAIMPVHVYGKPCKTKEIQEIANKYGLKVIYDAAHA
FGVEINGESILNFGDMATLSFHATKVYNTLEGGALVVHDEQTKKRIDYLKNFGFASETEVVAPGINSKVDEVRAAYGLLN
LKQVDHAINSRRKVAIRYRDELQGVKGITFFNDIPGVRHNYSYFPIFINAEEYGMTRDELYFKMKEHNVFGRRYFYPLIS
TFSTYRGLDSANPDNLPIATQMSNNVICLPMHHALSENEVEYILQIIKK

Sequences:

>Translated_369_residues
MIDKPIYVTSPLLPSLEDFTFLLKEIWESKMLTNNGNFHQKLEEELAKYLKVPYLSLFTNGTLPLITALQAMRITGEVIT
TPFSFVATTHSLWWNGIKPVFVDIEPETCNLDPSKIEAAITPRTTAIMPVHVYGKPCKTKEIQEIANKYGLKVIYDAAHA
FGVEINGESILNFGDMATLSFHATKVYNTLEGGALVVHDEQTKKRIDYLKNFGFASETEVVAPGINSKVDEVRAAYGLLN
LKQVDHAINSRRKVAIRYRDELQGVKGITFFNDIPGVRHNYSYFPIFINAEEYGMTRDELYFKMKEHNVFGRRYFYPLIS
TFSTYRGLDSANPDNLPIATQMSNNVICLPMHHALSENEVEYILQIIKK
>Mature_369_residues
MIDKPIYVTSPLLPSLEDFTFLLKEIWESKMLTNNGNFHQKLEEELAKYLKVPYLSLFTNGTLPLITALQAMRITGEVIT
TPFSFVATTHSLWWNGIKPVFVDIEPETCNLDPSKIEAAITPRTTAIMPVHVYGKPCKTKEIQEIANKYGLKVIYDAAHA
FGVEINGESILNFGDMATLSFHATKVYNTLEGGALVVHDEQTKKRIDYLKNFGFASETEVVAPGINSKVDEVRAAYGLLN
LKQVDHAINSRRKVAIRYRDELQGVKGITFFNDIPGVRHNYSYFPIFINAEEYGMTRDELYFKMKEHNVFGRRYFYPLIS
TFSTYRGLDSANPDNLPIATQMSNNVICLPMHHALSENEVEYILQIIKK

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=363, Percent_Identity=28.099173553719, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI2367285, Length=352, Percent_Identity=27.2727272727273, Blast_Score=102, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 41950; Mature: 41950

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDKPIYVTSPLLPSLEDFTFLLKEIWESKMLTNNGNFHQKLEEELAKYLKVPYLSLFTN
CCCCCEEEECCCCCCHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHCCCHHEECCC
GTLPLITALQAMRITGEVITTPFSFVATTHSLWWNGIKPVFVDIEPETCNLDPSKIEAAI
CCHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHEEEEE
TPRTTAIMPVHVYGKPCKTKEIQEIANKYGLKVIYDAAHAFGVEINGESILNFGDMATLS
CCCCEEEEEEEEECCCCCCHHHHHHHHHCCCEEEEECHHHEEEEECCCCEECCCCEEEEE
FHATKVYNTLEGGALVVHDEQTKKRIDYLKNFGFASETEVVAPGINSKVDEVRAAYGLLN
EEHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHHHHH
LKQVDHAINSRRKVAIRYRDELQGVKGITFFNDIPGVRHNYSYFPIFINAEEYGMTRDEL
HHHHHHHHCCCEEEEEEEHHHCCCCCCEEEECCCCCCCCCCEEEEEEEEHHHHCCCHHHH
YFKMKEHNVFGRRYFYPLISTFSTYRGLDSANPDNLPIATQMSNNVICLPMHHALSENEV
EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEECHHHCCCCHH
EYILQIIKK
HHHHHHHCC
>Mature Secondary Structure
MIDKPIYVTSPLLPSLEDFTFLLKEIWESKMLTNNGNFHQKLEEELAKYLKVPYLSLFTN
CCCCCEEEECCCCCCHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHCCCHHEECCC
GTLPLITALQAMRITGEVITTPFSFVATTHSLWWNGIKPVFVDIEPETCNLDPSKIEAAI
CCHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHEEEEE
TPRTTAIMPVHVYGKPCKTKEIQEIANKYGLKVIYDAAHAFGVEINGESILNFGDMATLS
CCCCEEEEEEEEECCCCCCHHHHHHHHHCCCEEEEECHHHEEEEECCCCEECCCCEEEEE
FHATKVYNTLEGGALVVHDEQTKKRIDYLKNFGFASETEVVAPGINSKVDEVRAAYGLLN
EEHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHHHHH
LKQVDHAINSRRKVAIRYRDELQGVKGITFFNDIPGVRHNYSYFPIFINAEEYGMTRDEL
HHHHHHHHCCCEEEEEEEHHHCCCCCCEEEECCCCCCCCCCEEEEEEEEHHHHCCCHHHH
YFKMKEHNVFGRRYFYPLISTFSTYRGLDSANPDNLPIATQMSNNVICLPMHHALSENEV
EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEECHHHCCCCHH
EYILQIIKK
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]