| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29347284
Identifier: 29347284
GI number: 29347284
Start: 2355408
End: 2357366
Strand: Reverse
Name: 29347284
Synonym: BT_1874
Alternate gene names: NA
Gene position: 2357366-2355408 (Counterclockwise)
Preceding gene: 29347285
Following gene: 29347283
Centisome position: 37.66
GC content: 43.54
Gene sequence:
>1959_bases ATGAAGAAATTAGCTAAAAAACTATTATTACTATTTATAAGCATTCAGTTTGTAGCCTGTGAGGGGAGCTTGGAACCTCA CTTGTATGGAGTTGTAGATACTGGAAATGCGTTTAATACTCCTGCAGACCTTTCGGCTGCAACGGTTGCCCTTTATTATG AATTACGCCAAAAAGGCTGGGGACCTTATTTGTTTTGTGATGGAAGTTCTTTTGTAATGGATGAAGTTTCAACCGAAGAA TGGACTACCAAGTGGTCATGGGTTGCTTTTCTGAATGGTTCGTGGACGGATGCTGACCAGATGGTGAAAGGATTTTATAA CTGGACTGCTCCTAATATCACCCGTTGCACTTATACGATAGCGAAAATGGAAGAGTCTCCGGTAACCCAGTCGGTGAAAG ACTTGTATATTGCGGAGGTCCGGGCGCTCAGAGCCTTTTTCATGTTCGATTTATATCGGCTTTATGGTCCTATGCCAATG ATTCTGGAAGCCGACCAGGCAATCAATCCGGACCCGGATTATAAACCTTACAGACCTACGTCTGAAGAAGTCGGAACTTT CCTGACGACAGAACTACGTGCTGCTGCCGACGCACTTCCGGTAGAACAAGCTGAATACGGACGTATCACAAAGGGAGCTG CCCTGCATTATTTACTGAAATATTATATGCATGAAAAGCAGTGGCAGAATGCTCTCGAAACGGCAAATGAGATTATCGGT CTGAATTACTATGAACTGGAGAAGGATTATGCAAGTATATTTTCAGCTCAGAACGAAGGTAATAAAGAACTGATGTTTGT TGTGAGAGCTGAACCACTGGCAGATTATGGTAATCATACATATGCAAATATTTTGCCGGGTGACTACGCTTCACCCTCTG GAAACATCGTTGAAGGCTGGTCCGGACACCGGATGCCGTGGGGATTCTATGATACGTTTGATGAAAATGACCGGCGAAGA GCTTTGGCACAGGCCGAATATACATCAAAGTCCGGTGCTACAGTTGATTTGAGAGCCAGTGGTGATGTAGGCGCTTTGCC TTTGAAATATGGGATTGATCCTGAAGCTACAGGTACATGGGCAGGCAATGATAAGGTACTCGACCGATATGCGGAAGTGT TGTTATTTAAGGCGGAAGCATTGAATGAACTGAATGGTCCTAATCAGGGAAGTGTCGATCTGATTAATGATATCCGGAAA CGTGCTTTTGGCTTTGGCACCTCTCTGCCTGCAATACCCGTTTTTAAAGAGAGCTTTGACGGAGAGTTTGTTGACAATGT TATAGGGATATTCTCGATGAATAACTACGATCAGGCCGGTGGATCTGCCTGGAAGTATGATGTGGATAAAAACAACACGT TGAATAACGGAAACAGCTTACGTGTGGAAGTTGAATCTTCGGGTACGGAATTCTGGACTTTGCAGATGCGAACAGAGCCT TTGGTTGCAAAAGGGCGTAAGTATTCAATAAAGATGAAGTTGAAAGCCTCGAAAGACATTCAGTTTGAAATACGCGTTGA AGGACCATTGAGCCACATGGAATCTATCTCTTTGAAAGCAGGCGAAGTAAGGGAATTCTCCACACAGACAGGTAAAGCTA CGGAAGATCAAAATTGTGCTCTGTTCCTTGCTTTGGGAAATTCCGGAAGCGGATATGAACTCTGGATTGATGAAATAGAG TTTACAGCGATGGAACAGGCTGCTGATGGTGGAGATGCTATCATAAAGCAATTATCCGATTTCCCGGATAAGGAGTCGTT GAGAGACTGGATTCTGAAAGAAAGAGGCTGGGAGTTCTGGTATGAAGGAAAGCGCAGGGAAGATTTGATCCGGATGGGGA AATATGTAGAAACCGGAAAGAAGTATAGTACTAATTTCTCAGAGAAGAATCTTTTGTTCCCGATTCCTACTTCGGTCATT ATTGAAAATTCTCATATCGAGCAGAATCCTCATTATTGA
Upstream 100 bases:
>100_bases ATAAAGGACTCGATCCGGAAGTTGAAAACGACCGGGCGTCATATCCTCAACAGAAGACTTTTTCATTTGGACTTGATGTG AAATTTTAAACTGGAATGTC
Downstream 100 bases:
>100_bases TCTTGAACAATTTATTTATCAGTTTTCAATAGGTATTTTATTAAATAATCATTGAGATATGAAAAAGTTAAAGCATTCTA TTCTTTCGCTCTTGTTATTG
Product: hypothetical protein
Products: NA
Alternate protein names: Outer Membrane Protein; RagB/SusD Domain-Containing Protein; Ragb/Susd Domain Protein; RagB/SusD Family Protein; SusD/RagB Family Protein; SusD Family Protein
Number of amino acids: Translated: 652; Mature: 652
Protein sequence:
>652_residues MKKLAKKLLLLFISIQFVACEGSLEPHLYGVVDTGNAFNTPADLSAATVALYYELRQKGWGPYLFCDGSSFVMDEVSTEE WTTKWSWVAFLNGSWTDADQMVKGFYNWTAPNITRCTYTIAKMEESPVTQSVKDLYIAEVRALRAFFMFDLYRLYGPMPM ILEADQAINPDPDYKPYRPTSEEVGTFLTTELRAAADALPVEQAEYGRITKGAALHYLLKYYMHEKQWQNALETANEIIG LNYYELEKDYASIFSAQNEGNKELMFVVRAEPLADYGNHTYANILPGDYASPSGNIVEGWSGHRMPWGFYDTFDENDRRR ALAQAEYTSKSGATVDLRASGDVGALPLKYGIDPEATGTWAGNDKVLDRYAEVLLFKAEALNELNGPNQGSVDLINDIRK RAFGFGTSLPAIPVFKESFDGEFVDNVIGIFSMNNYDQAGGSAWKYDVDKNNTLNNGNSLRVEVESSGTEFWTLQMRTEP LVAKGRKYSIKMKLKASKDIQFEIRVEGPLSHMESISLKAGEVREFSTQTGKATEDQNCALFLALGNSGSGYELWIDEIE FTAMEQAADGGDAIIKQLSDFPDKESLRDWILKERGWEFWYEGKRREDLIRMGKYVETGKKYSTNFSEKNLLFPIPTSVI IENSHIEQNPHY
Sequences:
>Translated_652_residues MKKLAKKLLLLFISIQFVACEGSLEPHLYGVVDTGNAFNTPADLSAATVALYYELRQKGWGPYLFCDGSSFVMDEVSTEE WTTKWSWVAFLNGSWTDADQMVKGFYNWTAPNITRCTYTIAKMEESPVTQSVKDLYIAEVRALRAFFMFDLYRLYGPMPM ILEADQAINPDPDYKPYRPTSEEVGTFLTTELRAAADALPVEQAEYGRITKGAALHYLLKYYMHEKQWQNALETANEIIG LNYYELEKDYASIFSAQNEGNKELMFVVRAEPLADYGNHTYANILPGDYASPSGNIVEGWSGHRMPWGFYDTFDENDRRR ALAQAEYTSKSGATVDLRASGDVGALPLKYGIDPEATGTWAGNDKVLDRYAEVLLFKAEALNELNGPNQGSVDLINDIRK RAFGFGTSLPAIPVFKESFDGEFVDNVIGIFSMNNYDQAGGSAWKYDVDKNNTLNNGNSLRVEVESSGTEFWTLQMRTEP LVAKGRKYSIKMKLKASKDIQFEIRVEGPLSHMESISLKAGEVREFSTQTGKATEDQNCALFLALGNSGSGYELWIDEIE FTAMEQAADGGDAIIKQLSDFPDKESLRDWILKERGWEFWYEGKRREDLIRMGKYVETGKKYSTNFSEKNLLFPIPTSVI IENSHIEQNPHY >Mature_652_residues MKKLAKKLLLLFISIQFVACEGSLEPHLYGVVDTGNAFNTPADLSAATVALYYELRQKGWGPYLFCDGSSFVMDEVSTEE WTTKWSWVAFLNGSWTDADQMVKGFYNWTAPNITRCTYTIAKMEESPVTQSVKDLYIAEVRALRAFFMFDLYRLYGPMPM ILEADQAINPDPDYKPYRPTSEEVGTFLTTELRAAADALPVEQAEYGRITKGAALHYLLKYYMHEKQWQNALETANEIIG LNYYELEKDYASIFSAQNEGNKELMFVVRAEPLADYGNHTYANILPGDYASPSGNIVEGWSGHRMPWGFYDTFDENDRRR ALAQAEYTSKSGATVDLRASGDVGALPLKYGIDPEATGTWAGNDKVLDRYAEVLLFKAEALNELNGPNQGSVDLINDIRK RAFGFGTSLPAIPVFKESFDGEFVDNVIGIFSMNNYDQAGGSAWKYDVDKNNTLNNGNSLRVEVESSGTEFWTLQMRTEP LVAKGRKYSIKMKLKASKDIQFEIRVEGPLSHMESISLKAGEVREFSTQTGKATEDQNCALFLALGNSGSGYELWIDEIE FTAMEQAADGGDAIIKQLSDFPDKESLRDWILKERGWEFWYEGKRREDLIRMGKYVETGKKYSTNFSEKNLLFPIPTSVI IENSHIEQNPHY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 73638; Mature: 73638
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLAKKLLLLFISIQFVACEGSLEPHLYGVVDTGNAFNTPADLSAATVALYYELRQKGW CHHHHHHHHHHHHEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC GPYLFCDGSSFVMDEVSTEEWTTKWSWVAFLNGSWTDADQMVKGFYNWTAPNITRCTYTI CCEEEECCCCEEECCCCCHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEE AKMEESPVTQSVKDLYIAEVRALRAFFMFDLYRLYGPMPMILEADQAINPDPDYKPYRPT ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC SEEVGTFLTTELRAAADALPVEQAEYGRITKGAALHYLLKYYMHEKQWQNALETANEIIG HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC LNYYELEKDYASIFSAQNEGNKELMFVVRAEPLADYGNHTYANILPGDYASPSGNIVEGW CCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHCCCCEEEEECCCCCCCCCCCEEECC SGHRMPWGFYDTFDENDRRRALAQAEYTSKSGATVDLRASGDVGALPLKYGIDPEATGTW CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCC AGNDKVLDRYAEVLLFKAEALNELNGPNQGSVDLINDIRKRAFGFGTSLPAIPVFKESFD CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCC GEFVDNVIGIFSMNNYDQAGGSAWKYDVDKNNTLNNGNSLRVEVESSGTEFWTLQMRTEP CHHHHHHHHHEECCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEEEECCC LVAKGRKYSIKMKLKASKDIQFEIRVEGPLSHMESISLKAGEVREFSTQTGKATEDQNCA HHHCCCEEEEEEEEECCCCEEEEEEECCCHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCE LFLALGNSGSGYELWIDEIEFTAMEQAADGGDAIIKQLSDFPDKESLRDWILKERGWEFW EEEEECCCCCCEEEEEECHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCEE YEGKRREDLIRMGKYVETGKKYSTNFSEKNLLFPIPTSVIIENSHIEQNPHY ECCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCC >Mature Secondary Structure MKKLAKKLLLLFISIQFVACEGSLEPHLYGVVDTGNAFNTPADLSAATVALYYELRQKGW CHHHHHHHHHHHHEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC GPYLFCDGSSFVMDEVSTEEWTTKWSWVAFLNGSWTDADQMVKGFYNWTAPNITRCTYTI CCEEEECCCCEEECCCCCHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEE AKMEESPVTQSVKDLYIAEVRALRAFFMFDLYRLYGPMPMILEADQAINPDPDYKPYRPT ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC SEEVGTFLTTELRAAADALPVEQAEYGRITKGAALHYLLKYYMHEKQWQNALETANEIIG HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC LNYYELEKDYASIFSAQNEGNKELMFVVRAEPLADYGNHTYANILPGDYASPSGNIVEGW CCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHCCCCEEEEECCCCCCCCCCCEEECC SGHRMPWGFYDTFDENDRRRALAQAEYTSKSGATVDLRASGDVGALPLKYGIDPEATGTW CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCC AGNDKVLDRYAEVLLFKAEALNELNGPNQGSVDLINDIRKRAFGFGTSLPAIPVFKESFD CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCC GEFVDNVIGIFSMNNYDQAGGSAWKYDVDKNNTLNNGNSLRVEVESSGTEFWTLQMRTEP CHHHHHHHHHEECCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEEEECCC LVAKGRKYSIKMKLKASKDIQFEIRVEGPLSHMESISLKAGEVREFSTQTGKATEDQNCA HHHCCCEEEEEEEEECCCCEEEEEEECCCHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCE LFLALGNSGSGYELWIDEIEFTAMEQAADGGDAIIKQLSDFPDKESLRDWILKERGWEFW EEEEECCCCCCEEEEEECHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCEE YEGKRREDLIRMGKYVETGKKYSTNFSEKNLLFPIPTSVIIENSHIEQNPHY ECCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA