Click here to switch to the map view.

The map label for this gene is ytbD [H]

Identifier: 29346811

GI number: 29346811

Start: 1728431

End: 1729636

Strand: Reverse

Name: ytbD [H]

Synonym: BT_1401

Alternate gene names: 29346811

Gene position: 1729636-1728431 (Counterclockwise)

Preceding gene: 29346812

Following gene: 29346810

Centisome position: 27.63

GC content: 42.87

Gene sequence:

>1206_bases
ATGGAACAAAAGAATCAATCAAAACTTCATTCGGGCGGTTTGCTCGTATTTATCCTCACGGTCGGTGTGTTTGGTATTAT
AAATACCGAAATGGGGGTAGTGGGTATCCTGCCTCTAATAGCCGAAACTTTTGATGTCTCGGTGCCGCAGGCAGGTTGGA
CGGTGAGTATCTTTGCACTGGTGGTAGCTGCATCGGCTCCTGTCACTCCGTTATTGTTTTTGGGAGTAAACCGGAAGAAA
GTCATGTTGCTGGCATTGGGATTGTTTACACTGAGTAATATTATATCCATGCTCACTACCAATTTTACAGTACTATTGGT
TGCGCGGATACTTCCCGCCTTTCTTCATCCGGTATATGTTTCGATGGCTTTTACAGTAGCGGCGGCATCAGTCAGCAAGG
AAAAGGCTCCAAAGGCTGTTTCAAGGGTTTTTGTCGGTGTGTCTGCCGGTATGGTGCTGGGTGTTCCGGTGACCAGCTTT
ATAGCTAGTGAGGTCTCATTCTCTATGTCAATGCTGTTTTTCACAGTTGTAAATGCCTTGGTTCTTATAGCTACGATTTT
GTTTATCCCCTCCATGCCGGTAAAGGAGAAAGTATCTTATGGTGCACAACTCAGCGTATTGAAGAGAACGGTGATGTGGA
ACTCTATCATTGCCGTCACCTTGATTAATGGAGCTATGTTCGGCTTCTTTAGTTATATGTCGGACTATCTGAAAACAGTG
ACGGAAGTATCATACAGTGTGATTAGTGTTGTATTATTGGTCTATGGTCTGGCTAATATTGTAGGTAACGTACTTGCCGG
AAAACTATTATCGATAAATGCGCGGCGTTCAATTATTATCATGCCTTTTGCATTGCTGGTTTCCTATATATGTCTCTTTA
TAACAGGAGAGTGGATTACAGCTATGGTAATCATTATTTTAATTTTAGGTGTATTGGCAGGTATAGCAAGTAATAATATG
CAATATATGATCGCGGAAGCTGCTCCCGAAGCTCCCGACTTTGCCAACGGAATGTTTCTGACTTCTGCCAATTTGGGGAC
AACGATCGGTACAGCCGTATGCGGAGCTTTCATCACGGAAATGGGCACACGCTATTCTGTATTCGGTGCATTGTTTTTCC
TGATTGCCAGTATTGTGTTTGTTTATTTGAGAGTTCGTGTAGCTCATTCACAGAAACAAGTTAAAATGAATATGGCAACG
GAATGA

Upstream 100 bases:

>100_bases
GCGGTTGTACCGGATGCGAAAAGCTGGCACGGCAAATAGATAAGGTACATCTTGAAAATGTCTATAAAATGGGATTGGAA
TTGTAAATAGCAGATTTAAT

Downstream 100 bases:

>100_bases
TGAAAAATATATAATCCGTAATTGGGGTAATAATGTCAGTAATTCATCTACAAACACTCTCTTTATTTCACCGTATTTTT
GTAATGTAGAAAGTAGACAA

Product: putative sugar transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MEQKNQSKLHSGGLLVFILTVGVFGIINTEMGVVGILPLIAETFDVSVPQAGWTVSIFALVVAASAPVTPLLFLGVNRKK
VMLLALGLFTLSNIISMLTTNFTVLLVARILPAFLHPVYVSMAFTVAAASVSKEKAPKAVSRVFVGVSAGMVLGVPVTSF
IASEVSFSMSMLFFTVVNALVLIATILFIPSMPVKEKVSYGAQLSVLKRTVMWNSIIAVTLINGAMFGFFSYMSDYLKTV
TEVSYSVISVVLLVYGLANIVGNVLAGKLLSINARRSIIIMPFALLVSYICLFITGEWITAMVIIILILGVLAGIASNNM
QYMIAEAAPEAPDFANGMFLTSANLGTTIGTAVCGAFITEMGTRYSVFGALFFLIASIVFVYLRVRVAHSQKQVKMNMAT
E

Sequences:

>Translated_401_residues
MEQKNQSKLHSGGLLVFILTVGVFGIINTEMGVVGILPLIAETFDVSVPQAGWTVSIFALVVAASAPVTPLLFLGVNRKK
VMLLALGLFTLSNIISMLTTNFTVLLVARILPAFLHPVYVSMAFTVAAASVSKEKAPKAVSRVFVGVSAGMVLGVPVTSF
IASEVSFSMSMLFFTVVNALVLIATILFIPSMPVKEKVSYGAQLSVLKRTVMWNSIIAVTLINGAMFGFFSYMSDYLKTV
TEVSYSVISVVLLVYGLANIVGNVLAGKLLSINARRSIIIMPFALLVSYICLFITGEWITAMVIIILILGVLAGIASNNM
QYMIAEAAPEAPDFANGMFLTSANLGTTIGTAVCGAFITEMGTRYSVFGALFFLIASIVFVYLRVRVAHSQKQVKMNMAT
E
>Mature_401_residues
MEQKNQSKLHSGGLLVFILTVGVFGIINTEMGVVGILPLIAETFDVSVPQAGWTVSIFALVVAASAPVTPLLFLGVNRKK
VMLLALGLFTLSNIISMLTTNFTVLLVARILPAFLHPVYVSMAFTVAAASVSKEKAPKAVSRVFVGVSAGMVLGVPVTSF
IASEVSFSMSMLFFTVVNALVLIATILFIPSMPVKEKVSYGAQLSVLKRTVMWNSIIAVTLINGAMFGFFSYMSDYLKTV
TEVSYSVISVVLLVYGLANIVGNVLAGKLLSINARRSIIIMPFALLVSYICLFITGEWITAMVIIILILGVLAGIASNNM
QYMIAEAAPEAPDFANGMFLTSANLGTTIGTAVCGAFITEMGTRYSVFGALFFLIASIVFVYLRVRVAHSQKQVKMNMAT
E

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=260, Percent_Identity=29.6153846153846, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI1786595, Length=358, Percent_Identity=25.4189944134078, Blast_Score=118, Evalue=9e-28,
Organism=Escherichia coli, GI1787808, Length=169, Percent_Identity=31.9526627218935, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI145693198, Length=329, Percent_Identity=21.580547112462, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42968; Mature: 42968

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure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HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]