| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
Click here to switch to the map view.
The map label for this gene is 29348513
Identifier: 29348513
GI number: 29348513
Start: 3948207
End: 3949400
Strand: Reverse
Name: 29348513
Synonym: BT_3104
Alternate gene names: NA
Gene position: 3949400-3948207 (Counterclockwise)
Preceding gene: 29348514
Following gene: 29348512
Centisome position: 63.09
GC content: 44.05
Gene sequence:
>1194_bases ATGGCACCTATCAGTACAGAACTGGTCAATAACACTTATAACGGTAATTTCACCGGAGTATACGAAGCAACTAAGGGAGA TATTATCGATACCGGTACAGGACGTTCTTCCGAACAATATAAGATAAAGAACTGGACGCTGAATAAAAGTTCCAATACTA ATTGCGGTTTGTTCGCTTCTATCGGTGCAGAAGGTATCGTACGTAATGTATGTATCGAGAATGTTGTTATCAAGGCCAAA GCCAAAGTTGGTGCGATTGCCGGTAACTGTTCTGGTAAAATTATCTCTTGCCACACAACAGGTAATGAGGGAAGCATCAG TACGGCTGCAACTACGGATGCTGAAATCTATCTCGGAGGAATTGTCGGTTATCTCACCGAGAAAGGCGAAGTTTCCTATT GCTCTAATACAGCGGCTATTGAAGGGACAGCCGGTTGTGTCGGTGGGGTTGTAGGAATCATAATGCGTGATGCTAACAAT GCTCCTGCCGTTGCATATTGTACCAATAAAGCGAATGTAGTTTGCAGCAGCAAATCACCGGTTGGAGGTGTGGTCGGTTC AATAGCGGGAGCAGCAGGAAATGACCTGATCAAAGTGACTGGTTGTGCAAATTCAGGAGAAATTTCTGGAACTCAGGCTA ACAATCAAGTAGGAGGAATTGTCGGTCGTGCAACTATTGATACCGAAATATCCCAGTCTTACAATACTGGTTCTATCACT GCGATGGGCTCGGCAAGTGGTATCATCGCACGTATGGGTGGAACCAATGCTATAGTCAGAGATTGCTACAATACAGGTGC GATAAAGAGCACAGGTACAGCTACCAATGGCAACAGCAATGCCGCAGGAATTGTAGCGACATGTACTATAGCAGCAGGAG GTGGCATGACAATCGAAAACTGTCATAACGTAGGAGACATGACAACTGCGAACGGGGCTTCTTTCGGAAACGGACTGTTC CATCGTACTGATGGCAAGATTTCTCAAATAACAATGAAAAGCTGTTTCTCTTTGAACGAAGACGGAAAGTCACAGAGTAG CGGAAGTGACTCATACATATCAGGTGGTTCTTCCAGTTATAAGAACCTGTCTGCAAGTGAAATGAAGAACACATCTTCAT TCACAAACTGGAATTTCAGTACGGTTTGGGAAATGGGAAGTGAATACCCGACATTACAGGGCTTATTAAAATAA
Upstream 100 bases:
>100_bases GAATATATTATCACGAAGCCCCGTCATTTGAGGAACGTTCAGCAAGTATCTTGATAAGAACTACAAACAGACTGTAGATA TTGACCTTACAGGCATAGAT
Downstream 100 bases:
>100_bases GGTTTAACAATCAATGAATAACGAATATAATATTATGAAACAGAAGATTCGATTTAAGTTGACGGATAGATACTTAGTCC TACTAATATGCTTTTTAGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 397; Mature: 396
Protein sequence:
>397_residues MAPISTELVNNTYNGNFTGVYEATKGDIIDTGTGRSSEQYKIKNWTLNKSSNTNCGLFASIGAEGIVRNVCIENVVIKAK AKVGAIAGNCSGKIISCHTTGNEGSISTAATTDAEIYLGGIVGYLTEKGEVSYCSNTAAIEGTAGCVGGVVGIIMRDANN APAVAYCTNKANVVCSSKSPVGGVVGSIAGAAGNDLIKVTGCANSGEISGTQANNQVGGIVGRATIDTEISQSYNTGSIT AMGSASGIIARMGGTNAIVRDCYNTGAIKSTGTATNGNSNAAGIVATCTIAAGGGMTIENCHNVGDMTTANGASFGNGLF HRTDGKISQITMKSCFSLNEDGKSQSSGSDSYISGGSSSYKNLSASEMKNTSSFTNWNFSTVWEMGSEYPTLQGLLK
Sequences:
>Translated_397_residues MAPISTELVNNTYNGNFTGVYEATKGDIIDTGTGRSSEQYKIKNWTLNKSSNTNCGLFASIGAEGIVRNVCIENVVIKAK AKVGAIAGNCSGKIISCHTTGNEGSISTAATTDAEIYLGGIVGYLTEKGEVSYCSNTAAIEGTAGCVGGVVGIIMRDANN APAVAYCTNKANVVCSSKSPVGGVVGSIAGAAGNDLIKVTGCANSGEISGTQANNQVGGIVGRATIDTEISQSYNTGSIT AMGSASGIIARMGGTNAIVRDCYNTGAIKSTGTATNGNSNAAGIVATCTIAAGGGMTIENCHNVGDMTTANGASFGNGLF HRTDGKISQITMKSCFSLNEDGKSQSSGSDSYISGGSSSYKNLSASEMKNTSSFTNWNFSTVWEMGSEYPTLQGLLK >Mature_396_residues APISTELVNNTYNGNFTGVYEATKGDIIDTGTGRSSEQYKIKNWTLNKSSNTNCGLFASIGAEGIVRNVCIENVVIKAKA KVGAIAGNCSGKIISCHTTGNEGSISTAATTDAEIYLGGIVGYLTEKGEVSYCSNTAAIEGTAGCVGGVVGIIMRDANNA PAVAYCTNKANVVCSSKSPVGGVVGSIAGAAGNDLIKVTGCANSGEISGTQANNQVGGIVGRATIDTEISQSYNTGSITA MGSASGIIARMGGTNAIVRDCYNTGAIKSTGTATNGNSNAAGIVATCTIAAGGGMTIENCHNVGDMTTANGASFGNGLFH RTDGKISQITMKSCFSLNEDGKSQSSGSDSYISGGSSSYKNLSASEMKNTSSFTNWNFSTVWEMGSEYPTLQGLLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40306; Mature: 40175
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPISTELVNNTYNGNFTGVYEATKGDIIDTGTGRSSEQYKIKNWTLNKSSNTNCGLFAS CCCCCCHHHCCCCCCCEEEEEECCCCCEEECCCCCCCCCEEEEEEEECCCCCCCCCEEEE IGAEGIVRNVCIENVVIKAKAKVGAIAGNCSGKIISCHTTGNEGSISTAATTDAEIYLGG CCCHHHHHHHHHHCEEEEECCCEEEEEECCCCCEEEEEECCCCCCEEEEECCCCEEEEEE IVGYLTEKGEVSYCSNTAAIEGTAGCVGGVVGIIMRDANNAPAVAYCTNKANVVCSSKSP EEEEEECCCCEEECCCCCEECCCCHHHHHEEEEEEECCCCCCEEEEECCCCEEEECCCCC VGGVVGSIAGAAGNDLIKVTGCANSGEISGTQANNQVGGIVGRATIDTEISQSYNTGSIT CCHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCHHHCCCCCCCEE AMGSASGIIARMGGTNAIVRDCYNTGAIKSTGTATNGNSNAAGIVATCTIAAGGGMTIEN EECCCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHH CHNVGDMTTANGASFGNGLFHRTDGKISQITMKSCFSLNEDGKSQSSGSDSYISGGSSSY HCCCCCCCCCCCCCCCCCCEECCCCCEEEEEHHHHHCCCCCCCCCCCCCCCEECCCCCCC KNLSASEMKNTSSFTNWNFSTVWEMGSEYPTLQGLLK CCCCHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHCC >Mature Secondary Structure APISTELVNNTYNGNFTGVYEATKGDIIDTGTGRSSEQYKIKNWTLNKSSNTNCGLFAS CCCCCHHHCCCCCCCEEEEEECCCCCEEECCCCCCCCCEEEEEEEECCCCCCCCCEEEE IGAEGIVRNVCIENVVIKAKAKVGAIAGNCSGKIISCHTTGNEGSISTAATTDAEIYLGG CCCHHHHHHHHHHCEEEEECCCEEEEEECCCCCEEEEEECCCCCCEEEEECCCCEEEEEE IVGYLTEKGEVSYCSNTAAIEGTAGCVGGVVGIIMRDANNAPAVAYCTNKANVVCSSKSP EEEEEECCCCEEECCCCCEECCCCHHHHHEEEEEEECCCCCCEEEEECCCCEEEECCCCC VGGVVGSIAGAAGNDLIKVTGCANSGEISGTQANNQVGGIVGRATIDTEISQSYNTGSIT CCHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCHHHCCCCCCCEE AMGSASGIIARMGGTNAIVRDCYNTGAIKSTGTATNGNSNAAGIVATCTIAAGGGMTIEN EECCCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHH CHNVGDMTTANGASFGNGLFHRTDGKISQITMKSCFSLNEDGKSQSSGSDSYISGGSSSY HCCCCCCCCCCCCCCCCCCEECCCCCEEEEEHHHHHCCCCCCCCCCCCCCCEECCCCCCC KNLSASEMKNTSSFTNWNFSTVWEMGSEYPTLQGLLK CCCCHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA