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The map label for this gene is fecI [C]

Identifier: 29347608

GI number: 29347608

Start: 2762259

End: 2762840

Strand: Reverse

Name: fecI [C]

Synonym: BT_2198

Alternate gene names: 29347608

Gene position: 2762840-2762259 (Counterclockwise)

Preceding gene: 29347609

Following gene: 29347607

Centisome position: 44.13

GC content: 42.44

Gene sequence:

>582_bases
ATGATACATTCTCTTCCATCTTCCGAACCCTTGACGGCACAAAAGCTTTTCTCAAAGCTTTATGTTTCCTACTATGCCCG
TTTGGTTCGTTTCGCTTCCCTTTATGTAGGAGCTATGGGAGACGCAGAGAATATAGTACAAGATTTTTTCCTCTATTTAT
GGGAACGTAAAGAGATACTTCCGGAACTGCAACAGCCCGATGCATATCTTTTCTCCGCTGTCAAGCATCGCTGTCTGAAC
TTCCTTCGTTCACAACTTTCTATAGTAGACCGCAGGCAGCCGCTTTCTGATATTATGGAGCAGGAGTTTAAACTGAAACT
TTATAGTCTGCAACTACTTGATGACTCTCAAATGTCGATAGATGAAGTAGAAAAACAGATCTGCCGTGCAATTGATAGCT
TACCGGAACGTTGCCGGGAAATATTTGTCATGAGTAAGCTGAAGGGTATGAAATATCGTGAAATAGCCGAATCCCTTGGC
ATTTCGCAGAATACGGTAGAAGGTCAAATGGCTATCGCTTTGAGGAAACTTCGGGAAGAATTGCGTCATTGTATGCCTTT
GCTGCTTCTATTGAGCGTATAA

Upstream 100 bases:

>100_bases
TTAATTGATTTGATCTGTATCGGTCATACAATAGGAATTTAAAGTCAGGCTTTGTCTTTGCTGTTTCTTTTGTTACCTTT
GTGCATCTAATATGAGGTTT

Downstream 100 bases:

>100_bases
GGATAAATCGCCTATGTATTGTCTTTGCTTCAGTCCATTCCATATACTTTAGTCAAGCTGAGTACTAATTTGCAGCTTAT
AATGAATGAATTTAGTTCCG

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma-H Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma-70 Factor; Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; ECF-Type RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-70 Factor; ECF Family Sigma Factor; Sigma-; Sigma-70 Region 2 Subfamily; ECF-Type RNA Polymerase; ECF Sigma Factor; RNA Polymerase Sigma-W Factor; RNA Polymerase ECF Sigma Factor; ECF-Type Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase ECF-Subfamily Sigma-70 Factor; ECF Sigma Factor FecI Family

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MIHSLPSSEPLTAQKLFSKLYVSYYARLVRFASLYVGAMGDAENIVQDFFLYLWERKEILPELQQPDAYLFSAVKHRCLN
FLRSQLSIVDRRQPLSDIMEQEFKLKLYSLQLLDDSQMSIDEVEKQICRAIDSLPERCREIFVMSKLKGMKYREIAESLG
ISQNTVEGQMAIALRKLREELRHCMPLLLLLSV

Sequences:

>Translated_193_residues
MIHSLPSSEPLTAQKLFSKLYVSYYARLVRFASLYVGAMGDAENIVQDFFLYLWERKEILPELQQPDAYLFSAVKHRCLN
FLRSQLSIVDRRQPLSDIMEQEFKLKLYSLQLLDDSQMSIDEVEKQICRAIDSLPERCREIFVMSKLKGMKYREIAESLG
ISQNTVEGQMAIALRKLREELRHCMPLLLLLSV
>Mature_193_residues
MIHSLPSSEPLTAQKLFSKLYVSYYARLVRFASLYVGAMGDAENIVQDFFLYLWERKEILPELQQPDAYLFSAVKHRCLN
FLRSQLSIVDRRQPLSDIMEQEFKLKLYSLQLLDDSQMSIDEVEKQICRAIDSLPERCREIFVMSKLKGMKYREIAESLG
ISQNTVEGQMAIALRKLREELRHCMPLLLLLSV

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22513; Mature: 22513

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHSLPSSEPLTAQKLFSKLYVSYYARLVRFASLYVGAMGDAENIVQDFFLYLWERKEIL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
PELQQPDAYLFSAVKHRCLNFLRSQLSIVDRRQPLSDIMEQEFKLKLYSLQLLDDSQMSI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCH
DEVEKQICRAIDSLPERCREIFVMSKLKGMKYREIAESLGISQNTVEGQMAIALRKLREE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LRHCMPLLLLLSV
HHHHHHHHHHHCC
>Mature Secondary Structure
MIHSLPSSEPLTAQKLFSKLYVSYYARLVRFASLYVGAMGDAENIVQDFFLYLWERKEIL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
PELQQPDAYLFSAVKHRCLNFLRSQLSIVDRRQPLSDIMEQEFKLKLYSLQLLDDSQMSI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCH
DEVEKQICRAIDSLPERCREIFVMSKLKGMKYREIAESLGISQNTVEGQMAIALRKLREE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LRHCMPLLLLLSV
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA