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The map label for this gene is rfaH [C]

Identifier: 29347066

GI number: 29347066

Start: 2047413

End: 2047991

Strand: Reverse

Name: rfaH [C]

Synonym: BT_1656

Alternate gene names: 29347066

Gene position: 2047991-2047413 (Counterclockwise)

Preceding gene: 29347067

Following gene: 29347065

Centisome position: 32.71

GC content: 47.5

Gene sequence:

>579_bases
ATGATTTTAAGAAAAAAGAAATCACTAAATGCTGGGCCTATTAATGGGACAGGGGAAGGCGTAGCACACTCAAAACGCTG
GTATGTTGCTTTGGTTCGGATGCACCATGAAAAGAAGGTTTCCGAGCATTTGGACAAGATGGGAATCGAGAATTTCGTTC
CCGTTCAACAGGAACTTCACCAATGGAGCGATCGTCGTAAGCTGGTCACCTCCGTCTTGCTTCCTATGATGGTGTTTGTA
CACGCCGATCCTAAGGAACGCATGGAAGTCCTGAGTTTTTCTACTGTCAGCCGTTACATGGTGATGCGCGGTGAGAGTAG
TCCTGCTGTAATTCCTGACGAGCAGATGGCTCGTTTCCGTTTCATGCTTGATTATTCGGAAGAATCGATAAGCATGAACA
GTTCTCCTTTGGCCCGTGGCGAAAAGGTTCGCGTGATTAAAGGTCCGTTGACGGGTCTTGTTGGCGAACTGGTTAATGTG
GATGGCAGAAGTAAGATTGCTGTTCGCTTGAATATGCTGGGATGCGCCTGTGTTGATATGCCTGTCGGTTATGTAGAGCC
GATTATGGCGGCTGTTTAG

Upstream 100 bases:

>100_bases
GTCATCTTTTCATCGTTTCGTTGAAAAAAGTTCCCTGTTTAGCTTTCCCTATGTTTGTTCGTTACCTAAGAAGTAACGGA
TAAACATGGGGTAAAAAAAT

Downstream 100 bases:

>100_bases
GCCAAGGGATATGGATGCTATTATTTTACAAGAAAACATAGAGGGTTTATTAAGTTTGGTACGTATGCTGCTTCCTGATG
GGGGGAGTGCAGGCTGCGTG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NusG Antitermination Factor; LPS Biosynthesis Related Transcriptional Regulatory Protein; NGN Domain Protein; Transcriptional Antiterminator; Ngn DomaiN-Containing Protein; Transcription Termination/Antitermination Factor NusG; Transcription Antitermination Protein NusG; Transcriptional Regulatory Protein; LPS-Related Regulatory Protein; NusG/RfaH Family Transcriptional Regulator

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MILRKKKSLNAGPINGTGEGVAHSKRWYVALVRMHHEKKVSEHLDKMGIENFVPVQQELHQWSDRRKLVTSVLLPMMVFV
HADPKERMEVLSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEESISMNSSPLARGEKVRVIKGPLTGLVGELVNV
DGRSKIAVRLNMLGCACVDMPVGYVEPIMAAV

Sequences:

>Translated_192_residues
MILRKKKSLNAGPINGTGEGVAHSKRWYVALVRMHHEKKVSEHLDKMGIENFVPVQQELHQWSDRRKLVTSVLLPMMVFV
HADPKERMEVLSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEESISMNSSPLARGEKVRVIKGPLTGLVGELVNV
DGRSKIAVRLNMLGCACVDMPVGYVEPIMAAV
>Mature_192_residues
MILRKKKSLNAGPINGTGEGVAHSKRWYVALVRMHHEKKVSEHLDKMGIENFVPVQQELHQWSDRRKLVTSVLLPMMVFV
HADPKERMEVLSFSTVSRYMVMRGESSPAVIPDEQMARFRFMLDYSEESISMNSSPLARGEKVRVIKGPLTGLVGELVNV
DGRSKIAVRLNMLGCACVDMPVGYVEPIMAAV

Specific function: Transcriptional Activator Of Hemolysin Synthesis And Secretion, Also Required For Expression Of Sex Factor And Lipopolysaccharide Biosynthesis Genes. Transcriptional Activator Of Rfad/Htrm And Htrl. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21568; Mature: 21568

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
7.3 %Met     (Translated Protein)
8.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
7.3 %Met     (Mature Protein)
8.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILRKKKSLNAGPINGTGEGVAHSKRWYVALVRMHHEKKVSEHLDKMGIENFVPVQQELH
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
QWSDRRKLVTSVLLPMMVFVHADPKERMEVLSFSTVSRYMVMRGESSPAVIPDEQMARFR
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHH
FMLDYSEESISMNSSPLARGEKVRVIKGPLTGLVGELVNVDGRSKIAVRLNMLGCACVDM
HHEECCHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCCEEEEEEEHHHHHHHCC
PVGYVEPIMAAV
CCHHHHHHHHCC
>Mature Secondary Structure
MILRKKKSLNAGPINGTGEGVAHSKRWYVALVRMHHEKKVSEHLDKMGIENFVPVQQELH
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
QWSDRRKLVTSVLLPMMVFVHADPKERMEVLSFSTVSRYMVMRGESSPAVIPDEQMARFR
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHH
FMLDYSEESISMNSSPLARGEKVRVIKGPLTGLVGELVNVDGRSKIAVRLNMLGCACVDM
HHEECCHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCCEEEEEEEHHHHHHHCC
PVGYVEPIMAAV
CCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA