| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is aga [H]
Identifier: 29348260
GI number: 29348260
Start: 3557328
End: 3559493
Strand: Reverse
Name: aga [H]
Synonym: BT_2851
Alternate gene names: 29348260
Gene position: 3559493-3557328 (Counterclockwise)
Preceding gene: 29348261
Following gene: 29348251
Centisome position: 56.86
GC content: 45.8
Gene sequence:
>2166_bases ATGTATATCATGAAAGTGAGAATCCTTTTTTTAATCTGTTTCCTTAGTATCACCTGTCTTCTGAACGCGGCGGACAAGCC TGTCATTCAGATTCATACGGATAACAGTAGTCTGATCTTCCGCGTAGCCGACAACGGGCGGTTATACCAAAGCTATCTGG GCAAAAAGCTGAACCATGAGGCCGATATTTCTCATCTTCCGCAAGGGACGGAAGCCTATATCACCCACGGTATGGAGGAT TACTTTGAACCTGCCATTCATATCCTTCACAATGACGGTAATCCGTCACTTCTGTTGAAGTATGTCTCTCATGAGACGAA AGCGGTGTCGCAAGGAGTTAACGAAACCATTATCACCCTGGGAGATGATAAATATCCGGTTACGGTAAAGCTGCATTACG TCACTTATCCTGCCGAGGATATCATTAAAACCTATACGGAAATCAGCCATAAAGAGAAGAAGCCCGTAGTGCTTCACCAA TATGCCTCTAGTATGCTTCATCTGAACCGTGCGAAGTATTATCTGACTGAATTTTCGGGCGACTGGGCTCACGAAGCTAA TATCTCCGACCAGCCGTTGGAGTTTGGTAAAAAAGTGCTCGATACCAAACTGGGCGCCCGTGCCAACATGTTTACCCCTC CGTTCTTCCAGCTTTCTTTGGACCAGCTGGCTACGGAGAATTGTGGTGAAGTGCTGGTAGGTACATTGGGATGGACCGGC AATTTCCGCTTTACTTTCGAAGTGGACAACAAGAATGAATTGCGTATCATTTCGGGTATCAACCCTTATGCCTCTGAATA TTATCTTCCGGCAGGTGTCGTGTTCCGTACCCCCGATTTCTATTTTACCTATAGTGCAAATGGTAAGGGCAAAGCCAGCC GTAATTTCCACGATTGGGCACGCCGTTATCAGTTGAAGGACGGAGATGAAACCCGTATGACCCTGTTAAATAACTGGGAA GCGACTTATTTCGATTTTAATGAGGAGAAACTGATAGGACTGATTGGCGATGCCGCAGGGCTCGGAGTGGATATGTTCTT GCTGGACGACGGCTGGTTTGCCAATAAATATCCGCGCAGCAGCGATCATCAAGGCTTGGGAGACTGGGATGAAACGGCAG ATAAACTGCCCAACGGTATCGGGCGTCTGGTCGAAGAAGCTACAAAGAAGGGTATCAAGTTCGGTCTGTGGATAGAACCG GAAATGGTGAATCCGAAGAGTGAGCTTTATGAGAAACATAAAGACTGGGTCATCCATCTTCCCAATCGGGATGAATATTA CTTCCGTAATCAGTTGGTACTTGACCTGAGCAATCCGAAAGTGCAGGACTTCGTATTTGGAGTAGTAGATGATTTGATGA CTAAATATCCCGGTATTGCTTTCTTCAAATGGGATTGCAATAGCCCGATCACTAATATCTACTCTTCTTATCTGAAGGAG AAGCAGTCGCACTTGTACATCGACTATGTTCGCGGTCTGTATAATGTACTGGAACGTATTAAAACGAAGTACCCTGATCT GCCGATGATGCTTTGTTCGGGCGGTAGCGGGCGTATCGACTATGAAACGCTCAGATACTTCACTGAGTTCTGGCCGAGTG ATAACACGGACCCTATCGAACGTCTGTTTATCCAATGGGGATACTCTCAGCTTTTCCCGGCAAAAACTCTTTGTGCACAT GTCACTACATGGAATCATGATGCAAGTATCAAATTCCGTACAGACGTAGCAATGATGGGCAAACTTGGTTTTGATATCAA ATTGTCGGACCTCAATGATAATGAGAAGAAGTTCTGCCGTGATGCGGTCACCAACTACAATCATCTTAAACCGGTAGTGC TCGAAGGAGACATGTATCGGCTGGTATCTCCTTATAGCGGAAATCATACTTCCACACAATATGTGGGGAAAGATAAGAAG GGAGCTGTTGTCTTTGCATTCGATATTTATTCCCGTTATGGCGAGAAACTGTTGCCTGTCCGTCTGCAAGGACTGGACGC CGGTCGGCAGTACCGGGTGAAGGAAATCAATCTGATGCCGGGTACTAACTCTTCTCTGCAAGGAAACGGTGAGTTATTCT CTGGTGAATATCTGATGACGGTAGGACTGAATATATTTACAGGTCAGCGTCTGAACAGCAGAGTTATAGAAGTAGTTGCT GAATGA
Upstream 100 bases:
>100_bases CAACTGGTTCACTTACGACTTTAACTGATTTAGTTCGTTCACAACTTTAATTGATTCAGCCATCCACAATTTTAACGACT TGATTTATAAACCTTATTAA
Downstream 100 bases:
>100_bases CAGGACCGATGGAAATCCGTTAATCACTTGACAAACGCCTTTTATTGTTGTATATTTGTAGTTCCAAACCTGAACTGAAT AATATAAGAACGATAAATAA
Product: alpha-galactosidase
Products: NA
Alternate protein names: Melibiase [H]
Number of amino acids: Translated: 721; Mature: 721
Protein sequence:
>721_residues MYIMKVRILFLICFLSITCLLNAADKPVIQIHTDNSSLIFRVADNGRLYQSYLGKKLNHEADISHLPQGTEAYITHGMED YFEPAIHILHNDGNPSLLLKYVSHETKAVSQGVNETIITLGDDKYPVTVKLHYVTYPAEDIIKTYTEISHKEKKPVVLHQ YASSMLHLNRAKYYLTEFSGDWAHEANISDQPLEFGKKVLDTKLGARANMFTPPFFQLSLDQLATENCGEVLVGTLGWTG NFRFTFEVDNKNELRIISGINPYASEYYLPAGVVFRTPDFYFTYSANGKGKASRNFHDWARRYQLKDGDETRMTLLNNWE ATYFDFNEEKLIGLIGDAAGLGVDMFLLDDGWFANKYPRSSDHQGLGDWDETADKLPNGIGRLVEEATKKGIKFGLWIEP EMVNPKSELYEKHKDWVIHLPNRDEYYFRNQLVLDLSNPKVQDFVFGVVDDLMTKYPGIAFFKWDCNSPITNIYSSYLKE KQSHLYIDYVRGLYNVLERIKTKYPDLPMMLCSGGSGRIDYETLRYFTEFWPSDNTDPIERLFIQWGYSQLFPAKTLCAH VTTWNHDASIKFRTDVAMMGKLGFDIKLSDLNDNEKKFCRDAVTNYNHLKPVVLEGDMYRLVSPYSGNHTSTQYVGKDKK GAVVFAFDIYSRYGEKLLPVRLQGLDAGRQYRVKEINLMPGTNSSLQGNGELFSGEYLMTVGLNIFTGQRLNSRVIEVVA E
Sequences:
>Translated_721_residues MYIMKVRILFLICFLSITCLLNAADKPVIQIHTDNSSLIFRVADNGRLYQSYLGKKLNHEADISHLPQGTEAYITHGMED YFEPAIHILHNDGNPSLLLKYVSHETKAVSQGVNETIITLGDDKYPVTVKLHYVTYPAEDIIKTYTEISHKEKKPVVLHQ YASSMLHLNRAKYYLTEFSGDWAHEANISDQPLEFGKKVLDTKLGARANMFTPPFFQLSLDQLATENCGEVLVGTLGWTG NFRFTFEVDNKNELRIISGINPYASEYYLPAGVVFRTPDFYFTYSANGKGKASRNFHDWARRYQLKDGDETRMTLLNNWE ATYFDFNEEKLIGLIGDAAGLGVDMFLLDDGWFANKYPRSSDHQGLGDWDETADKLPNGIGRLVEEATKKGIKFGLWIEP EMVNPKSELYEKHKDWVIHLPNRDEYYFRNQLVLDLSNPKVQDFVFGVVDDLMTKYPGIAFFKWDCNSPITNIYSSYLKE KQSHLYIDYVRGLYNVLERIKTKYPDLPMMLCSGGSGRIDYETLRYFTEFWPSDNTDPIERLFIQWGYSQLFPAKTLCAH VTTWNHDASIKFRTDVAMMGKLGFDIKLSDLNDNEKKFCRDAVTNYNHLKPVVLEGDMYRLVSPYSGNHTSTQYVGKDKK GAVVFAFDIYSRYGEKLLPVRLQGLDAGRQYRVKEINLMPGTNSSLQGNGELFSGEYLMTVGLNIFTGQRLNSRVIEVVA E >Mature_721_residues MYIMKVRILFLICFLSITCLLNAADKPVIQIHTDNSSLIFRVADNGRLYQSYLGKKLNHEADISHLPQGTEAYITHGMED YFEPAIHILHNDGNPSLLLKYVSHETKAVSQGVNETIITLGDDKYPVTVKLHYVTYPAEDIIKTYTEISHKEKKPVVLHQ YASSMLHLNRAKYYLTEFSGDWAHEANISDQPLEFGKKVLDTKLGARANMFTPPFFQLSLDQLATENCGEVLVGTLGWTG NFRFTFEVDNKNELRIISGINPYASEYYLPAGVVFRTPDFYFTYSANGKGKASRNFHDWARRYQLKDGDETRMTLLNNWE ATYFDFNEEKLIGLIGDAAGLGVDMFLLDDGWFANKYPRSSDHQGLGDWDETADKLPNGIGRLVEEATKKGIKFGLWIEP EMVNPKSELYEKHKDWVIHLPNRDEYYFRNQLVLDLSNPKVQDFVFGVVDDLMTKYPGIAFFKWDCNSPITNIYSSYLKE KQSHLYIDYVRGLYNVLERIKTKYPDLPMMLCSGGSGRIDYETLRYFTEFWPSDNTDPIERLFIQWGYSQLFPAKTLCAH VTTWNHDASIKFRTDVAMMGKLGFDIKLSDLNDNEKKFCRDAVTNYNHLKPVVLEGDMYRLVSPYSGNHTSTQYVGKDKK GAVVFAFDIYSRYGEKLLPVRLQGLDAGRQYRVKEINLMPGTNSSLQGNGELFSGEYLMTVGLNIFTGQRLNSRVIEVVA E
Specific function: Unknown
COG id: COG3345
COG function: function code G; Alpha-galactosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 36 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR002252 - InterPro: IPR017853 - InterPro: IPR000111 [H]
Pfam domain/function: PF02065 Melibiase [H]
EC number: =3.2.1.22 [H]
Molecular weight: Translated: 82625; Mature: 82625
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: PS00512 ALPHA_GALACTOSIDASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYIMKVRILFLICFLSITCLLNAADKPVIQIHTDNSSLIFRVADNGRLYQSYLGKKLNHE CEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHCCCCCCC ADISHLPQGTEAYITHGMEDYFEPAIHILHNDGNPSLLLKYVSHETKAVSQGVNETIITL CCHHHCCCCCHHHHHCCHHHHHCCEEEEEECCCCHHEEEEEHHHHHHHHHCCCCCEEEEE GDDKYPVTVKLHYVTYPAEDIIKTYTEISHKEKKPVVLHQYASSMLHLNRAKYYLTEFSG CCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCEEEEEECCC DWAHEANISDQPLEFGKKVLDTKLGARANMFTPPFFQLSLDQLATENCGEVLVGTLGWTG CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHEEEHHHHHHCCCCCEEEEEECCCC NFRFTFEVDNKNELRIISGINPYASEYYLPAGVVFRTPDFYFTYSANGKGKASRNFHDWA CEEEEEEECCCCCEEEEECCCCHHHCEECCCCEEEECCCEEEEEECCCCCCCCCCHHHHH RRYQLKDGDETRMTLLNNWEATYFDFNEEKLIGLIGDAAGLGVDMFLLDDGWFANKYPRS HHCCCCCCCCCEEEEEECCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCC SDHQGLGDWDETADKLPNGIGRLVEEATKKGIKFGLWIEPEMVNPKSELYEKHKDWVIHL CCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCCEEEEC PNRDEYYFRNQLVLDLSNPKVQDFVFGVVDDLMTKYPGIAFFKWDCNSPITNIYSSYLKE CCCCCEEEECEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHH KQSHLYIDYVRGLYNVLERIKTKYPDLPMMLCSGGSGRIDYETLRYFTEFWPSDNTDPIE HHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCHHH RLFIQWGYSQLFPAKTLCAHVTTWNHDASIKFRTDVAMMGKLGFDIKLSDLNDNEKKFCR HHHHHCCHHHHCCHHHHHEEEEECCCCCEEEEECCHHHHCCCCCEEEEECCCCCHHHHHH DAVTNYNHLKPVVLEGDMYRLVSPYSGNHTSTQYVGKDKKGAVVFAFDIYSRYGEKLLPV HHHCCCCCCCEEEEECCEEEEECCCCCCCCCCEECCCCCCCCEEEEEEHHHHCCCEEEEE RLQGLDAGRQYRVKEINLMPGTNSSLQGNGELFSGEYLMTVGLNIFTGQRLNSRVIEVVA EEECCCCCCEEEEEEEEECCCCCCCCCCCCCEECCCEEEEECCEEEECCCHHHHHHHHCC E C >Mature Secondary Structure MYIMKVRILFLICFLSITCLLNAADKPVIQIHTDNSSLIFRVADNGRLYQSYLGKKLNHE CEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHCCCCCCC ADISHLPQGTEAYITHGMEDYFEPAIHILHNDGNPSLLLKYVSHETKAVSQGVNETIITL CCHHHCCCCCHHHHHCCHHHHHCCEEEEEECCCCHHEEEEEHHHHHHHHHCCCCCEEEEE GDDKYPVTVKLHYVTYPAEDIIKTYTEISHKEKKPVVLHQYASSMLHLNRAKYYLTEFSG CCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCEEEEEECCC DWAHEANISDQPLEFGKKVLDTKLGARANMFTPPFFQLSLDQLATENCGEVLVGTLGWTG CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHEEEHHHHHHCCCCCEEEEEECCCC NFRFTFEVDNKNELRIISGINPYASEYYLPAGVVFRTPDFYFTYSANGKGKASRNFHDWA CEEEEEEECCCCCEEEEECCCCHHHCEECCCCEEEECCCEEEEEECCCCCCCCCCHHHHH RRYQLKDGDETRMTLLNNWEATYFDFNEEKLIGLIGDAAGLGVDMFLLDDGWFANKYPRS HHCCCCCCCCCEEEEEECCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCC SDHQGLGDWDETADKLPNGIGRLVEEATKKGIKFGLWIEPEMVNPKSELYEKHKDWVIHL CCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCCEEEEC PNRDEYYFRNQLVLDLSNPKVQDFVFGVVDDLMTKYPGIAFFKWDCNSPITNIYSSYLKE CCCCCEEEECEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHH KQSHLYIDYVRGLYNVLERIKTKYPDLPMMLCSGGSGRIDYETLRYFTEFWPSDNTDPIE HHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCHHH RLFIQWGYSQLFPAKTLCAHVTTWNHDASIKFRTDVAMMGKLGFDIKLSDLNDNEKKFCR HHHHHCCHHHHCCHHHHHEEEEECCCCCEEEEECCHHHHCCCCCEEEEECCCCCHHHHHH DAVTNYNHLKPVVLEGDMYRLVSPYSGNHTSTQYVGKDKKGAVVFAFDIYSRYGEKLLPV HHHCCCCCCCEEEEECCEEEEECCCCCCCCCCEECCCCCCCCEEEEEEHHHHCCCEEEEE RLQGLDAGRQYRVKEINLMPGTNSSLQGNGELFSGEYLMTVGLNIFTGQRLNSRVIEVVA EEECCCCCCEEEEEEEEECCCCCCCCCCCCCEECCCEEEEECCEEEECCCHHHHHHHHCC E C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1649890; 1660918; 12397186 [H]