| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29347570
Identifier: 29347570
GI number: 29347570
Start: 2719301
End: 2720986
Strand: Reverse
Name: 29347570
Synonym: BT_2160
Alternate gene names: NA
Gene position: 2720986-2719301 (Counterclockwise)
Preceding gene: 29347571
Following gene: 29347569
Centisome position: 43.46
GC content: 37.96
Gene sequence:
>1686_bases ATGGATAAATCGCTTTTTTTTATCATCTTTGCTAATAATATGAAATTCAACCGTTGTTATCTGAAGAGAATCGTTTTGCT GTTCCTGGTTGCTCTGGGAATTGGCAATGCTCTTTATGCAAATAACGAATTGAAAATACTGGCTGACTCTCTGCATAAAA TGATAGATGCGAAGCCGCTCTTCGTCCAGAAGAAAGAGCAGCGAATCGCTCGGATTAAATGTTTACTGAAGGACTCTGGG TTGACTCCCGATCGGGAATATAAGGTGAATCTCCAATTATACAATGAGTATAAGAAATTTAATATAGACTCTGCCATCCA TTATGTCGACCGGAACCTTGAAATCGCTCGTCAGTTAAATAGAAACTATTTGAAATACCAGTCTTCTTTGCAACTCAGCC TTGTATATTCCATGTGCGGCAGATATAGAGATGCAGAATTACTTCTCGAAAAAATGAAGCCATCAGAATTTCCTCGTTCA TTATTAGCTACTTATTATGATACATATGCCCGTTTTTGGGAGTATTATTCGATTTCTGCTACCAATAATCAGTACGGAAA AAAACGGGAAGCCTATCAGGATTCACTGTATGCTCTTATGGATCATACTTCCTTTGACTATAAATTGTCACGGGCTTATT CTTATGCAGGACACGATTCAACAAAGGCGATCAAGATTTTGGATGAGTTGCTGAATGCTGAGGAGGTAGGCACTCCTAAC TATGCGATGATTACTCATTCGTATGCCATGCTGAGCCGCTATTTGAAAAGAGAGGATGATGCGAAGAAATATCTTATGAT GTCCGCCATTGCTGATATTCAGAATGCCACACGCGAAACAGCCTCCCTGCAGGCACTTGCACTGATACAATATGAGGAAA ATAATTTAGCGGATGCTTTCAAATTTACTCAGTCGGCTATTGATGATGTCGTTTCCTCCGGCATTCATTTCCGGGCAATG GAAATCTATAAATTCTATTCTATTATTAATACGGCTTATCAGACGGAAGAAGCTAGGTCTAAATCGAATCTGATTACTTT TCTTATCTCAACCAGCGTTTCTCTTTTTCTTTTAATCGTGTTGGTCGTATTTATTTATATTCAGATGAAAAAAACGTTGC GGATGAAACGGGCGCTGGCACAAAGTAACGAGGAACTTTTGAGACTGAACGACAAACTGAACAGCATGAATAGTGAGTTG AATGATAAGAATGATGAACTGTGCGAGATTAATAATATAAAGGAGCATTATATCGCTCAGTTTTTCGACGTGTGCTTCAG CTATATTCATAAAATGGAGAAGTATCAGAATATGCTGTATAAAATAGCCATTAATAAGTGCTATGAGGAACTGATTAAAA AGCTGAAATCTTCCGCATTGATTGATGATGAACTTGATGCTCTGTATACTCGCTTCGATAGAGTCTTTCTGAATTTATAT CCGACTTTTGTTTCAGATTTCAATGCTTTACTGAAAGATGACGAGAAGATCATTCTTAAACAGGACGCTTTGTTGAATAG GGAACTTCGTATCTATGCGCTGTTACGTTTGGGCATTACGGATAGCGGAAAGATTGCCAATTTCCTTCGTTGCTCTACAA GTACTGTTTATAATTATCGTACTAAAATGCGTAACAAGGCTGCAGTAGATCGGGATGAATTTGAAAATGAAATTATGAAA ATCTGA
Upstream 100 bases:
>100_bases TCGTTAAACTTCACAAGGAAGTTTCTGTAGAAATTCCTTTCGAAGTAGTTGCTGAATAAGAACAAATTTACTTCATATAT TAAAAAAGCGATTTGTTCTG
Downstream 100 bases:
>100_bases CCAATATAAACGAATTTGTGCCATTCGATAAATAAAATACTTTCCAAACAATCTACATTTTTTATATCCTTGTGTATATC TAAAGTGTTGATTTATAATA
Product: putative regulatory protein
Products: NA
Alternate protein names: Transcriptional Regulator; Regulatory Protein
Number of amino acids: Translated: 561; Mature: 561
Protein sequence:
>561_residues MDKSLFFIIFANNMKFNRCYLKRIVLLFLVALGIGNALYANNELKILADSLHKMIDAKPLFVQKKEQRIARIKCLLKDSG LTPDREYKVNLQLYNEYKKFNIDSAIHYVDRNLEIARQLNRNYLKYQSSLQLSLVYSMCGRYRDAELLLEKMKPSEFPRS LLATYYDTYARFWEYYSISATNNQYGKKREAYQDSLYALMDHTSFDYKLSRAYSYAGHDSTKAIKILDELLNAEEVGTPN YAMITHSYAMLSRYLKREDDAKKYLMMSAIADIQNATRETASLQALALIQYEENNLADAFKFTQSAIDDVVSSGIHFRAM EIYKFYSIINTAYQTEEARSKSNLITFLISTSVSLFLLIVLVVFIYIQMKKTLRMKRALAQSNEELLRLNDKLNSMNSEL NDKNDELCEINNIKEHYIAQFFDVCFSYIHKMEKYQNMLYKIAINKCYEELIKKLKSSALIDDELDALYTRFDRVFLNLY PTFVSDFNALLKDDEKIILKQDALLNRELRIYALLRLGITDSGKIANFLRCSTSTVYNYRTKMRNKAAVDRDEFENEIMK I
Sequences:
>Translated_561_residues MDKSLFFIIFANNMKFNRCYLKRIVLLFLVALGIGNALYANNELKILADSLHKMIDAKPLFVQKKEQRIARIKCLLKDSG LTPDREYKVNLQLYNEYKKFNIDSAIHYVDRNLEIARQLNRNYLKYQSSLQLSLVYSMCGRYRDAELLLEKMKPSEFPRS LLATYYDTYARFWEYYSISATNNQYGKKREAYQDSLYALMDHTSFDYKLSRAYSYAGHDSTKAIKILDELLNAEEVGTPN YAMITHSYAMLSRYLKREDDAKKYLMMSAIADIQNATRETASLQALALIQYEENNLADAFKFTQSAIDDVVSSGIHFRAM EIYKFYSIINTAYQTEEARSKSNLITFLISTSVSLFLLIVLVVFIYIQMKKTLRMKRALAQSNEELLRLNDKLNSMNSEL NDKNDELCEINNIKEHYIAQFFDVCFSYIHKMEKYQNMLYKIAINKCYEELIKKLKSSALIDDELDALYTRFDRVFLNLY PTFVSDFNALLKDDEKIILKQDALLNRELRIYALLRLGITDSGKIANFLRCSTSTVYNYRTKMRNKAAVDRDEFENEIMK I >Mature_561_residues MDKSLFFIIFANNMKFNRCYLKRIVLLFLVALGIGNALYANNELKILADSLHKMIDAKPLFVQKKEQRIARIKCLLKDSG LTPDREYKVNLQLYNEYKKFNIDSAIHYVDRNLEIARQLNRNYLKYQSSLQLSLVYSMCGRYRDAELLLEKMKPSEFPRS LLATYYDTYARFWEYYSISATNNQYGKKREAYQDSLYALMDHTSFDYKLSRAYSYAGHDSTKAIKILDELLNAEEVGTPN YAMITHSYAMLSRYLKREDDAKKYLMMSAIADIQNATRETASLQALALIQYEENNLADAFKFTQSAIDDVVSSGIHFRAM EIYKFYSIINTAYQTEEARSKSNLITFLISTSVSLFLLIVLVVFIYIQMKKTLRMKRALAQSNEELLRLNDKLNSMNSEL NDKNDELCEINNIKEHYIAQFFDVCFSYIHKMEKYQNMLYKIAINKCYEELIKKLKSSALIDDELDALYTRFDRVFLNLY PTFVSDFNALLKDDEKIILKQDALLNRELRIYALLRLGITDSGKIANFLRCSTSTVYNYRTKMRNKAAVDRDEFENEIMK I
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65723; Mature: 65723
Theoretical pI: Translated: 8.84; Mature: 8.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKSLFFIIFANNMKFNRCYLKRIVLLFLVALGIGNALYANNELKILADSLHKMIDAKPL CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHCCCCH FVQKKEQRIARIKCLLKDSGLTPDREYKVNLQLYNEYKKFNIDSAIHYVDRNLEIARQLN HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEHHHHHCCHHHHHHHHHCCHHHHHHHH RNYLKYQSSLQLSLVYSMCGRYRDAELLLEKMKPSEFPRSLLATYYDTYARFWEYYSISA HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEEEEC TNNQYGKKREAYQDSLYALMDHTSFDYKLSRAYSYAGHDSTKAIKILDELLNAEEVGTPN CCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCHHHCCCCC YAMITHSYAMLSRYLKREDDAKKYLMMSAIADIQNATRETASLQALALIQYEENNLADAF EEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHH KFTQSAIDDVVSSGIHFRAMEIYKFYSIINTAYQTEEARSKSNLITFLISTSVSLFLLIV HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH LVVFIYIQMKKTLRMKRALAQSNEELLRLNDKLNSMNSELNDKNDELCEINNIKEHYIAQ HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHCCHHHHHHHH FFDVCFSYIHKMEKYQNMLYKIAINKCYEELIKKLKSSALIDDELDALYTRFDRVFLNLY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH PTFVSDFNALLKDDEKIILKQDALLNRELRIYALLRLGITDSGKIANFLRCSTSTVYNYR HHHHHHHHHHHCCCCCEEEEHHHHHCCCHHEEEHHHHCCCCCCCHHHHHHHCCHHHHHHH TKMRNKAAVDRDEFENEIMKI HHHHHHHCCCHHHHHHHHHCC >Mature Secondary Structure MDKSLFFIIFANNMKFNRCYLKRIVLLFLVALGIGNALYANNELKILADSLHKMIDAKPL CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHCCCCH FVQKKEQRIARIKCLLKDSGLTPDREYKVNLQLYNEYKKFNIDSAIHYVDRNLEIARQLN HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEHHHHHCCHHHHHHHHHCCHHHHHHHH RNYLKYQSSLQLSLVYSMCGRYRDAELLLEKMKPSEFPRSLLATYYDTYARFWEYYSISA HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEEEEC TNNQYGKKREAYQDSLYALMDHTSFDYKLSRAYSYAGHDSTKAIKILDELLNAEEVGTPN CCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCHHHCCCCC YAMITHSYAMLSRYLKREDDAKKYLMMSAIADIQNATRETASLQALALIQYEENNLADAF EEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHH KFTQSAIDDVVSSGIHFRAMEIYKFYSIINTAYQTEEARSKSNLITFLISTSVSLFLLIV HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH LVVFIYIQMKKTLRMKRALAQSNEELLRLNDKLNSMNSELNDKNDELCEINNIKEHYIAQ HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHCCHHHHHHHH FFDVCFSYIHKMEKYQNMLYKIAINKCYEELIKKLKSSALIDDELDALYTRFDRVFLNLY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH PTFVSDFNALLKDDEKIILKQDALLNRELRIYALLRLGITDSGKIANFLRCSTSTVYNYR HHHHHHHHHHHCCCCCEEEEHHHHHCCCHHEEEHHHHCCCCCCCHHHHHHHCCHHHHHHH TKMRNKAAVDRDEFENEIMKI HHHHHHHCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA