| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is cslA [H]
Identifier: 29348373
GI number: 29348373
Start: 3734427
End: 3736592
Strand: Reverse
Name: cslA [H]
Synonym: BT_2964
Alternate gene names: 29348373
Gene position: 3736592-3734427 (Counterclockwise)
Preceding gene: 29348374
Following gene: 29348372
Centisome position: 59.69
GC content: 41.41
Gene sequence:
>2166_bases ATGAAAATGATACATTATAAAATCATAATTCTATTATTGCTGGCATGGAGTCCTTGGGATTTGGTTTTACCTTGTCCCTC TATTTGTACGTCTGCCTTGCAGAATGATGATTTTGATATTCTAATGAAGAAGATTCGGGATGGGGTTGCAGAAAATCCGA ATATTGATAAAGCTCTGGAACTGTATGATGACGTCCAAGGATGTTTTATAGATATAGATTATGCCCGCCGGGATCGTACT AACTGGATGCCACTTATTCATGTGGATCGGTTGTATGACTTTGTATTTGCTTATACTCATCCAAAGAATTCCTATTATCA GAATGAAGATTTGTATCATAAGATAGTAAAGGGCTTGGAGTATTGGCATCATCGTAATCCACATTGTAATAACTGGTGGT ATAATCAGATTGCCGAGCCGCAGAAACTCGGTATTCTGCTTATTCAGATGCGTGTTGGTAAAAGGCAGATTCCGGAAGTA TTGGAGACAAAGGTCTTGCAACGTATGCGGAAGGACGGCGGACATCCTGCCAGATGGACTGGAGCCAACCGGACGGATAT TGCTTTACATTGGATTTATAGAGCTTGCCTTCAGAAGAATGATGTTGACTTGAAAACGGCTGTTGAGAATGTTTATAGTC CTCTATCATATACTGTGAAAGAAGGATTTCAGCATGACAACAGCTATTTTCAGCATGGCGTGCAGCTTTATATCGGTGGT TATGGAGACGAAATACTGAAAGGAGTAACACAGGTAGCTCTATATACTAAAGGAACGAAATATGCATTGGATGATGAGAG AATACAATTTCTGAGGCATTTTATGTGCGGCACTTATTATCAGGTTATACGTGGACAATACATGCTTTTCGATGTATTGG GAAGAGGAGTGAGCCGTAATAATGCTACCCAAAAGAGTCATGCCGCCTTGTTTGCCAAACGAATGCTGGAGCTCGCCCCG GCACATATTGATGAATACAATGCGATTATAGCCAGATTGGAAGGCAAGAAGTCCGCCAACTATGGAATAAAGCCGTTACA CACTCATTATTTCAGAGGAGACTATGCTCTTCATGTCCGTCCCCACTATACATTTGACGTTCGTATGGTTTCCAATCGTA CCATGCGATGCGAATATGGGAATGGTGAAAATCTGAAAACCTATTTTATGTCCGACGGATGTACAAACATCGTGACCGAA GGGGACGAGTACGCCCGCATCTTTCCGGTATGGAACTGGAATCGTATTCCTGGAGTGACTGCTCCTCAACTGGATACCAT TCCACGAACTGTAATTGATTGGCAAACGAAGGGAACTTCCGTATTTGCAGGAGGAGTCTCTGATAGTCTTTATGGCGTAT CTGTTTATTCATATCTTGATACCTATGCTGATATAAATACCGCAGCTAAAAAGTCCTGGTTCTTTTTCGATGATGAAATC ATTTGTTTGGGAGCGGGGGTTAATTCGACAGCCGGTGTACCGGTATGTACTACTATCAATCAATGTTTGCTTTCGAAAAA GGAGGTCATATTGTCACAAAGTAAGAAGCAGTCGATGGTGAAAGAAGGAGATTTCGTCTATGATTCTCCCGAATGGGTAT TGCACAATGGAATTGGTTATGTCTTTCCCGCCGGCGGAAATCTCTTTTTGAGCAAGAAGATACAGACGGGATCGTGGTAC AGCATTAATCATACTGAATCTAAAAATGAGCAGCAGCAAGAGGTCTTTACTTTGGGATTTAATCATGGTTGTAATCCTCG GAATGCTACCTATGCCTATATCGTGGTGCCTGGGATTCATTCTGCCCGCAAGATGAATAACTACAGGAAGAGTCCCGTCG AAATTCTGGCGAATACGGATTCTATGCAGATAGTGAGGCATACGAAATTGGGAATATGGCAAATGGTATTTTATAAAGAG GGTACATTCCGTAACGGAGAGCTTTCTGTAAGTGTGGATAAAGCCTGTGCATTGATGATTAAGGATGGACACAGTGGTAA TGCCGAACTGCATATTGCTGATCCTGGGCAGACACAATCTTGTATTAAAGTTGAATTGCTGATTCCTGAAATATCCAGCG AGCGAAAGACTGTTTTATGTGATTTTAGAAATACCGGTATCTATGCCGGTGCATCCAAAGCATATAAATTAAAAAATATA TTATGA
Upstream 100 bases:
>100_bases GAGAAGGTGTGTCAAAAGTAACTAAGCTCTCCTCCTTCAAGAAGGGAATTTAGTTACTTTTGACATACCCCCTTATTCTC CAAATGATAAACATGCATAT
Downstream 100 bases:
>100_bases AGAAATTACTTTTGATTCTTTTTCTAAGCATAGCTTATTTATGCACGACACATGCACAATCGTTTACTAAACTCGAAGTG AAGCAATCGATGCGTAGGGT
Product: chondroitinase AC
Products: NA
Alternate protein names: Chondroitin sulfate AC lyase; Chondroitin-AC eliminase; Chondroitin-AC lyase [H]
Number of amino acids: Translated: 721; Mature: 721
Protein sequence:
>721_residues MKMIHYKIIILLLLAWSPWDLVLPCPSICTSALQNDDFDILMKKIRDGVAENPNIDKALELYDDVQGCFIDIDYARRDRT NWMPLIHVDRLYDFVFAYTHPKNSYYQNEDLYHKIVKGLEYWHHRNPHCNNWWYNQIAEPQKLGILLIQMRVGKRQIPEV LETKVLQRMRKDGGHPARWTGANRTDIALHWIYRACLQKNDVDLKTAVENVYSPLSYTVKEGFQHDNSYFQHGVQLYIGG YGDEILKGVTQVALYTKGTKYALDDERIQFLRHFMCGTYYQVIRGQYMLFDVLGRGVSRNNATQKSHAALFAKRMLELAP AHIDEYNAIIARLEGKKSANYGIKPLHTHYFRGDYALHVRPHYTFDVRMVSNRTMRCEYGNGENLKTYFMSDGCTNIVTE GDEYARIFPVWNWNRIPGVTAPQLDTIPRTVIDWQTKGTSVFAGGVSDSLYGVSVYSYLDTYADINTAAKKSWFFFDDEI ICLGAGVNSTAGVPVCTTINQCLLSKKEVILSQSKKQSMVKEGDFVYDSPEWVLHNGIGYVFPAGGNLFLSKKIQTGSWY SINHTESKNEQQQEVFTLGFNHGCNPRNATYAYIVVPGIHSARKMNNYRKSPVEILANTDSMQIVRHTKLGIWQMVFYKE GTFRNGELSVSVDKACALMIKDGHSGNAELHIADPGQTQSCIKVELLIPEISSERKTVLCDFRNTGIYAGASKAYKLKNI L
Sequences:
>Translated_721_residues MKMIHYKIIILLLLAWSPWDLVLPCPSICTSALQNDDFDILMKKIRDGVAENPNIDKALELYDDVQGCFIDIDYARRDRT NWMPLIHVDRLYDFVFAYTHPKNSYYQNEDLYHKIVKGLEYWHHRNPHCNNWWYNQIAEPQKLGILLIQMRVGKRQIPEV LETKVLQRMRKDGGHPARWTGANRTDIALHWIYRACLQKNDVDLKTAVENVYSPLSYTVKEGFQHDNSYFQHGVQLYIGG YGDEILKGVTQVALYTKGTKYALDDERIQFLRHFMCGTYYQVIRGQYMLFDVLGRGVSRNNATQKSHAALFAKRMLELAP AHIDEYNAIIARLEGKKSANYGIKPLHTHYFRGDYALHVRPHYTFDVRMVSNRTMRCEYGNGENLKTYFMSDGCTNIVTE GDEYARIFPVWNWNRIPGVTAPQLDTIPRTVIDWQTKGTSVFAGGVSDSLYGVSVYSYLDTYADINTAAKKSWFFFDDEI ICLGAGVNSTAGVPVCTTINQCLLSKKEVILSQSKKQSMVKEGDFVYDSPEWVLHNGIGYVFPAGGNLFLSKKIQTGSWY SINHTESKNEQQQEVFTLGFNHGCNPRNATYAYIVVPGIHSARKMNNYRKSPVEILANTDSMQIVRHTKLGIWQMVFYKE GTFRNGELSVSVDKACALMIKDGHSGNAELHIADPGQTQSCIKVELLIPEISSERKTVLCDFRNTGIYAGASKAYKLKNI L >Mature_721_residues MKMIHYKIIILLLLAWSPWDLVLPCPSICTSALQNDDFDILMKKIRDGVAENPNIDKALELYDDVQGCFIDIDYARRDRT NWMPLIHVDRLYDFVFAYTHPKNSYYQNEDLYHKIVKGLEYWHHRNPHCNNWWYNQIAEPQKLGILLIQMRVGKRQIPEV LETKVLQRMRKDGGHPARWTGANRTDIALHWIYRACLQKNDVDLKTAVENVYSPLSYTVKEGFQHDNSYFQHGVQLYIGG YGDEILKGVTQVALYTKGTKYALDDERIQFLRHFMCGTYYQVIRGQYMLFDVLGRGVSRNNATQKSHAALFAKRMLELAP AHIDEYNAIIARLEGKKSANYGIKPLHTHYFRGDYALHVRPHYTFDVRMVSNRTMRCEYGNGENLKTYFMSDGCTNIVTE GDEYARIFPVWNWNRIPGVTAPQLDTIPRTVIDWQTKGTSVFAGGVSDSLYGVSVYSYLDTYADINTAAKKSWFFFDDEI ICLGAGVNSTAGVPVCTTINQCLLSKKEVILSQSKKQSMVKEGDFVYDSPEWVLHNGIGYVFPAGGNLFLSKKIQTGSWY SINHTESKNEQQQEVFTLGFNHGCNPRNATYAYIVVPGIHSARKMNNYRKSPVEILANTDSMQIVRHTKLGIWQMVFYKE GTFRNGELSVSVDKACALMIKDGHSGNAELHIADPGQTQSCIKVELLIPEISSERKTVLCDFRNTGIYAGASKAYKLKNI L
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the polysaccharide lyase 8 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008929 - InterPro: IPR011013 - InterPro: IPR014718 - InterPro: IPR011071 - InterPro: IPR012970 - InterPro: IPR004103 - InterPro: IPR003159 - InterPro: IPR012329 [H]
Pfam domain/function: PF02278 Lyase_8; PF02884 Lyase_8_C; PF08124 Lyase_8_N [H]
EC number: =4.2.2.5 [H]
Molecular weight: Translated: 82455; Mature: 82455
Theoretical pI: Translated: 8.34; Mature: 8.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMIHYKIIILLLLAWSPWDLVLPCPSICTSALQNDDFDILMKKIRDGVAENPNIDKALE CCCHHHHHHHHHHHHCCCCCEEECCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHH LYDDVQGCFIDIDYARRDRTNWMPLIHVDRLYDFVFAYTHPKNSYYQNEDLYHKIVKGLE HHHCCCEEEEEEEHHHCCCCCCCCEEEHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHH YWHHRNPHCNNWWYNQIAEPQKLGILLIQMRVGKRQIPEVLETKVLQRMRKDGGHPARWT HHHCCCCCCCCCHHHHCCCCHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEC GANRTDIALHWIYRACLQKNDVDLKTAVENVYSPLSYTVKEGFQHDNSYFQHGVQLYIGG CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCHHHHCCEEEEECC YGDEILKGVTQVALYTKGTKYALDDERIQFLRHFMCGTYYQVIRGQYMLFDVLGRGVSRN CHHHHHHHHHHHHEEECCCCEECCHHHHHHHHHHHHHHHHHHHCCCHHEEHHHCCCCCCC NATQKSHAALFAKRMLELAPAHIDEYNAIIARLEGKKSANYGIKPLHTHYFRGDYALHVR CCCHHHHHHHHHHHHHHHCCCHHHHHHHEEEEECCCCCCCCCCCCCCCEEECCCEEEEEE PHYTFDVRMVSNRTMRCEYGNGENLKTYFMSDGCTNIVTEGDEYARIFPVWNWNRIPGVT CCEEEEEEEECCCEEEEECCCCCCEEEEEECCCCCHHHCCCCCCEEEEEEECCCCCCCCC APQLDTIPRTVIDWQTKGTSVFAGGVSDSLYGVSVYSYLDTYADINTAAKKSWFFFDDEI CCCCCCCCCHHEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCHHHCCCEEEECCCE ICLGAGVNSTAGVPVCTTINQCLLSKKEVILSQSKKQSMVKEGDFVYDSPEWVLHNGIGY EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEECCCEE VFPAGGNLFLSKKIQTGSWYSINHTESKNEQQQEVFTLGFNHGCNPRNATYAYIVVPGIH EEECCCCEEEEEEECCCCEEEECCCCCCCHHHHHHEEEECCCCCCCCCCEEEEEEECCCH SARKMNNYRKSPVEILANTDSMQIVRHTKLGIWQMVFYKEGTFRNGELSVSVDKACALMI HHHHHHHCCCCCCEEEECCCCCEEHHHHHCCEEEEEEEECCCCCCCEEEEECCCEEEEEE KDGHSGNAELHIADPGQTQSCIKVELLIPEISSERKTVLCDFRNTGIYAGASKAYKLKNI ECCCCCCCEEEEECCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCEECCCCCCCHHHCC L C >Mature Secondary Structure MKMIHYKIIILLLLAWSPWDLVLPCPSICTSALQNDDFDILMKKIRDGVAENPNIDKALE CCCHHHHHHHHHHHHCCCCCEEECCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHH LYDDVQGCFIDIDYARRDRTNWMPLIHVDRLYDFVFAYTHPKNSYYQNEDLYHKIVKGLE HHHCCCEEEEEEEHHHCCCCCCCCEEEHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHH YWHHRNPHCNNWWYNQIAEPQKLGILLIQMRVGKRQIPEVLETKVLQRMRKDGGHPARWT HHHCCCCCCCCCHHHHCCCCHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEC GANRTDIALHWIYRACLQKNDVDLKTAVENVYSPLSYTVKEGFQHDNSYFQHGVQLYIGG CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCHHHHCCEEEEECC YGDEILKGVTQVALYTKGTKYALDDERIQFLRHFMCGTYYQVIRGQYMLFDVLGRGVSRN CHHHHHHHHHHHHEEECCCCEECCHHHHHHHHHHHHHHHHHHHCCCHHEEHHHCCCCCCC NATQKSHAALFAKRMLELAPAHIDEYNAIIARLEGKKSANYGIKPLHTHYFRGDYALHVR CCCHHHHHHHHHHHHHHHCCCHHHHHHHEEEEECCCCCCCCCCCCCCCEEECCCEEEEEE PHYTFDVRMVSNRTMRCEYGNGENLKTYFMSDGCTNIVTEGDEYARIFPVWNWNRIPGVT CCEEEEEEEECCCEEEEECCCCCCEEEEEECCCCCHHHCCCCCCEEEEEEECCCCCCCCC APQLDTIPRTVIDWQTKGTSVFAGGVSDSLYGVSVYSYLDTYADINTAAKKSWFFFDDEI CCCCCCCCCHHEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCHHHCCCEEEECCCE ICLGAGVNSTAGVPVCTTINQCLLSKKEVILSQSKKQSMVKEGDFVYDSPEWVLHNGIGY EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEECCCEE VFPAGGNLFLSKKIQTGSWYSINHTESKNEQQQEVFTLGFNHGCNPRNATYAYIVVPGIH EEECCCCEEEEEEECCCCEEEECCCCCCCHHHHHHEEEECCCCCCCCCCEEEEEEECCCH SARKMNNYRKSPVEILANTDSMQIVRHTKLGIWQMVFYKEGTFRNGELSVSVDKACALMI HHHHHHHCCCCCCEEEECCCCCEEHHHHHCCEEEEEEEECCCCCCCEEEEECCCEEEEEE KDGHSGNAELHIADPGQTQSCIKVELLIPEISSERKTVLCDFRNTGIYAGASKAYKLKNI ECCCCCCCEEEEECCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCEECCCCCCCHHHCC L C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10618199; 10329169; 11327856 [H]