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The map label for this gene is rpoE [C]

Identifier: 29347902

GI number: 29347902

Start: 3114715

End: 3115191

Strand: Reverse

Name: rpoE [C]

Synonym: BT_2492

Alternate gene names: 29347902

Gene position: 3115191-3114715 (Counterclockwise)

Preceding gene: 29347903

Following gene: 29347901

Centisome position: 49.76

GC content: 33.96

Gene sequence:

>477_bases
ATGAAAAAATTGGAAATAGAGTTTGAGCAAGTTGTGAAGCAATATAAAAATACAATTTACACTGTATGTTTTATGTTCTC
TAAAGACTCCCGGGAAGTGAACGATCTTTTTCAGGACGTGTTAGTTAATCTTTGGAAAGGTTTCGATACATTCAAAGGAG
AAAGTAATATAGGAACATGGATATGGCGTGTAAGTCTCAATACTTGCATTTCATCAGACAGGAAAAAGAAGATTGTTTCT
GTACCTCTGATTATGGGGATTGATCTGTTTGAAGATAGGGACGAAGATACAACACAGATAAAGATGTTGTATAACAGAAT
TAGTCGCCTGAAACATTTCGATAGGGCGATAGTGCTATTATGGCTTGAGAATTTCAGTTATGAGGAAATTGCAGCTATTG
TAGGAATTTCTGTGAAGAATGTTTCCGTTCGCTTATTTAGAATTAAAGAAGAATTAAAAAAAATGTCTAACAACTAG

Upstream 100 bases:

>100_bases
GTTGTTTCTCAAAAGTTGTATCTACAGGAAATAAAACTGGATATTCTGTAGTTTTTTGCGTTATATTGCGTCTAATGTAT
AGACGATTAATCAAAATAAG

Downstream 100 bases:

>100_bases
AAAATATATGGGTATGGAAGAATATATAGATACGATTGAACTTAAACAAATGAAAGAACAGATAGCTATTCTTAACAGCA
AGTTGGATGCGGAGGTCGTT

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor RpoE; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; DNA-Directed RNA Polymeracialized Sigma Subunit; ECF Family RNA Polymerase Sigma Factor; Sigma-; RNA Polymerase Sigma Factor SigW; RNA Polymerase ECF-Type Sigma Factor X; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma Factor AlgU; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-70 Factor; ECF Family RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Ecf-Type Sigma Factor; RNA Polymerase

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MKKLEIEFEQVVKQYKNTIYTVCFMFSKDSREVNDLFQDVLVNLWKGFDTFKGESNIGTWIWRVSLNTCISSDRKKKIVS
VPLIMGIDLFEDRDEDTTQIKMLYNRISRLKHFDRAIVLLWLENFSYEEIAAIVGISVKNVSVRLFRIKEELKKMSNN

Sequences:

>Translated_158_residues
MKKLEIEFEQVVKQYKNTIYTVCFMFSKDSREVNDLFQDVLVNLWKGFDTFKGESNIGTWIWRVSLNTCISSDRKKKIVS
VPLIMGIDLFEDRDEDTTQIKMLYNRISRLKHFDRAIVLLWLENFSYEEIAAIVGISVKNVSVRLFRIKEELKKMSNN
>Mature_158_residues
MKKLEIEFEQVVKQYKNTIYTVCFMFSKDSREVNDLFQDVLVNLWKGFDTFKGESNIGTWIWRVSLNTCISSDRKKKIVS
VPLIMGIDLFEDRDEDTTQIKMLYNRISRLKHFDRAIVLLWLENFSYEEIAAIVGISVKNVSVRLFRIKEELKKMSNN

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18715; Mature: 18715

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLEIEFEQVVKQYKNTIYTVCFMFSKDSREVNDLFQDVLVNLWKGFDTFKGESNIGTW
CCCCHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
IWRVSLNTCISSDRKKKIVSVPLIMGIDLFEDRDEDTTQIKMLYNRISRLKHFDRAIVLL
EEEEEHHHHHCCCHHHHHEECHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEE
WLENFSYEEIAAIVGISVKNVSVRLFRIKEELKKMSNN
EECCCCHHHHHHHHCCEECHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKLEIEFEQVVKQYKNTIYTVCFMFSKDSREVNDLFQDVLVNLWKGFDTFKGESNIGTW
CCCCHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
IWRVSLNTCISSDRKKKIVSVPLIMGIDLFEDRDEDTTQIKMLYNRISRLKHFDRAIVLL
EEEEEHHHHHCCCHHHHHEECHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEE
WLENFSYEEIAAIVGISVKNVSVRLFRIKEELKKMSNN
EECCCCHHHHHHHHCCEECHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA