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The map label for this gene is 29347176

Identifier: 29347176

GI number: 29347176

Start: 2186717

End: 2188204

Strand: Reverse

Name: 29347176

Synonym: BT_1766

Alternate gene names: NA

Gene position: 2188204-2186717 (Counterclockwise)

Preceding gene: 29347181

Following gene: 29347175

Centisome position: 34.95

GC content: 46.84

Gene sequence:

>1488_bases
ATGAATAAAGTGCTGAACAAAGAATCGGCACCGGCTTACCGGCTGACACCCGAATGGGAATTGTACACATCCGTGGTAAC
TACTTCATTGAACAACAGTTTCTATGAGCAGGAGGAAGAGAGAATAGAAAGGGTCCGTACGCTCATCGGAAAATGTAACC
CTTTGTTTGTGGCGCAACTGGCGGCGTACGCAAGGGAAACGATGAACCTGCGTTCCATCCCTTTGGTGATGGCGGTAGAA
CTGGCGCGTATCCACCAGGGCGACAATCTGGTGAAGCGGGTAACTGCCCGTACCGTTCGGCGTGCCGATGAAATCACCGA
ACTGCTGGCCTGTTATCAGCAGGCAAACCGGCGGACGGGGACAAAGAAACTGAACCGTCTTTCCAAACAGTTGCAGGCAG
GGCTACAGGATGCATTCAATACATTCGATGCGTACCAGTTTGCCAAGTATAACCGTTCGGCAGAAGTTTGTCTGAAAGAT
GCCTTGTTTCTTGTGCACCCGAAAGCGAAAGATGAACGGCAACAGGAAATTTTCAATGGAATAGTTAACGATAATCTTCC
GGTTCCCTATACTTGGGAGACAGAATTGTCTGCTTTAGGTCAGCGTACCTTTGCTACGGAAGAAGAACGGCGAAAAGCTT
TCCGTGCCAAATGGGAAGAATTGATAGACAGTGGTAAACTAGGATACATGGCTTTGCTGCGCAATCTGAGGAATATACTG
GAAGCGGAAGTTTCTGCAGACCATATTCTGACAGTAGGGAAGAGGCTGTCTTCCGAAAAGGCGGTTGAAAACTCCAGGCA
GTTGCCTTTCCGCTTTTTGGCTGCTTACCGTGAGTTGTCGAAGACTCCTTCGCTCTATGCTACGATGTTGATGACGGCTT
TGGAACGTGCCGTGCAGGTATCTGCCCGCAATATTACCGGATTTGATGAATCTACCCGTGTGCTGATAGCCTGTGACGTA
TCCGGTTCCATGCAGTGTCCGGTTTCGGCAAAGAGTAAAGTATTGTACTATGACATCGGTTTGCTGCTGGGAATGTTGTT
GAAGTCACGTTGCAAGCAGGTGATGACGGGTATCTTTGGCGATAGATGGAAGATTATTAATCTGCCCGATACGGGTATCT
TGTCCAATGTCGATGCTTTCTATAAAAGGGAAGGTGAAGTGGGATACTCTACAAACGGATATTTGGTTATCAAAGACCTG
ATAGATCGGAAGGCGCAGATGGATAAGATAATGATGTTCACCGACTGTCAGTTGTGGAATAGCCATAGTGATTTGCAGAT
AACGGATTTGTGGAGGAAGTACAAGAAAATTTGTCCGGCAGCCAAGTTGTATCTGTTTGACTTAAGCGGATATGGCAACA
CTCCGCTGGATATCACTCGTGACGATGTATTTCTGATAGCGGGATGGTCGGATAAGATATTTGATATTTTGTCTGCAATC
GACAAAGGAAATGATGCGTTGCAGGAGATAAAAAAGATAGTGGTATAA

Upstream 100 bases:

>100_bases
TTTGAGGTACGCAAAAAGGCTGCGTACCCACCCCCGTATCTTTGCAAAAGAAAACAAATAAAGAGTATAAATGATGAAGT
TTAACTGGATAAATAAAGGA

Downstream 100 bases:

>100_bases
CCGGAGTTCTCAGGATTCCGGTTTACGGAAAAAAACAGAACAAGTGTCGTAGAGAAGAGTTACTTCGTTTGGGACGACCA
TAGGTCGCGGGTTCGACTCC

Product: putative ribonucleoprotein-related protein

Products: NA

Alternate protein names: TROVE Domain Protein; 60-KDa SS-A/Ro Ribonucleoprotein; Trove Domain-Containing Protein; Ribonucleoprotein-Like Protein; Ribonucleoprotein-Like; Trove Domain Protein; Ribonucleoprotein-Related Protein; Ribonucleoprotein Related-Protein

Number of amino acids: Translated: 495; Mature: 495

Protein sequence:

>495_residues
MNKVLNKESAPAYRLTPEWELYTSVVTTSLNNSFYEQEEERIERVRTLIGKCNPLFVAQLAAYARETMNLRSIPLVMAVE
LARIHQGDNLVKRVTARTVRRADEITELLACYQQANRRTGTKKLNRLSKQLQAGLQDAFNTFDAYQFAKYNRSAEVCLKD
ALFLVHPKAKDERQQEIFNGIVNDNLPVPYTWETELSALGQRTFATEEERRKAFRAKWEELIDSGKLGYMALLRNLRNIL
EAEVSADHILTVGKRLSSEKAVENSRQLPFRFLAAYRELSKTPSLYATMLMTALERAVQVSARNITGFDESTRVLIACDV
SGSMQCPVSAKSKVLYYDIGLLLGMLLKSRCKQVMTGIFGDRWKIINLPDTGILSNVDAFYKREGEVGYSTNGYLVIKDL
IDRKAQMDKIMMFTDCQLWNSHSDLQITDLWRKYKKICPAAKLYLFDLSGYGNTPLDITRDDVFLIAGWSDKIFDILSAI
DKGNDALQEIKKIVV

Sequences:

>Translated_495_residues
MNKVLNKESAPAYRLTPEWELYTSVVTTSLNNSFYEQEEERIERVRTLIGKCNPLFVAQLAAYARETMNLRSIPLVMAVE
LARIHQGDNLVKRVTARTVRRADEITELLACYQQANRRTGTKKLNRLSKQLQAGLQDAFNTFDAYQFAKYNRSAEVCLKD
ALFLVHPKAKDERQQEIFNGIVNDNLPVPYTWETELSALGQRTFATEEERRKAFRAKWEELIDSGKLGYMALLRNLRNIL
EAEVSADHILTVGKRLSSEKAVENSRQLPFRFLAAYRELSKTPSLYATMLMTALERAVQVSARNITGFDESTRVLIACDV
SGSMQCPVSAKSKVLYYDIGLLLGMLLKSRCKQVMTGIFGDRWKIINLPDTGILSNVDAFYKREGEVGYSTNGYLVIKDL
IDRKAQMDKIMMFTDCQLWNSHSDLQITDLWRKYKKICPAAKLYLFDLSGYGNTPLDITRDDVFLIAGWSDKIFDILSAI
DKGNDALQEIKKIVV
>Mature_495_residues
MNKVLNKESAPAYRLTPEWELYTSVVTTSLNNSFYEQEEERIERVRTLIGKCNPLFVAQLAAYARETMNLRSIPLVMAVE
LARIHQGDNLVKRVTARTVRRADEITELLACYQQANRRTGTKKLNRLSKQLQAGLQDAFNTFDAYQFAKYNRSAEVCLKD
ALFLVHPKAKDERQQEIFNGIVNDNLPVPYTWETELSALGQRTFATEEERRKAFRAKWEELIDSGKLGYMALLRNLRNIL
EAEVSADHILTVGKRLSSEKAVENSRQLPFRFLAAYRELSKTPSLYATMLMTALERAVQVSARNITGFDESTRVLIACDV
SGSMQCPVSAKSKVLYYDIGLLLGMLLKSRCKQVMTGIFGDRWKIINLPDTGILSNVDAFYKREGEVGYSTNGYLVIKDL
IDRKAQMDKIMMFTDCQLWNSHSDLQITDLWRKYKKICPAAKLYLFDLSGYGNTPLDITRDDVFLIAGWSDKIFDILSAI
DKGNDALQEIKKIVV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI21536371, Length=88, Percent_Identity=44.3181818181818, Blast_Score=73, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56451; Mature: 56451

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS50988 TROVE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKVLNKESAPAYRLTPEWELYTSVVTTSLNNSFYEQEEERIERVRTLIGKCNPLFVAQL
CCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH
AAYARETMNLRSIPLVMAVELARIHQGDNLVKRVTARTVRRADEITELLACYQQANRRTG
HHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
TKKLNRLSKQLQAGLQDAFNTFDAYQFAKYNRSAEVCLKDALFLVHPKAKDERQQEIFNG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEECCCCCHHHHHHHHHH
IVNDNLPVPYTWETELSALGQRTFATEEERRKAFRAKWEELIDSGKLGYMALLRNLRNIL
HHCCCCCCCEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
EAEVSADHILTVGKRLSSEKAVENSRQLPFRFLAAYRELSKTPSLYATMLMTALERAVQV
HHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
SARNITGFDESTRVLIACDVSGSMQCPVSAKSKVLYYDIGLLLGMLLKSRCKQVMTGIFG
HHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCC
DRWKIINLPDTGILSNVDAFYKREGEVGYSTNGYLVIKDLIDRKAQMDKIMMFTDCQLWN
CCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHEECCHHCC
SHSDLQITDLWRKYKKICPAAKLYLFDLSGYGNTPLDITRDDVFLIAGWSDKIFDILSAI
CCCCCCHHHHHHHHHHHCCHHEEEEEEECCCCCCCCCEECCCEEEEECCCHHHHHHHHHH
DKGNDALQEIKKIVV
CCCCHHHHHHHHHCC
>Mature Secondary Structure
MNKVLNKESAPAYRLTPEWELYTSVVTTSLNNSFYEQEEERIERVRTLIGKCNPLFVAQL
CCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH
AAYARETMNLRSIPLVMAVELARIHQGDNLVKRVTARTVRRADEITELLACYQQANRRTG
HHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
TKKLNRLSKQLQAGLQDAFNTFDAYQFAKYNRSAEVCLKDALFLVHPKAKDERQQEIFNG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEECCCCCHHHHHHHHHH
IVNDNLPVPYTWETELSALGQRTFATEEERRKAFRAKWEELIDSGKLGYMALLRNLRNIL
HHCCCCCCCEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
EAEVSADHILTVGKRLSSEKAVENSRQLPFRFLAAYRELSKTPSLYATMLMTALERAVQV
HHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
SARNITGFDESTRVLIACDVSGSMQCPVSAKSKVLYYDIGLLLGMLLKSRCKQVMTGIFG
HHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCC
DRWKIINLPDTGILSNVDAFYKREGEVGYSTNGYLVIKDLIDRKAQMDKIMMFTDCQLWN
CCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHEECCHHCC
SHSDLQITDLWRKYKKICPAAKLYLFDLSGYGNTPLDITRDDVFLIAGWSDKIFDILSAI
CCCCCCHHHHHHHHHHHCCHHEEEEEEECCCCCCCCCEECCCEEEEECCCHHHHHHHHHH
DKGNDALQEIKKIVV
CCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA