| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
Click here to switch to the map view.
The map label for this gene is 29348647
Identifier: 29348647
GI number: 29348647
Start: 4129062
End: 4130621
Strand: Reverse
Name: 29348647
Synonym: BT_3238
Alternate gene names: NA
Gene position: 4130621-4129062 (Counterclockwise)
Preceding gene: 29348648
Following gene: 29348646
Centisome position: 65.98
GC content: 41.47
Gene sequence:
>1560_bases ATGAAGAAATACATAATAATGGCCAGTGTGGCCGCGCTCGCAATAGGGCTCTCATCGTGTTCTAATTTCTTAGATGAGCT TCCCGACAATCGTACCGAGCTGAATGAAAACAATGTTGGCAAAATATTACTTTCCGCCTATCCTACTACAGCAATCTGTG AGATGGGGGAAATGTCATCAGACAATACTGATGCTTATCCGAATCGCTTTTCTTCTTTCAACCGTTTGCAAGAAGATCTC TATAAGTGGGCAGACTCTGCAGAACAAGATCAGGACTCTCCCCATGCACTTTGGGAATCTTGCTATATGGCAATCTCTGC CTGCAACGAGGTTTTGAAAGTGATTGAAGACGCAGGAAATCCAGCTTCTCTTAGCGCTGAAAAGGGAGAAGCCCTAGTAT GTCGCGCCTATGCTCATTTTTTACTTGCCAATATATTTTGTAACGCTTATAGCAGCCAAGCAAGTTCAGACTTGGGTATC CCCTACATGAAAACGATAGAGACAACCGTAAGCCCTGATTATCAACGCGGAACTCTAGAGGAGGTATACCAAAATATTGA GAAAGATCTATTGGAAGGTCTAGATCTGGTTACTGATATTTATGCAGTCCCCAAATATCACTTTACAAAGAAAGCAGCTC AAGCTTTTGCTGCACGCTTTTACTTGTACTATGTAAAATCGGATAAATCCAATTACACTAAGGTGATCGATTACGCAACA AAAGTATTAGGAAGCAATCCAGCCACCTCTGTACGCGACTGGAAATCTTTGGGTGCACTAGACATAAATGGCAGTGTTCA GCCAAATGCTTATGTAGATGCAACGAATGGCGCTAACTTATTATTGGTCAGTGCAGGTTCTTATTGGGGATATGTTCATG CACCTTATGGACTAGGCGAAAGATACGCCCATGGACCGAAAGTAGGCAATGAGACATGCAATTCCGTCGGTCCTTGGGGA AGTGACTATTATATGGGTGTTTGGAGTAACTCAAGTGCACTGCCGACCAAAATCGTTGTTATGAAAATAACTCAATATAA AGAAGTGGTTGACGCAGTAGCCGGAACAATCAACGGACACATGATCAATGCAGCATTTACTACAGATGAAACATTACTCT GTCGTGCAGAAGCTTATGCGATGAAAGAAATGTATCCACAGGCAATTGCTGATTTAAATATATGGCGAGAAGCATACACA CGTTCTACTACCCCGCTTACCACAGAATCTATAAACGATTTCTACGGAAGCATGGAATATTACACTCCTACTGAATCTAC AGTTAAGAAAAAATTGAACCCCGACTTTACTATAACAAATGAAACACAGGAAAATGTAATCCACTGCATACTTCATGCAC GACGTTTAACAACTTTACATGAAGGGTTACGCTGGCAGGATATTAAACGCTACGGTATTACTATCTATCGTCGTTTAATG AATGATAATGGTACTATTACCGTCACAGATAAGCTGGAACCCAATGATCCTCGTCGAGCAATACAGATACCGAGCGATGT TATTTCAGCCGGATTAAAACCAAACCCTAGAACTAAATAA
Upstream 100 bases:
>100_bases GGACCCGGAATTCTTTAATGCAGGTGGTGTTGCCTCACCGGTTCCCCGCCAATTTACTATTACTTTAAGACTGGGGTTAT AATTTAAAATAAGAACGAAT
Downstream 100 bases:
>100_bases AAATCGATAAGTTATGAAAAAATATATAATATATACATTGATCGTTACTATAGCCGTTTTTTTAGGCTCATGTAATAAAG ATGATATTGATACCAAACGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 519; Mature: 519
Protein sequence:
>519_residues MKKYIIMASVAALAIGLSSCSNFLDELPDNRTELNENNVGKILLSAYPTTAICEMGEMSSDNTDAYPNRFSSFNRLQEDL YKWADSAEQDQDSPHALWESCYMAISACNEVLKVIEDAGNPASLSAEKGEALVCRAYAHFLLANIFCNAYSSQASSDLGI PYMKTIETTVSPDYQRGTLEEVYQNIEKDLLEGLDLVTDIYAVPKYHFTKKAAQAFAARFYLYYVKSDKSNYTKVIDYAT KVLGSNPATSVRDWKSLGALDINGSVQPNAYVDATNGANLLLVSAGSYWGYVHAPYGLGERYAHGPKVGNETCNSVGPWG SDYYMGVWSNSSALPTKIVVMKITQYKEVVDAVAGTINGHMINAAFTTDETLLCRAEAYAMKEMYPQAIADLNIWREAYT RSTTPLTTESINDFYGSMEYYTPTESTVKKKLNPDFTITNETQENVIHCILHARRLTTLHEGLRWQDIKRYGITIYRRLM NDNGTITVTDKLEPNDPRRAIQIPSDVISAGLKPNPRTK
Sequences:
>Translated_519_residues MKKYIIMASVAALAIGLSSCSNFLDELPDNRTELNENNVGKILLSAYPTTAICEMGEMSSDNTDAYPNRFSSFNRLQEDL YKWADSAEQDQDSPHALWESCYMAISACNEVLKVIEDAGNPASLSAEKGEALVCRAYAHFLLANIFCNAYSSQASSDLGI PYMKTIETTVSPDYQRGTLEEVYQNIEKDLLEGLDLVTDIYAVPKYHFTKKAAQAFAARFYLYYVKSDKSNYTKVIDYAT KVLGSNPATSVRDWKSLGALDINGSVQPNAYVDATNGANLLLVSAGSYWGYVHAPYGLGERYAHGPKVGNETCNSVGPWG SDYYMGVWSNSSALPTKIVVMKITQYKEVVDAVAGTINGHMINAAFTTDETLLCRAEAYAMKEMYPQAIADLNIWREAYT RSTTPLTTESINDFYGSMEYYTPTESTVKKKLNPDFTITNETQENVIHCILHARRLTTLHEGLRWQDIKRYGITIYRRLM NDNGTITVTDKLEPNDPRRAIQIPSDVISAGLKPNPRTK >Mature_519_residues MKKYIIMASVAALAIGLSSCSNFLDELPDNRTELNENNVGKILLSAYPTTAICEMGEMSSDNTDAYPNRFSSFNRLQEDL YKWADSAEQDQDSPHALWESCYMAISACNEVLKVIEDAGNPASLSAEKGEALVCRAYAHFLLANIFCNAYSSQASSDLGI PYMKTIETTVSPDYQRGTLEEVYQNIEKDLLEGLDLVTDIYAVPKYHFTKKAAQAFAARFYLYYVKSDKSNYTKVIDYAT KVLGSNPATSVRDWKSLGALDINGSVQPNAYVDATNGANLLLVSAGSYWGYVHAPYGLGERYAHGPKVGNETCNSVGPWG SDYYMGVWSNSSALPTKIVVMKITQYKEVVDAVAGTINGHMINAAFTTDETLLCRAEAYAMKEMYPQAIADLNIWREAYT RSTTPLTTESINDFYGSMEYYTPTESTVKKKLNPDFTITNETQENVIHCILHARRLTTLHEGLRWQDIKRYGITIYRRLM NDNGTITVTDKLEPNDPRRAIQIPSDVISAGLKPNPRTK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57839; Mature: 57839
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKYIIMASVAALAIGLSSCSNFLDELPDNRTELNENNVGKILLSAYPTTAICEMGEMSS CCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCC DNTDAYPNRFSSFNRLQEDLYKWADSAEQDQDSPHALWESCYMAISACNEVLKVIEDAGN CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC PASLSAEKGEALVCRAYAHFLLANIFCNAYSSQASSDLGIPYMKTIETTVSPDYQRGTLE CCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCHH EVYQNIEKDLLEGLDLVTDIYAVPKYHFTKKAAQAFAARFYLYYVKSDKSNYTKVIDYAT HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHH KVLGSNPATSVRDWKSLGALDINGSVQPNAYVDATNGANLLLVSAGSYWGYVHAPYGLGE HHHCCCCCCCHHHHHHCCCEECCCCCCCCCEEECCCCCCEEEEECCCCCCEEECCCCCCC RYAHGPKVGNETCNSVGPWGSDYYMGVWSNSSALPTKIVVMKITQYKEVVDAVAGTINGH HHCCCCCCCCHHHHCCCCCCCCCEEEEECCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCE MINAAFTTDETLLCRAEAYAMKEMYPQAIADLNIWREAYTRSTTPLTTESINDFYGSMEY EEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCE YTPTESTVKKKLNPDFTITNETQENVIHCILHARRLTTLHEGLRWQDIKRYGITIYRRLM ECCCHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH NDNGTITVTDKLEPNDPRRAIQIPSDVISAGLKPNPRTK CCCCEEEEEECCCCCCCCCEEECCHHHHHCCCCCCCCCC >Mature Secondary Structure MKKYIIMASVAALAIGLSSCSNFLDELPDNRTELNENNVGKILLSAYPTTAICEMGEMSS CCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCC DNTDAYPNRFSSFNRLQEDLYKWADSAEQDQDSPHALWESCYMAISACNEVLKVIEDAGN CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC PASLSAEKGEALVCRAYAHFLLANIFCNAYSSQASSDLGIPYMKTIETTVSPDYQRGTLE CCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCHH EVYQNIEKDLLEGLDLVTDIYAVPKYHFTKKAAQAFAARFYLYYVKSDKSNYTKVIDYAT HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHH KVLGSNPATSVRDWKSLGALDINGSVQPNAYVDATNGANLLLVSAGSYWGYVHAPYGLGE HHHCCCCCCCHHHHHHCCCEECCCCCCCCCEEECCCCCCEEEEECCCCCCEEECCCCCCC RYAHGPKVGNETCNSVGPWGSDYYMGVWSNSSALPTKIVVMKITQYKEVVDAVAGTINGH HHCCCCCCCCHHHHCCCCCCCCCEEEEECCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCE MINAAFTTDETLLCRAEAYAMKEMYPQAIADLNIWREAYTRSTTPLTTESINDFYGSMEY EEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCE YTPTESTVKKKLNPDFTITNETQENVIHCILHARRLTTLHEGLRWQDIKRYGITIYRRLM ECCCHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH NDNGTITVTDKLEPNDPRRAIQIPSDVISAGLKPNPRTK CCCCEEEEEECCCCCCCCCEEECCHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA