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The map label for this gene is 29348270

Identifier: 29348270

GI number: 29348270

Start: 3579467

End: 3580657

Strand: Reverse

Name: 29348270

Synonym: BT_2861

Alternate gene names: NA

Gene position: 3580657-3579467 (Counterclockwise)

Preceding gene: 29348271

Following gene: 29348269

Centisome position: 57.2

GC content: 43.83

Gene sequence:

>1191_bases
ATGAGAAAAGTAATTGTTCTATCGGCCTTGTTGCTGATAACAGGAATGAGTGTTTATGCACAAGAGGACTACTCTAAATC
TTTAAAAACGACAACTACAATCGTAGAAAATGCTGATAAATATAAAGTAGAAACCAATCGCTTTTGGAGCAACTGGTTTG
TAACTGCCGGTGGTGGCGGACTGATCTTTTTCGGTGACCATAATATGCAGATGAAATTTGGCGACCGTCTGAGTCCGGCA
TTGGACATCGGTTTTGGAAAGTGGTTTACCCCCGGCATCGGTATACGCTTCATGTATAGCGGACTGACTATCAAAGGTGC
TACACAGAACGGCAGTCACTCTACCGGAAAAGTGTACGATGCTTCACAATGGCTGGACGAACAGAAATTCGACTTTATGA
ATATTCATGGAGACGTGCTGTTCAATGCCTCGAATCTGCTTTGTGGTTATAATGAAAAACGTTTTTGGTCTGTAACTCCC
TATGTCGGTTTAGGCTGGATACTCACATGGGAAAGTCCGCGTGCACGTAACTTCAATGCCAGTATCGGTCTGATCAACTC
GTTTCGTCTGAGTTCTGCGTTCGACTTGAATCTGGATGTGCGTGGTACTGCGACAAAGGATGAGTTTGACGGTGAACGTG
GCGGGCGTAAAGAAGAAGGATTATTGTCCGTAACAGTAGGAGTTACTTATAAATTCCCACGGCGTACATGGGGGCGCAGC
ACTGTCAAGACCATTACCTTTAGTGATGAAGAACTACGTCTGATGCGCGAACAACTGAAAGCGATGAATGACGAGAACAA
TCGTCTGAAAGACGAATTAGCAACTTCCAATAAGGTTACGGAAAGAGTGGTGGAAACGAATATCCTCTCTGCTCCTTATC
TGGTCACTTTCCAGATATCAAGGTATGCTCTTAGCAATGAAGCTCGTGTAAATATCGGATTTCAGGCTAAGATAATGAAG
GAAAACAAGAATGCTGTCTATACGATTATCGGTTATGCCGATAAGGGTACAGGGACTAAGGAGTTTAACCAGTTTTTGAG
CAAGGCTCGTGCGGAAGCAGTCTACAACTGTCTGGTCAATGAGTTCGGAGTACCGGCATCGCAACTGAAAATAACTTATG
AAGGTGGTGTGGACAATATGTTCTATGATGATCCGAGAGTAAGCCGTGCAGTGATAACGGTGATTAAATAA

Upstream 100 bases:

>100_bases
GAGAAGGTTATCGGATTTTATGTGAACGATAAACTGAAAAAAAAGCCCCAACTTTGCAGTTGGAACTTGGTATATTGAAT
TTTAATGAAAAGAATCACTT

Downstream 100 bases:

>100_bases
ACCCTTTTACATAAATATGGATGAGATGAGATAAAAAACACACTTATAAAACAATTTGTAATTAGTTGAAAGATGCATAA
GCATCTATAAATCTCATGGG

Product: putative outer membrane protein

Products: NA

Alternate protein names: Omp40; PG33 [H]

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MRKVIVLSALLLITGMSVYAQEDYSKSLKTTTTIVENADKYKVETNRFWSNWFVTAGGGGLIFFGDHNMQMKFGDRLSPA
LDIGFGKWFTPGIGIRFMYSGLTIKGATQNGSHSTGKVYDASQWLDEQKFDFMNIHGDVLFNASNLLCGYNEKRFWSVTP
YVGLGWILTWESPRARNFNASIGLINSFRLSSAFDLNLDVRGTATKDEFDGERGGRKEEGLLSVTVGVTYKFPRRTWGRS
TVKTITFSDEELRLMREQLKAMNDENNRLKDELATSNKVTERVVETNILSAPYLVTFQISRYALSNEARVNIGFQAKIMK
ENKNAVYTIIGYADKGTGTKEFNQFLSKARAEAVYNCLVNEFGVPASQLKITYEGGVDNMFYDDPRVSRAVITVIK

Sequences:

>Translated_396_residues
MRKVIVLSALLLITGMSVYAQEDYSKSLKTTTTIVENADKYKVETNRFWSNWFVTAGGGGLIFFGDHNMQMKFGDRLSPA
LDIGFGKWFTPGIGIRFMYSGLTIKGATQNGSHSTGKVYDASQWLDEQKFDFMNIHGDVLFNASNLLCGYNEKRFWSVTP
YVGLGWILTWESPRARNFNASIGLINSFRLSSAFDLNLDVRGTATKDEFDGERGGRKEEGLLSVTVGVTYKFPRRTWGRS
TVKTITFSDEELRLMREQLKAMNDENNRLKDELATSNKVTERVVETNILSAPYLVTFQISRYALSNEARVNIGFQAKIMK
ENKNAVYTIIGYADKGTGTKEFNQFLSKARAEAVYNCLVNEFGVPASQLKITYEGGVDNMFYDDPRVSRAVITVIK
>Mature_396_residues
MRKVIVLSALLLITGMSVYAQEDYSKSLKTTTTIVENADKYKVETNRFWSNWFVTAGGGGLIFFGDHNMQMKFGDRLSPA
LDIGFGKWFTPGIGIRFMYSGLTIKGATQNGSHSTGKVYDASQWLDEQKFDFMNIHGDVLFNASNLLCGYNEKRFWSVTP
YVGLGWILTWESPRARNFNASIGLINSFRLSSAFDLNLDVRGTATKDEFDGERGGRKEEGLLSVTVGVTYKFPRRTWGRS
TVKTITFSDEELRLMREQLKAMNDENNRLKDELATSNKVTERVVETNILSAPYLVTFQISRYALSNEARVNIGFQAKIMK
ENKNAVYTIIGYADKGTGTKEFNQFLSKARAEAVYNCLVNEFGVPASQLKITYEGGVDNMFYDDPRVSRAVITVIK

Specific function: May have porin activity and function in peptidoglycan binding [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 44626; Mature: 44626

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKVIVLSALLLITGMSVYAQEDYSKSLKTTTTIVENADKYKVETNRFWSNWFVTAGGGG
CCHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEEEEEECCCE
LIFFGDHNMQMKFGDRLSPALDIGFGKWFTPGIGIRFMYSGLTIKGATQNGSHSTGKVYD
EEEECCCCEEEEECCCCCCEEEECCCCCCCCCCCEEEEEECEEEEECCCCCCCCCCEEEE
ASQWLDEQKFDFMNIHGDVLFNASNLLCGYNEKRFWSVTPYVGLGWILTWESPRARNFNA
HHHHCCCCCCCEEEECCEEEEECCCEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCCC
SIGLINSFRLSSAFDLNLDVRGTATKDEFDGERGGRKEEGLLSVTVGVTYKFPRRTWGRS
EEEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCC
TVKTITFSDEELRLMREQLKAMNDENNRLKDELATSNKVTERVVETNILSAPYLVTFQIS
EEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEEE
RYALSNEARVNIGFQAKIMKENKNAVYTIIGYADKGTGTKEFNQFLSKARAEAVYNCLVN
EEEECCCCEEEECEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
EFGVPASQLKITYEGGVDNMFYDDPRVSRAVITVIK
HHCCCHHHEEEEEECCCCCCCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MRKVIVLSALLLITGMSVYAQEDYSKSLKTTTTIVENADKYKVETNRFWSNWFVTAGGGG
CCHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEEEEEECCCE
LIFFGDHNMQMKFGDRLSPALDIGFGKWFTPGIGIRFMYSGLTIKGATQNGSHSTGKVYD
EEEECCCCEEEEECCCCCCEEEECCCCCCCCCCCEEEEEECEEEEECCCCCCCCCCEEEE
ASQWLDEQKFDFMNIHGDVLFNASNLLCGYNEKRFWSVTPYVGLGWILTWESPRARNFNA
HHHHCCCCCCCEEEECCEEEEECCCEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCCC
SIGLINSFRLSSAFDLNLDVRGTATKDEFDGERGGRKEEGLLSVTVGVTYKFPRRTWGRS
EEEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCC
TVKTITFSDEELRLMREQLKAMNDENNRLKDELATSNKVTERVVETNILSAPYLVTFQIS
EEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEEE
RYALSNEARVNIGFQAKIMKENKNAVYTIIGYADKGTGTKEFNQFLSKARAEAVYNCLVN
EEEECCCCEEEECEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
EFGVPASQLKITYEGGVDNMFYDDPRVSRAVITVIK
HHCCCHHHEEEEEECCCCCCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11457538; 12949112; 11532011 [H]