Click here to switch to the map view.

The map label for this gene is rfbC [H]

Identifier: 29347561

GI number: 29347561

Start: 2708990

End: 2710018

Strand: Reverse

Name: rfbC [H]

Synonym: BT_2151

Alternate gene names: 29347561

Gene position: 2710018-2708990 (Counterclockwise)

Preceding gene: 29347562

Following gene: 29347560

Centisome position: 43.29

GC content: 46.26

Gene sequence:

>1029_bases
ATGAAAGTGTCAGTGGTTATTTTGAATTGGAACGGGTGCGATATGCTTCGTACTTTTCTTCCGTCCGTGATCCGCTATTC
GAAGAGCGAAGAAGTAGAAGTCTGTGTGGCCGACAATGGCTCTACGGATGCTTCTGTGGAAATGCTTCGGGAGGAATTTC
CTTGTGTCCGGATCATTGTGCTGGATCAGAATCATGGATTCGCAGATGGATATAACCTGGCTTTGCAGCAGGTAGAAGCG
GAGTATGTGGTACTTCTGAATTCTGATGTTGAGGTGACCGAACATTGGCTTGAACCGATGATCTCCTATCTTGATGGCCA
TCCGGAGGTAGCTGCCTGTCAGCCGAAAATCCGTAGCCAGCGGCAAAAAGAGTATTTTGAATATGCCGGAGCAGCCGGAG
GATTTATAGATAAGTACGGCTATCCGTTCTGTCGTGGGCGTATAATGGGAGTGGTTGAAAAGGATGAGGGACAGTATGAT
ACGATCCTGCCAGTTTTCTGGGCAACGGGAGCCGCCCTGTTTATCCGTCATGCGGATTATCGTGAGGCGGGCGGACTGGA
CGGACGTTTCTTTGCCCACATGGAAGAGATTGATTTATGCTGGCGACTACGTTCCCGTGGTCGGGAAATCGTTTGCATTC
CTCAAAGTACGGTCTATCACGTCGGTGGTGCAACTCTGAAAAAGGAGAATCCCCGCAAGACTTTTTTGAATTTTCGTAAT
AATCTTGTCATGCTCTATAAGAATCTTTCGGACGAAGAGTTAAATAAAGTGATGCGTATCCGGACTTGTCTCGATTACGT
GGCTGCATTCACATTTCTGCTGAAGGGGCAGTTAGACAACGCCCGTGCGGTGATGCGTGCCCGGAAAGAATATAAACAGA
TTTGTCCTTCATTTTCTTCTTCCCGTAAAGAAAACTTAAGAAAAACTTCTTTGAATCCAATCCCTGAACGGATAAAAAGT
AGTATCTTGTGGCAGTTTTATGTGGGAGGGTGCAAAAGATTCTCTCAATTGTCGGATTTAAAAGGATAA

Upstream 100 bases:

>100_bases
CTGATTATCTGGAACAGACGATTCGCAGGGAACCGGCTTATTGGCTGTGGTCTCATAAACGTTGGAAAGCTTCTAAGGCT
GAATGTGAAAGGGGGTAAGG

Downstream 100 bases:

>100_bases
CAAAATGGAACCAAAAGTAAGGAGAGGCATCGGGCTGGTAGCACATGATGCCATGAAAAAAGACCTCATCGAATGGGTGC
TGTGGAACTCGGAACTGTTG

Product: glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MKVSVVILNWNGCDMLRTFLPSVIRYSKSEEVEVCVADNGSTDASVEMLREEFPCVRIIVLDQNHGFADGYNLALQQVEA
EYVVLLNSDVEVTEHWLEPMISYLDGHPEVAACQPKIRSQRQKEYFEYAGAAGGFIDKYGYPFCRGRIMGVVEKDEGQYD
TILPVFWATGAALFIRHADYREAGGLDGRFFAHMEEIDLCWRLRSRGREIVCIPQSTVYHVGGATLKKENPRKTFLNFRN
NLVMLYKNLSDEELNKVMRIRTCLDYVAAFTFLLKGQLDNARAVMRARKEYKQICPSFSSSRKENLRKTSLNPIPERIKS
SILWQFYVGGCKRFSQLSDLKG

Sequences:

>Translated_342_residues
MKVSVVILNWNGCDMLRTFLPSVIRYSKSEEVEVCVADNGSTDASVEMLREEFPCVRIIVLDQNHGFADGYNLALQQVEA
EYVVLLNSDVEVTEHWLEPMISYLDGHPEVAACQPKIRSQRQKEYFEYAGAAGGFIDKYGYPFCRGRIMGVVEKDEGQYD
TILPVFWATGAALFIRHADYREAGGLDGRFFAHMEEIDLCWRLRSRGREIVCIPQSTVYHVGGATLKKENPRKTFLNFRN
NLVMLYKNLSDEELNKVMRIRTCLDYVAAFTFLLKGQLDNARAVMRARKEYKQICPSFSSSRKENLRKTSLNPIPERIKS
SILWQFYVGGCKRFSQLSDLKG
>Mature_342_residues
MKVSVVILNWNGCDMLRTFLPSVIRYSKSEEVEVCVADNGSTDASVEMLREEFPCVRIIVLDQNHGFADGYNLALQQVEA
EYVVLLNSDVEVTEHWLEPMISYLDGHPEVAACQPKIRSQRQKEYFEYAGAAGGFIDKYGYPFCRGRIMGVVEKDEGQYD
TILPVFWATGAALFIRHADYREAGGLDGRFFAHMEEIDLCWRLRSRGREIVCIPQSTVYHVGGATLKKENPRKTFLNFRN
NLVMLYKNLSDEELNKVMRIRTCLDYVAAFTFLLKGQLDNARAVMRARKEYKQICPSFSSSRKENLRKTSLNPIPERIKS
SILWQFYVGGCKRFSQLSDLKG

Specific function: Involved in O-antigen biosynthesis [H]

COG id: COG1216

COG function: function code R; Predicted glycosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00534 Glycos_transf_1; PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 39196; Mature: 39196

Theoretical pI: Translated: 7.89; Mature: 7.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVSVVILNWNGCDMLRTFLPSVIRYSKSEEVEVCVADNGSTDASVEMLREEFPCVRIIV
CEEEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCEEEEEE
LDQNHGFADGYNLALQQVEAEYVVLLNSDVEVTEHWLEPMISYLDGHPEVAACQPKIRSQ
EECCCCCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEECCHHHHHH
RQKEYFEYAGAAGGFIDKYGYPFCRGRIMGVVEKDEGQYDTILPVFWATGAALFIRHADY
HHHHHHHHCCCCCCCHHHCCCCHHCCEEEEEEECCCCCCHHHHHHHHHCCHHHEEEECCC
REAGGLDGRFFAHMEEIDLCWRLRSRGREIVCIPQSTVYHVGGATLKKENPRKTFLNFRN
HHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEECCCCEECCCCCHHHHHHHCC
NLVMLYKNLSDEELNKVMRIRTCLDYVAAFTFLLKGQLDNARAVMRARKEYKQICPSFSS
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCH
SRKENLRKTSLNPIPERIKSSILWQFYVGGCKRFSQLSDLKG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKVSVVILNWNGCDMLRTFLPSVIRYSKSEEVEVCVADNGSTDASVEMLREEFPCVRIIV
CEEEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCEEEEEE
LDQNHGFADGYNLALQQVEAEYVVLLNSDVEVTEHWLEPMISYLDGHPEVAACQPKIRSQ
EECCCCCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEECCHHHHHH
RQKEYFEYAGAAGGFIDKYGYPFCRGRIMGVVEKDEGQYDTILPVFWATGAALFIRHADY
HHHHHHHHCCCCCCCHHHCCCCHHCCEEEEEEECCCCCCHHHHHHHHHCCHHHEEEECCC
REAGGLDGRFFAHMEEIDLCWRLRSRGREIVCIPQSTVYHVGGATLKKENPRKTFLNFRN
HHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEECCCCEECCCCCHHHHHHHCC
NLVMLYKNLSDEELNKVMRIRTCLDYVAAFTFLLKGQLDNARAVMRARKEYKQICPSFSS
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCH
SRKENLRKTSLNPIPERIKSSILWQFYVGGCKRFSQLSDLKG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]