Click here to switch to the map view.

The map label for this gene is xerD [C]

Identifier: 29347677

GI number: 29347677

Start: 2845418

End: 2846608

Strand: Reverse

Name: xerD [C]

Synonym: BT_2267

Alternate gene names: 29347677

Gene position: 2846608-2845418 (Counterclockwise)

Preceding gene: 29347680

Following gene: 29347674

Centisome position: 45.47

GC content: 37.11

Gene sequence:

>1191_bases
ATGAAGAAGATTAGTTACAGCCTTGTGTTTAACAGAAAAAAGAAGCTGAACAAAAAAGGAATGGCATTGGTACAAGTAGA
AGCTTACTTAAACAGGAGAAAAATGTACTTCTCAACCAGGGTGTACCTCAAACCAGACCAGTGGGACGTAAAACGTAGAA
TGGTAAAGAACCATCCTAATTCAGATGCATTAAATCGAATGCTATATGATTTTATAGCTGACATTGAGCAGAAAGAACTG
GGATTATGGCAACAGAGAAGATCGATATCCTTGGATTCGTTGAAAGACTCTATTGAAAAACCGGAAAATAATGGGAATTC
ATTTCTGACCTTTTTTAAAGAGGAAGTCAGCAACTCTTCTTTAAAAGAGAGCACCAGGCAGAATCATCTTTCCACTTTAG
AATTGCTGCAAGAGTATAAAAAGGACATTGTATTCACTGATTTGACATTCGAATTTGTGTCTTCATTTGATAATTATCTG
CAGTCCAAGGGGTATCATCTCAATACCATTGCCAAGCATATGAAGCATTTAAAACGATATGTGAATGTAGCTATAAATAA
AGAGTATATGGATATTCAGAAGTATGCTTTCAGAAAATATAAAATCAAAAGCATAGAAGGAAGTCATACGCACTTGTCGC
CGGAAGAGCTGAATAAAATGGAGGAGGTGAATCTGGAAGGGAAGTTTACGAAGTTACAAAAGTCAAAAGATGCCTTTTTA
TTTTGTTGTTACGCCGGTTTGCGGTACTCTGATTTTATAAATCTGACTGCCGCGAATATTGTCGAACTCCATCAGGAGAC
GTGGCTGATTTACAAATCTGTTAAAACAGGTATTGATGTGCGCCTTCCTTTATATTTATTATTTGAAGGTAAAGGACTGC
GGGTGTTGGAGACCTACAAAGACGATTTAAACGGATTCTTCAAGCTGAAAGATAACTCTAATGTGAATAAAGACTTGAAT
GCATTAGCCAAGCTGGCAGAAATAGACAAACGGATATCATTCCATACAGCCCGACATACAAACGCCACCTTATTGATATA
TAGTGGTGCAAATATAACGACTGTACAAAAGCTGCTGGGACACAAAAGTGTGAAGACAACTCAGGTATATGCAAATATCA
TGGACATGACTATTGTGCATGACCTTGAGAAAGCAGCCTATTCAAAATTAGCTAATAGACCAAAAAGCTAG

Upstream 100 bases:

>100_bases
ATTGAATTTTAATTTTTGCAGAAATTAATGCAGGTTCAACCTTAATTATAGCACAGAACTTAGTTTATTTTGTTCTTAGT
ATTAACTAAAAGACAATAGA

Downstream 100 bases:

>100_bases
GCAGTGATTGTCTGGAAATGTCCTGTTTTTAAGATTGGTTTCAACAGAGTTGATTCAAAATCTAACAATATGGCAGAAAT
AATGCATAAATCAATGTAAG

Product: integrase protein

Products: NA

Alternate protein names: Tyrosine Type Site-Specific Recombinase; Integrase Family Protein; Transposase; Site-Specific Recombinase; Phage Integrase Family Protein; Site-Specific Recombinase Phage Integrase Family; Bacteriophage Integrase; Phage Integrase; Integrase/Transposase; Mobilizable Transposon Int Protein; Mobilizable Transposon Protein Int Protein; Prophage; Mobilizable Transposon; Phage Integrase Family Site Specific Recombinase

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MKKISYSLVFNRKKKLNKKGMALVQVEAYLNRRKMYFSTRVYLKPDQWDVKRRMVKNHPNSDALNRMLYDFIADIEQKEL
GLWQQRRSISLDSLKDSIEKPENNGNSFLTFFKEEVSNSSLKESTRQNHLSTLELLQEYKKDIVFTDLTFEFVSSFDNYL
QSKGYHLNTIAKHMKHLKRYVNVAINKEYMDIQKYAFRKYKIKSIEGSHTHLSPEELNKMEEVNLEGKFTKLQKSKDAFL
FCCYAGLRYSDFINLTAANIVELHQETWLIYKSVKTGIDVRLPLYLLFEGKGLRVLETYKDDLNGFFKLKDNSNVNKDLN
ALAKLAEIDKRISFHTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANIMDMTIVHDLEKAAYSKLANRPKS

Sequences:

>Translated_396_residues
MKKISYSLVFNRKKKLNKKGMALVQVEAYLNRRKMYFSTRVYLKPDQWDVKRRMVKNHPNSDALNRMLYDFIADIEQKEL
GLWQQRRSISLDSLKDSIEKPENNGNSFLTFFKEEVSNSSLKESTRQNHLSTLELLQEYKKDIVFTDLTFEFVSSFDNYL
QSKGYHLNTIAKHMKHLKRYVNVAINKEYMDIQKYAFRKYKIKSIEGSHTHLSPEELNKMEEVNLEGKFTKLQKSKDAFL
FCCYAGLRYSDFINLTAANIVELHQETWLIYKSVKTGIDVRLPLYLLFEGKGLRVLETYKDDLNGFFKLKDNSNVNKDLN
ALAKLAEIDKRISFHTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANIMDMTIVHDLEKAAYSKLANRPKS
>Mature_396_residues
MKKISYSLVFNRKKKLNKKGMALVQVEAYLNRRKMYFSTRVYLKPDQWDVKRRMVKNHPNSDALNRMLYDFIADIEQKEL
GLWQQRRSISLDSLKDSIEKPENNGNSFLTFFKEEVSNSSLKESTRQNHLSTLELLQEYKKDIVFTDLTFEFVSSFDNYL
QSKGYHLNTIAKHMKHLKRYVNVAINKEYMDIQKYAFRKYKIKSIEGSHTHLSPEELNKMEEVNLEGKFTKLQKSKDAFL
FCCYAGLRYSDFINLTAANIVELHQETWLIYKSVKTGIDVRLPLYLLFEGKGLRVLETYKDDLNGFFKLKDNSNVNKDLN
ALAKLAEIDKRISFHTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANIMDMTIVHDLEKAAYSKLANRPKS

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46255; Mature: 46255

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKISYSLVFNRKKKLNKKGMALVQVEAYLNRRKMYFSTRVYLKPDQWDVKRRMVKNHPN
CCCEEEHHEECHHHHCCCCCCEEEEHHHHHCCHHEEEEEEEEECCCHHHHHHHHHHCCCC
SDALNRMLYDFIADIEQKELGLWQQRRSISLDSLKDSIEKPENNGNSFLTFFKEEVSNSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCH
LKESTRQNHLSTLELLQEYKKDIVFTDLTFEFVSSFDNYLQSKGYHLNTIAKHMKHLKRY
HHHHHHHHHHHHHHHHHHHHHCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VNVAINKEYMDIQKYAFRKYKIKSIEGSHTHLSPEELNKMEEVNLEGKFTKLQKSKDAFL
HHHHCCCHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCCEE
FCCYAGLRYSDFINLTAANIVELHQETWLIYKSVKTGIDVRLPLYLLFEGKGLRVLETYK
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEHHHHH
DDLNGFFKLKDNSNVNKDLNALAKLAEIDKRISFHTARHTNATLLIYSGANITTVQKLLG
HCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCEEEEEECCCCHHHHHHHHC
HKSVKTTQVYANIMDMTIVHDLEKAAYSKLANRPKS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKKISYSLVFNRKKKLNKKGMALVQVEAYLNRRKMYFSTRVYLKPDQWDVKRRMVKNHPN
CCCEEEHHEECHHHHCCCCCCEEEEHHHHHCCHHEEEEEEEEECCCHHHHHHHHHHCCCC
SDALNRMLYDFIADIEQKELGLWQQRRSISLDSLKDSIEKPENNGNSFLTFFKEEVSNSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCH
LKESTRQNHLSTLELLQEYKKDIVFTDLTFEFVSSFDNYLQSKGYHLNTIAKHMKHLKRY
HHHHHHHHHHHHHHHHHHHHHCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VNVAINKEYMDIQKYAFRKYKIKSIEGSHTHLSPEELNKMEEVNLEGKFTKLQKSKDAFL
HHHHCCCHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCCEE
FCCYAGLRYSDFINLTAANIVELHQETWLIYKSVKTGIDVRLPLYLLFEGKGLRVLETYK
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEHHHHH
DDLNGFFKLKDNSNVNKDLNALAKLAEIDKRISFHTARHTNATLLIYSGANITTVQKLLG
HCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCEEEEEECCCCHHHHHHHHC
HKSVKTTQVYANIMDMTIVHDLEKAAYSKLANRPKS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA