Definition Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome.
Accession NC_004663
Length 6,260,361

Click here to switch to the map view.

The map label for this gene is 29347978

Identifier: 29347978

GI number: 29347978

Start: 3205277

End: 3206509

Strand: Reverse

Name: 29347978

Synonym: BT_2568

Alternate gene names: NA

Gene position: 3206509-3205277 (Counterclockwise)

Preceding gene: 29347982

Following gene: 29347977

Centisome position: 51.22

GC content: 45.5

Gene sequence:

>1233_bases
ATGAAAATACAAACTGGAAGGGGAACAATACCTCTTATCACTTTAATAGCTATTTGGTCTATCTCGGCATTGACCTCTTT
GCCGGGGCTGGCTGTTTCGCCTATATTGGGCGACCTTACCAAAATCTTTCCGAAAGCGACCGACCTGGATATTCAGATGT
TGACTTCGCTGCCATCGTTGCTGATTATCCCTTTTATCCTTTTGGGTGGTAAGCTCACGGAAAAGGTTGATTTTGTCCGT
ATCCTGAAAATCGGACTCTGGCTCTTTGCAGCAAGCGGTATCTTGTATCTGATCTCCAACAAAATGTGGCAATTAATCGT
CGTGAGTGCCCTGCTGGGCATCGGCTCCGGACTGATTATTCCGCTGTCCACGGGATTAATCTCAAAATACTTTGTGGGTA
CTTACCGGGTGAAACAATTCGGATTGAGTTCTGCCATTACCAATTTTACATTGGTGATAGCTACTGCCGTGACCGGATAT
CTGGCGGAAGTCAGCTGGCATTTGCCGTTTTTGGTCTATCTGCTCCCTTTGATTTCTATTCTGCTGGTCGGTCACTTAAA
AGAGAGCCGGTCTGACGCCGCCGTCGAACCTTCTTCTCAAAGTACCGCGCCATCCGGACAAACGGCTGCCGCAGATACCG
GAGGAAGTAAATATGGAATCCATATCAGGCATCTGCTTCAGATCATGCTTTTCTACGGAGTGACGACTTTTATTGTGCTG
GCAGTCATATTCAACCTTTCTTTCCTGATGGAGAAACACCATTTCTCCAGTGGCAATTCGGGACTGATGATCTCGCTTTT
CTTTTTAGCGATTATGGCTCCGGGTTTCTGTCTGGACAAGATAGTGGATGAACTGAAAGAGCGTACCAAAGCATACAGCC
TCCTGTCTATGGCTGTGGGGCTGGCGCTGATCTGGATTGCCCCGATCGAATGGCTGATTATTCCGGGATGTATCCTGGTC
GGTTTGGGATATGGCATTATTCAGCCTATGCTGTATGATAAAACGACACATACGGCACTGCCTCAAAAGGCGACAATGGC
ATTGGCTTTTGTAATGATGATGAATTATCTCGCCATCTTGCTTTATCCTTTTATTATAGATTTTCTCCAAAATCTGTTTC
ATACCCAGTCGCAAGAGTTTCCTTTTGTCTTCAACTTGTTGATAACTATTGTCACATTCTTTTGGGCTTACCTGCGCCGC
GATACCTTTTTGTTTAACGATCAACTGAAATAA

Upstream 100 bases:

>100_bases
GTGTTTTTCACCCGTTTTTTGAATATTCACTGTTGCCTCATTTGAACTTTATAAGGTAATCATTGTTTTCATCAGACCTA
AACTTTTAACGAACCGGTAT

Downstream 100 bases:

>100_bases
AAAAAGATGAAGAATAAGAAACTGGAAGCCAATCTGAGTATGGCTGTATCAAAAATATTCAGCGGTTTGAATATGAATGC
CCTGAAGTATCTGCTTCCCC

Product: putative sugar transporter

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MKIQTGRGTIPLITLIAIWSISALTSLPGLAVSPILGDLTKIFPKATDLDIQMLTSLPSLLIIPFILLGGKLTEKVDFVR
ILKIGLWLFAASGILYLISNKMWQLIVVSALLGIGSGLIIPLSTGLISKYFVGTYRVKQFGLSSAITNFTLVIATAVTGY
LAEVSWHLPFLVYLLPLISILLVGHLKESRSDAAVEPSSQSTAPSGQTAAADTGGSKYGIHIRHLLQIMLFYGVTTFIVL
AVIFNLSFLMEKHHFSSGNSGLMISLFFLAIMAPGFCLDKIVDELKERTKAYSLLSMAVGLALIWIAPIEWLIIPGCILV
GLGYGIIQPMLYDKTTHTALPQKATMALAFVMMMNYLAILLYPFIIDFLQNLFHTQSQEFPFVFNLLITIVTFFWAYLRR
DTFLFNDQLK

Sequences:

>Translated_410_residues
MKIQTGRGTIPLITLIAIWSISALTSLPGLAVSPILGDLTKIFPKATDLDIQMLTSLPSLLIIPFILLGGKLTEKVDFVR
ILKIGLWLFAASGILYLISNKMWQLIVVSALLGIGSGLIIPLSTGLISKYFVGTYRVKQFGLSSAITNFTLVIATAVTGY
LAEVSWHLPFLVYLLPLISILLVGHLKESRSDAAVEPSSQSTAPSGQTAAADTGGSKYGIHIRHLLQIMLFYGVTTFIVL
AVIFNLSFLMEKHHFSSGNSGLMISLFFLAIMAPGFCLDKIVDELKERTKAYSLLSMAVGLALIWIAPIEWLIIPGCILV
GLGYGIIQPMLYDKTTHTALPQKATMALAFVMMMNYLAILLYPFIIDFLQNLFHTQSQEFPFVFNLLITIVTFFWAYLRR
DTFLFNDQLK
>Mature_410_residues
MKIQTGRGTIPLITLIAIWSISALTSLPGLAVSPILGDLTKIFPKATDLDIQMLTSLPSLLIIPFILLGGKLTEKVDFVR
ILKIGLWLFAASGILYLISNKMWQLIVVSALLGIGSGLIIPLSTGLISKYFVGTYRVKQFGLSSAITNFTLVIATAVTGY
LAEVSWHLPFLVYLLPLISILLVGHLKESRSDAAVEPSSQSTAPSGQTAAADTGGSKYGIHIRHLLQIMLFYGVTTFIVL
AVIFNLSFLMEKHHFSSGNSGLMISLFFLAIMAPGFCLDKIVDELKERTKAYSLLSMAVGLALIWIAPIEWLIIPGCILV
GLGYGIIQPMLYDKTTHTALPQKATMALAFVMMMNYLAILLYPFIIDFLQNLFHTQSQEFPFVFNLLITIVTFFWAYLRR
DTFLFNDQLK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45251; Mature: 45251

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA